Cow genome map

Conread name: rpigcf0_004202.y1

Conread position: 2-296
Cow position: chr20:35999411-35999708 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 207
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 20, 10

Conread position: 5-247
Cow position: chr20:4781279-4781532 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 188
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 44, 0

Conread position: 5-247
Cow position: chr20:41977148-41977381 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 174
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 96, 160

Conread position: 5-253
Cow position: chr20:41119649-41119885 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 178
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 244, 36

Conread position: 5-256
Cow position: chr20:13269351-13269603 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 0

Conread position: 5-256
Cow position: chr20:29844771-29845026 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 195
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 50, 171

Conread position: 5-256
Cow position: chr20:42469493-42469738 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 185
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 52, 57

Conread position: 5-262
Cow position: chr20:14878260-14878521 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 180
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 20, 92

Conread position: 5-273
Cow position: chr20:11550092-11550359 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 168

Conread position: 5-276
Cow position: chr20:581202-580927 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 205
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 50, 180

Conread position: 5-276
Cow position: chr20:6240803-6240525 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 0

Conread position: 5-276
Cow position: chr20:6258337-6258066 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 245

Conread position: 5-276
Cow position: chr20:19751038-19751304 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 201
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 91, 16

Conread position: 5-276
Cow position: chr20:33532036-33532302 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 191
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 50, 135

Conread position: 5-276
Cow position: chr20:38817742-38818002 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 198
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 87, 37

Conread position: 5-284
Cow position: chr20:25009914-25009638 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 37

Conread position: 5-286
Cow position: chr20:6096759-6096485 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 209
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 91, 120

Conread position: 5-286
Cow position: chr20:19146596-19146883 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 0

Conread position: 5-287
Cow position: chr20:10468800-10469074 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 204
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 91, 37

Conread position: 5-287
Cow position: chr20:24069541-24069813 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 72

Conread position: 5-289
Cow position: chr20:8577973-8578257 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 22

Conread position: 5-289
Cow position: chr20:17903885-17904171 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 211
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 86, 37

Conread position: 5-289
Cow position: chr20:18321068-18320781 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 37

Conread position: 5-289
Cow position: chr20:23792330-23792619 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 231

Conread position: 5-291
Cow position: chr20:30817262-30817546 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 195
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 31, 164

Conread position: 5-291
Cow position: chr20:35797332-35797622 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 195

Conread position: 5-292
Cow position: chr20:6423691-6423985 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 204
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 91, 51

Conread position: 5-293
Cow position: chr20:4945519-4945234 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 212
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 91, 146

Conread position: 5-293
Cow position: chr20:17734043-17733760 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 212
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 208, 28

Conread position: 5-295
Cow position: chr20:19363636-19363351 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 209
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 91, 136

Conread position: 5-296
Cow position: chr20:28982428-28982715 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 208
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 87, 34

Conread position: 5-304
Cow position: chr20:9536863-9537162 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 221
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 91, 37

Conread position: 5-336
Cow position: chr20:13751972-13752296 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 51

Conread position: 5-374
Cow position: chr20:5702474-5702835 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 49

Conread position: 6-247
Cow position: chr20:22313433-22313192 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 180
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 75, 126

Conread position: 6-303
Cow position: chr20:28604941-28605236 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 226
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 90, 50

Conread position: 6-381
Cow position: chr20:10235579-10235949 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 267

Conread position: 7-287
Cow position: chr20:40176981-40177254 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 200
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 242, 8

Conread position: 7-374
Cow position: chr20:7426462-7426086 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 166

Conread position: 9-247
Cow position: chr20:20196875-20197105 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 185
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 95, 133

Conread position: 9-291
Cow position: chr20:19410635-19410351 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 208
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 83, 63

Conread position: 10-263
Cow position: chr20:31464647-31464395 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 185
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 96, 43

Conread position: 11-287
Cow position: chr20:32636832-32636560 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 206
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 85, 12

Conread position: 11-294
Cow position: chr20:12334114-12334392 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 206
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 85, 143

Conread position: 12-268
Cow position: chr20:3781698-3781438 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 197
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 43, 142

Conread position: 13-288
Cow position: chr20:7659475-7659209 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 197
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 83, 64

Conread position: 15-247
Cow position: chr20:25686617-25686382 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 162
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 49, 34

Conread position: 22-268
Cow position: chr20:40256715-40256959 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 176
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 74, 34

Conread position: 29-245
Cow position: chr20:22235062-22235279 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 133

Conread position: 41-273
Cow position: chr20:39517774-39518000 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 171
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 7, 34

Conread position: 54-286
Cow position: chr20:4205738-4205974 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 142

Conread position: 54-293
Cow position: chr20:11923462-11923227 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 174
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 43, 14

Conread position: 55-265
Cow position: chr20:14572582-14572374 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 164
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 12, 113

Conread position: 55-286
Cow position: chr20:21928674-21928913 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 165
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 45, 107

Conread position: 55-289
Cow position: chr20:18618415-18618645 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 171
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 41, 112

Conread position: 55-293
Cow position: chr20:40185897-40185666 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 170
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 158, 44

Conread position: 55-326
Cow position: chr20:14735453-14735722 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 204
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 41, 108

Conread position: 56-289
Cow position: chr20:26996311-26996544 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 39

Conread position: 62-293
Cow position: chr20:26679907-26680141 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 176
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 30, 41

Conread position: 62-381
Cow position: chr20:38768670-38768345 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 238
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 39, 102

Conread position: 65-276
Cow position: chr20:22704074-22704288 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 161
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 31, 0

Conread position: 65-291
Cow position: chr20:28296076-28296305 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 170
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 35, 86

Conread position: 65-296
Cow position: chr20:41452020-41451789 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 164
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 27, 91

Conread position: 66-287
Cow position: chr20:34776973-34777190 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 169
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 30, 98

Conread position: 67-246
Cow position: chr20:24902684-24902497 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 139
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 20, 153

Conread position: 67-247
Cow position: chr20:38578966-38578793 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 136
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 30, 0

Conread position: 67-310
Cow position: chr20:15235552-15235800 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 171
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 40, 0

Conread position: 68-274
Cow position: chr20:35907257-35907057 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 153
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 28, 95

Conread position: 70-280
Cow position: chr20:35760465-35760670 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 152
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 177, 27

Conread position: 70-292
Cow position: chr20:33176973-33177204 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 170
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 26, 116

Conread position: 81-268
Cow position: chr20:11043695-11043514 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 141
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 12, 75

Conread position: 81-285
Cow position: chr20:8556472-8556265 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 161
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 15, 0

Conread position: 83-253
Cow position: chr20:16556351-16556522 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 123
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 19, 57

Conread position: 83-293
Cow position: chr20:34098154-34097942 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 153
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 13, 68

Conread position: 85-371
Cow position: chr20:27408069-27407778 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 14

Conread position: 86-265
Cow position: chr20:38415164-38414984 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 133
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 9, 102

Conread position: 86-276
Cow position: chr20:6602848-6603036 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 144
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 10, 74

Conread position: 86-374
Cow position: chr20:11542476-11542177 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 216
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 9, 101

Conread position: 87-276
Cow position: chr20:32084274-32084085 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 149
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 162, 21

Conread position: 99-273
Cow position: chr20:23846850-23846676 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 133
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 150, 79

Conread position: 104-286
Cow position: chr20:7439022-7438847 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 134
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 145, 30

Conread position: 104-373
Cow position: chr20:16935476-16935205 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 201
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 145, 208

Conread position: 108-291
Cow position: chr20:3321307-3321129 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 142
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 141, 54

Conread position: 109-283
Cow position: chr20:7210867-7211044 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 136
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 11, 0

Conread position: 114-288
Cow position: chr20:15312496-15312674 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 135
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 69, 0

Conread position: 118-276
Cow position: chr20:18837320-18837160 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 127
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 54, 0

Conread position: 122-286
Cow position: chr20:5636325-5636491 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 127, 0

Conread position: 124-292
Cow position: chr20:41309383-41309552 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 122
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 125, 81

Conread position: 128-276
Cow position: chr20:28441177-28441325 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 109
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 121, 107

Conread position: 131-247
Cow position: chr20:9729939-9730052 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 31, 0

Show alignments to all cow chromosomes.