Cow genome map
| Conread name: | rpigcf0_004202.y1 |
| Conread position: | 2-287 |
| Cow position: | chr24:3430378-3430674 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 56, 157 |
| Conread position: | 5-240 |
| Cow position: | chr24:23556669-23556435 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 5-242 |
| Cow position: | chr24:43635089-43635332 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 5-247 |
| Cow position: | chr24:33098828-33098590 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 60 |
| Conread position: | 5-247 |
| Cow position: | chr24:40518623-40518388 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 45, 91 |
| Conread position: | 5-252 |
| Cow position: | chr24:22193384-22193635 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 5-253 |
| Cow position: | chr24:814603-814359 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 190 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 89, 37 |
| Conread position: | 5-253 |
| Cow position: | chr24:27267297-27267540 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 93, 37 |
| Conread position: | 5-263 |
| Cow position: | chr24:18732456-18732207 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 201 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 91, 20 |
| Conread position: | 5-273 |
| Cow position: | chr24:3152916-3152654 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 91, 51 |
| Conread position: | 5-273 |
| Cow position: | chr24:39219187-39218914 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 168 |
| Conread position: | 5-275 |
| Cow position: | chr24:634649-634908 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 87, 158 |
| Conread position: | 5-276 |
| Cow position: | chr24:18485341-18485068 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 178 |
| Conread position: | 5-282 |
| Cow position: | chr24:29027711-29027979 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 200 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 244, 37 |
| Conread position: | 5-284 |
| Cow position: | chr24:5754500-5754775 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 136 |
| Conread position: | 5-284 |
| Cow position: | chr24:27543817-27543539 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 207 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 91, 161 |
| Conread position: | 5-285 |
| Cow position: | chr24:17720431-17720154 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 113, 90 |
| Conread position: | 5-285 |
| Cow position: | chr24:31067065-31066785 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 104, 90 |
| Conread position: | 5-285 |
| Cow position: | chr24:35793838-35794124 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 113, 90 |
| Conread position: | 5-288 |
| Cow position: | chr24:24250383-24250671 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 165 |
| Conread position: | 5-289 |
| Cow position: | chr24:28332619-28332326 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 51, 96 |
| Conread position: | 5-293 |
| Cow position: | chr24:201974-201695 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 0 |
| Conread position: | 5-293 |
| Cow position: | chr24:27720090-27719808 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 211 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 91, 37 |
| Conread position: | 5-293 |
| Cow position: | chr24:28721539-28721838 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 219 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 62, 115 |
| Conread position: | 5-293 |
| Cow position: | chr24:41985625-41985937 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 5-295 |
| Cow position: | chr24:37650338-37650620 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 37 |
| Conread position: | 5-296 |
| Cow position: | chr24:2674991-2675270 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 213 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 33, 12 |
| Conread position: | 5-296 |
| Cow position: | chr24:42103029-42103324 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 215 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 49, 76 |
| Conread position: | 5-304 |
| Cow position: | chr24:32205137-32204838 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 169 |
| Conread position: | 5-305 |
| Cow position: | chr24:211640-211948 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 5-361 |
| Cow position: | chr24:28303691-28303334 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 160 |
| Conread position: | 5-370 |
| Cow position: | chr24:29063984-29063619 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 37 |
| Conread position: | 5-371 |
| Cow position: | chr24:25320651-25321026 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 37 |
| Conread position: | 5-376 |
| Cow position: | chr24:28062605-28062994 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 45 |
| Conread position: | 6-289 |
| Cow position: | chr24:31811847-31812131 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 55 |
| Conread position: | 6-371 |
| Cow position: | chr24:39440897-39440527 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 34 |
| Conread position: | 8-248 |
| Cow position: | chr24:28319544-28319300 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 186 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 48, 153 |
| Conread position: | 9-292 |
| Cow position: | chr24:27809842-27810133 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 208 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 9-293 |
| Cow position: | chr24:44041343-44041063 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 211 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 77, 29 |
| Conread position: | 10-287 |
| Cow position: | chr24:20874344-20874622 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 17 |
| Conread position: | 10-289 |
| Cow position: | chr24:33153449-33153719 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 36 |
| Conread position: | 11-271 |
| Cow position: | chr24:27465900-27465653 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 75, 26 |
| Conread position: | 11-337 |
| Cow position: | chr24:38347344-38347681 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 162 |
| Conread position: | 13-293 |
| Cow position: | chr24:17104897-17104622 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 213 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 80, 29 |
| Conread position: | 17-276 |
| Cow position: | chr24:29596140-29595880 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 192 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 128, 78 |
| Conread position: | 18-275 |
| Cow position: | chr24:18734688-18734423 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 107 |
| Conread position: | 19-293 |
| Cow position: | chr24:42007419-42007688 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 81, 152 |
| Conread position: | 22-274 |
| Cow position: | chr24:26929273-26929017 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 27-293 |
| Cow position: | chr24:29781843-29782112 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 118 |
| Conread position: | 29-290 |
| Cow position: | chr24:39842166-39841905 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 76, 51 |
| Conread position: | 45-293 |
| Cow position: | chr24:19535545-19535306 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 167, 54 |
| Conread position: | 47-263 |
| Cow position: | chr24:10671084-10671308 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 17, 49 |
| Conread position: | 53-276 |
| Cow position: | chr24:43432509-43432722 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 43, 85 |
| Conread position: | 55-247 |
| Cow position: | chr24:24137142-24136957 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 44, 74 |
| Conread position: | 55-289 |
| Cow position: | chr24:17860542-17860317 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 41, 104 |
| Conread position: | 55-293 |
| Cow position: | chr24:34742458-34742699 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 29, 64 |
| Conread position: | 57-276 |
| Cow position: | chr24:29388961-29389170 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 192, 38 |
| Conread position: | 57-289 |
| Cow position: | chr24:43370958-43371192 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 15, 116 |
| Conread position: | 59-276 |
| Cow position: | chr24:27748367-27748574 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 59-311 |
| Cow position: | chr24:7913711-7913969 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 194 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 28, 243 |
| Conread position: | 62-265 |
| Cow position: | chr24:17294471-17294273 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 34, 102 |
| Conread position: | 65-285 |
| Cow position: | chr24:18397897-18397673 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 53, 30 |
| Conread position: | 65-374 |
| Cow position: | chr24:1269523-1269827 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 221 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 35, 91 |
| Conread position: | 66-293 |
| Cow position: | chr24:27726284-27726068 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 29, 84 |
| Conread position: | 67-284 |
| Cow position: | chr24:27941287-27941071 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 31, 62 |
| Conread position: | 67-293 |
| Cow position: | chr24:35795019-35794792 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 172 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 29, 185 |
| Conread position: | 69-292 |
| Cow position: | chr24:36404424-36404198 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 169 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 71-275 |
| Cow position: | chr24:41755591-41755791 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 178, 28 |
| Conread position: | 77-289 |
| Cow position: | chr24:16994625-16994826 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 22, 78 |
| Conread position: | 80-289 |
| Cow position: | chr24:17363911-17363707 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 72, 15 |
| Conread position: | 80-289 |
| Cow position: | chr24:21860486-21860282 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 22, 83 |
| Conread position: | 82-266 |
| Cow position: | chr24:18374510-18374697 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 89-288 |
| Cow position: | chr24:18343795-18343994 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 123, 9 |
| Conread position: | 107-247 |
| Cow position: | chr24:25194029-25194168 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 110-276 |
| Cow position: | chr24:33222174-33222013 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 139, 60 |
| Conread position: | 113-292 |
| Cow position: | chr24:20250135-20249951 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 121-276 |
| Cow position: | chr24:31359099-31359253 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 128, 119 |
| Conread position: | 122-374 |
| Cow position: | chr24:29540133-29539886 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 126, 165 |
| Conread position: | 125-337 |
| Cow position: | chr24:39833735-39833508 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 151-287 |
| Cow position: | chr24:30897735-30897597 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 97, 0 |
Show alignments to all cow chromosomes.