Cow genome map
| Conread name: | rpigcf0_004202.y1 |
| Conread position: | 2-247 |
| Cow position: | chr12:19420290-19420044 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 193 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 94, 124 |
| Conread position: | 5-247 |
| Cow position: | chr12:4593740-4593989 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 5-247 |
| Cow position: | chr12:21486241-21486469 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 90, 60 |
| Conread position: | 5-271 |
| Cow position: | chr12:40910645-40910379 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 175 |
| Conread position: | 5-274 |
| Cow position: | chr12:3880611-3880339 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 62, 18 |
| Conread position: | 5-276 |
| Cow position: | chr12:11835892-11836146 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 95, 46 |
| Conread position: | 5-276 |
| Cow position: | chr12:19869117-19869384 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 203 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 82, 32 |
| Conread position: | 5-276 |
| Cow position: | chr12:33323853-33323580 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 5-276 |
| Cow position: | chr12:42181493-42181223 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 36 |
| Conread position: | 5-284 |
| Cow position: | chr12:3568595-3568868 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 91, 37 |
| Conread position: | 5-285 |
| Cow position: | chr12:25147723-25147443 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 113, 90 |
| Conread position: | 5-286 |
| Cow position: | chr12:15429955-15429671 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 251 |
| Conread position: | 5-286 |
| Cow position: | chr12:18011082-18011362 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 100, 37 |
| Conread position: | 5-287 |
| Cow position: | chr12:17000907-17001189 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 206 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 56, 65 |
| Conread position: | 5-287 |
| Cow position: | chr12:37770516-37770801 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 179 |
| Conread position: | 5-289 |
| Cow position: | chr12:22749103-22749378 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 106, 90 |
| Conread position: | 5-291 |
| Cow position: | chr12:28011254-28010969 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 159 |
| Conread position: | 5-292 |
| Cow position: | chr12:6719969-6720255 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 51, 19 |
| Conread position: | 5-292 |
| Cow position: | chr12:25265438-25265148 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 113, 90 |
| Conread position: | 5-293 |
| Cow position: | chr12:5800683-5800966 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 92 |
| Conread position: | 5-293 |
| Cow position: | chr12:18421281-18420992 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 255 |
| Conread position: | 5-295 |
| Cow position: | chr12:5632229-5631949 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 210 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 96, 172 |
| Conread position: | 5-296 |
| Cow position: | chr12:20326420-20326710 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 14 |
| Conread position: | 5-296 |
| Cow position: | chr12:30437896-30438176 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 213 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 95, 142 |
| Conread position: | 6-276 |
| Cow position: | chr12:8869254-8868962 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 219 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 50, 187 |
| Conread position: | 7-289 |
| Cow position: | chr12:9465813-9465533 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 210 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 89, 151 |
| Conread position: | 8-296 |
| Cow position: | chr12:18577494-18577777 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 224 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 53, 145 |
| Conread position: | 9-286 |
| Cow position: | chr12:19865891-19866168 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 207 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 81, 155 |
| Conread position: | 9-293 |
| Cow position: | chr12:27563728-27563445 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 216 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 200, 86 |
| Conread position: | 10-243 |
| Cow position: | chr12:12976536-12976296 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 10-293 |
| Cow position: | chr12:19691582-19691301 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 32 |
| Conread position: | 11-276 |
| Cow position: | chr12:30170313-30170583 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 180 |
| Conread position: | 17-337 |
| Cow position: | chr12:39486087-39486417 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 289 |
| Conread position: | 29-293 |
| Cow position: | chr12:34385845-34385580 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 197 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 63, 138 |
| Conread position: | 33-247 |
| Cow position: | chr12:35368310-35368526 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 21, 141 |
| Conread position: | 33-337 |
| Cow position: | chr12:34148678-34148368 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 118 |
| Conread position: | 40-296 |
| Cow position: | chr12:35771352-35771083 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 51, 5 |
| Conread position: | 41-285 |
| Cow position: | chr12:42604443-42604194 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 7, 55 |
| Conread position: | 42-248 |
| Cow position: | chr12:9229796-9229596 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 52, 19 |
| Conread position: | 45-266 |
| Cow position: | chr12:36042048-36041827 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 59, 207 |
| Conread position: | 45-268 |
| Cow position: | chr12:30745398-30745622 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 115 |
| Conread position: | 49-293 |
| Cow position: | chr12:30805543-30805789 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 5, 128 |
| Conread position: | 53-292 |
| Cow position: | chr12:33457843-33458077 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 43, 14 |
| Conread position: | 54-268 |
| Cow position: | chr12:15530761-15530965 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 195, 7 |
| Conread position: | 54-276 |
| Cow position: | chr12:6411032-6410819 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 42, 7 |
| Conread position: | 54-305 |
| Cow position: | chr12:29411790-29411542 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 42, 23 |
| Conread position: | 55-289 |
| Cow position: | chr12:17031316-17031544 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 41, 90 |
| Conread position: | 57-293 |
| Cow position: | chr12:32391542-32391782 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 175 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 40, 131 |
| Conread position: | 60-326 |
| Cow position: | chr12:25177889-25177614 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 63, 18 |
| Conread position: | 62-268 |
| Cow position: | chr12:3510267-3510474 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 162 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 187, 0 |
| Conread position: | 62-292 |
| Cow position: | chr12:5714331-5714560 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 34, 109 |
| Conread position: | 62-293 |
| Cow position: | chr12:41083768-41084001 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 40, 198 |
| Conread position: | 65-247 |
| Cow position: | chr12:7882016-7881831 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 39, 123 |
| Conread position: | 65-276 |
| Cow position: | chr12:20777224-20777008 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 83, 146 |
| Conread position: | 65-291 |
| Cow position: | chr12:8943515-8943291 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 31, 62 |
| Conread position: | 66-252 |
| Cow position: | chr12:25805404-25805219 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 30, 100 |
| Conread position: | 67-252 |
| Cow position: | chr12:41473802-41473982 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 29, 92 |
| Conread position: | 67-293 |
| Cow position: | chr12:6164322-6164092 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 67-369 |
| Cow position: | chr12:16605939-16605648 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 30, 86 |
| Conread position: | 69-273 |
| Cow position: | chr12:31841150-31841354 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 144, 17 |
| Conread position: | 70-274 |
| Cow position: | chr12:15358038-15358246 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 70-293 |
| Cow position: | chr12:30662241-30662015 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 16, 96 |
| Conread position: | 77-247 |
| Cow position: | chr12:12178638-12178807 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 19, 103 |
| Conread position: | 86-293 |
| Cow position: | chr12:8710560-8710761 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 163, 11 |
| Conread position: | 90-293 |
| Cow position: | chr12:5635717-5635516 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 13, 88 |
| Conread position: | 99-271 |
| Cow position: | chr12:29162070-29161903 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 113, 79 |
| Conread position: | 104-263 |
| Cow position: | chr12:42412474-42412314 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 104, 86 |
| Conread position: | 106-287 |
| Cow position: | chr12:29770824-29770647 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 143, 8 |
| Conread position: | 121-275 |
| Cow position: | chr12:13156436-13156590 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 8, 139 |
| Conread position: | 122-371 |
| Cow position: | chr12:5459027-5459276 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 90, 40 |
| Conread position: | 126-285 |
| Cow position: | chr12:24662883-24663040 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 123, 46 |
| Conread position: | 130-262 |
| Cow position: | chr12:30802983-30803116 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 133-312 |
| Cow position: | chr12:18021368-18021552 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 80, 45 |
| Conread position: | 138-268 |
| Cow position: | chr12:30210258-30210389 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 111, 0 |
Show alignments to all cow chromosomes.