Cow genome map

Conread name: rpigcf0_004202.y1

Conread position: 5-246
Cow position: chr23:2320051-2319808 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 173
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 113, 90

Conread position: 5-247
Cow position: chr23:29824379-29824137 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 95

Conread position: 5-252
Cow position: chr23:18797018-18796755 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 185
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 42, 0

Conread position: 5-253
Cow position: chr23:40781013-40781258 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 75

Conread position: 5-256
Cow position: chr23:3208931-3208685 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 189
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 50, 29

Conread position: 5-265
Cow position: chr23:29441315-29441050 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 251

Conread position: 5-268
Cow position: chr23:221755-222016 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 135

Conread position: 5-268
Cow position: chr23:361226-360968 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 195
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 62, 128

Conread position: 5-275
Cow position: chr23:344490-344220 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 36

Conread position: 5-275
Cow position: chr23:1289988-1290248 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 197
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 37, 0

Conread position: 5-276
Cow position: chr23:15056942-15056687 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 204
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 91, 31

Conread position: 5-285
Cow position: chr23:27735110-27735392 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 201
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 113, 90

Conread position: 5-286
Cow position: chr23:10554326-10554043 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 260

Conread position: 5-286
Cow position: chr23:13520143-13520417 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 206
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 91, 62

Conread position: 5-289
Cow position: chr23:14191237-14191522 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 60

Conread position: 5-292
Cow position: chr23:10014233-10014512 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 201
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 98, 37

Conread position: 5-293
Cow position: chr23:1721317-1721010 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 218
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 49, 166

Conread position: 5-293
Cow position: chr23:33601835-33601553 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 212
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 91, 72

Conread position: 5-293
Cow position: chr23:37992681-37992958 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 211
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 205, 73

Conread position: 5-296
Cow position: chr23:533918-534203 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 48

Conread position: 5-296
Cow position: chr23:1337629-1337325 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 220
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 56, 115

Conread position: 5-296
Cow position: chr23:7402391-7402681 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 218
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 91, 151

Conread position: 5-296
Cow position: chr23:14164719-14164423 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 156

Conread position: 5-303
Cow position: chr23:24866991-24867287 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 31

Conread position: 6-271
Cow position: chr23:22530720-22530463 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 200
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 90, 42

Conread position: 6-292
Cow position: chr23:38455499-38455208 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 129

Conread position: 6-371
Cow position: chr23:39778102-39778469 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 256
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 95, 49

Conread position: 6-374
Cow position: chr23:9268276-9268650 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 343

Conread position: 7-290
Cow position: chr23:26986593-26986301 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 144

Conread position: 10-284
Cow position: chr23:16563533-16563804 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 19

Conread position: 11-302
Cow position: chr23:10852746-10853035 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 215
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 84, 31

Conread position: 14-293
Cow position: chr23:3247285-3247558 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 28

Conread position: 18-296
Cow position: chr23:13599046-13599321 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 202
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 82, 54

Conread position: 19-292
Cow position: chr23:1883092-1883365 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 151

Conread position: 20-287
Cow position: chr23:1428517-1428777 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 181
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 76, 138

Conread position: 24-289
Cow position: chr23:7844989-7845261 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 26-276
Cow position: chr23:36309133-36309376 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 177
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 223, 128

Conread position: 26-287
Cow position: chr23:29626120-29626382 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 193
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 70, 131

Conread position: 29-297
Cow position: chr23:1690497-1690765 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 192
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 69, 222

Conread position: 42-253
Cow position: chr23:33233183-33232977 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 151
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 53, 33

Conread position: 45-276
Cow position: chr23:38208435-38208681 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 179
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 9, 129

Conread position: 50-293
Cow position: chr23:186901-187151 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 180
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 46, 0

Conread position: 54-276
Cow position: chr23:11045216-11045441 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 169
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 13, 96

Conread position: 54-303
Cow position: chr23:9599234-9599470 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 183
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 17, 104

Conread position: 55-289
Cow position: chr23:16881422-16881194 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 183
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 40, 75

Conread position: 58-292
Cow position: chr23:21452995-21452758 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 175
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 43, 114

Conread position: 62-292
Cow position: chr23:29034055-29034289 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 173
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 32, 0

Conread position: 63-292
Cow position: chr23:808905-809141 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 172
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 32, 84

Conread position: 65-247
Cow position: chr23:8293246-8293430 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 146
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 30, 136

Conread position: 65-268
Cow position: chr23:26632545-26632750 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 160
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 27, 0

Conread position: 65-289
Cow position: chr23:29346014-29345791 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 158
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 31, 182

Conread position: 66-296
Cow position: chr23:16583163-16582933 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 164
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 30, 118

Conread position: 67-248
Cow position: chr23:4338860-4338677 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 142
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 29, 0

Conread position: 70-253
Cow position: chr23:2417206-2417384 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 134
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 26, 8

Conread position: 72-252
Cow position: chr23:41348896-41348713 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 135
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 24, 0

Conread position: 83-276
Cow position: chr23:27544595-27544784 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 149
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 6, 83

Conread position: 85-305
Cow position: chr23:4523210-4522992 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 167
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 11, 19

Conread position: 86-276
Cow position: chr23:15742867-15743046 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 138
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 161, 57

Conread position: 87-247
Cow position: chr23:7484848-7485003 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 120
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 120, 59

Conread position: 90-371
Cow position: chr23:5451097-5451386 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 204
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 159, 13

Conread position: 99-372
Cow position: chr23:1489837-1490109 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 195
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 150, 49

Conread position: 100-296
Cow position: chr23:1068531-1068337 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 149
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 97, 62

Conread position: 100-296
Cow position: chr23:2502067-2501878 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 151
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 149, 57

Conread position: 101-260
Cow position: chr23:24704062-24704221 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 115, 53

Conread position: 106-284
Cow position: chr23:1776843-1776670 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 139
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 48, 0

Conread position: 107-262
Cow position: chr23:30585873-30585720 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 142, 97

Conread position: 108-262
Cow position: chr23:22399191-22399345 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 108-292
Cow position: chr23:18296597-18296781 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 142
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 99, 54

Conread position: 111-292
Cow position: chr23:21764710-21764890 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 140
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 139, 67

Conread position: 116-292
Cow position: chr23:29786555-29786375 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 133
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 96, 37

Conread position: 118-268
Cow position: chr23:20437763-20437611 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 90, 0

Show alignments to all cow chromosomes.