Cow genome map
| Conread name: | rpigcf0_004202.y1 |
| Conread position: | 2-293 |
| Cow position: | chr25:6470538-6470245 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 75 |
| Conread position: | 5-247 |
| Cow position: | chr25:2110765-2110998 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 187 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 93, 13 |
| Conread position: | 5-253 |
| Cow position: | chr25:27821091-27821344 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 5-253 |
| Cow position: | chr25:36746765-36746514 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 181 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 5-276 |
| Cow position: | chr25:7800817-7801090 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 232 |
| Conread position: | 5-285 |
| Cow position: | chr25:3140987-3141271 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 113, 90 |
| Conread position: | 5-289 |
| Cow position: | chr25:12204151-12204435 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 159 |
| Conread position: | 5-289 |
| Cow position: | chr25:32191350-32191635 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 204 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 41, 109 |
| Conread position: | 5-291 |
| Cow position: | chr25:26654588-26654878 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 154 |
| Conread position: | 5-291 |
| Cow position: | chr25:36779177-36779465 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 207 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 91, 112 |
| Conread position: | 5-292 |
| Cow position: | chr25:8120458-8120749 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 268 |
| Conread position: | 5-292 |
| Cow position: | chr25:9957353-9957071 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 49, 156 |
| Conread position: | 5-293 |
| Cow position: | chr25:22530968-22531253 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 143 |
| Conread position: | 5-293 |
| Cow position: | chr25:25754314-25754028 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 58 |
| Conread position: | 5-293 |
| Cow position: | chr25:38981788-38982072 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 53, 109 |
| Conread position: | 5-296 |
| Cow position: | chr25:14791437-14791726 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 37 |
| Conread position: | 5-296 |
| Cow position: | chr25:20069405-20069695 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 72 |
| Conread position: | 5-296 |
| Cow position: | chr25:30319768-30319471 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 159 |
| Conread position: | 5-296 |
| Cow position: | chr25:36037109-36036810 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 224 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 51, 168 |
| Conread position: | 5-297 |
| Cow position: | chr25:13569486-13569196 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 210 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 91, 128 |
| Conread position: | 5-331 |
| Cow position: | chr25:26238550-26238881 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 163 |
| Conread position: | 5-374 |
| Cow position: | chr25:17975686-17975312 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 171 |
| Conread position: | 6-243 |
| Cow position: | chr25:2414519-2414736 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 7-247 |
| Cow position: | chr25:12359889-12360132 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 7-268 |
| Cow position: | chr25:35608044-35607779 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 43, 87 |
| Conread position: | 7-311 |
| Cow position: | chr25:6886286-6885986 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 7, 45 |
| Conread position: | 12-243 |
| Cow position: | chr25:12817061-12817293 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 217 |
| Conread position: | 13-265 |
| Cow position: | chr25:27868499-27868743 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 195, 80 |
| Conread position: | 14-293 |
| Cow position: | chr25:7216518-7216798 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 158 |
| Conread position: | 15-276 |
| Cow position: | chr25:7641762-7641503 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 60, 64 |
| Conread position: | 15-285 |
| Cow position: | chr25:8347200-8347469 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 162 |
| Conread position: | 15-301 |
| Cow position: | chr25:10366060-10365774 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 212 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 46, 13 |
| Conread position: | 18-292 |
| Cow position: | chr25:31733042-31732764 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 172 |
| Conread position: | 23-296 |
| Cow position: | chr25:4548016-4547746 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 72, 25 |
| Conread position: | 27-262 |
| Cow position: | chr25:21895184-21894951 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 32, 76 |
| Conread position: | 28-247 |
| Cow position: | chr25:448641-448423 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 77, 142 |
| Conread position: | 44-271 |
| Cow position: | chr25:12195605-12195381 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 54, 106 |
| Conread position: | 49-276 |
| Cow position: | chr25:36081600-36081828 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 47, 21 |
| Conread position: | 54-253 |
| Cow position: | chr25:21266736-21266938 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 42, 114 |
| Conread position: | 54-277 |
| Cow position: | chr25:17712266-17712489 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 42, 9 |
| Conread position: | 54-296 |
| Cow position: | chr25:14196585-14196833 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 55-252 |
| Cow position: | chr25:14833922-14833731 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 194, 46 |
| Conread position: | 55-285 |
| Cow position: | chr25:5837235-5837004 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 41, 177 |
| Conread position: | 55-293 |
| Cow position: | chr25:11131316-11131549 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 194, 47 |
| Conread position: | 59-293 |
| Cow position: | chr25:20785846-20785616 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 177 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 190, 34 |
| Conread position: | 61-247 |
| Cow position: | chr25:35612564-35612382 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 35, 93 |
| Conread position: | 62-272 |
| Cow position: | chr25:32063582-32063794 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 42, 190 |
| Conread position: | 63-259 |
| Cow position: | chr25:24168159-24167967 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 186, 29 |
| Conread position: | 64-293 |
| Cow position: | chr25:19129593-19129821 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 8, 12 |
| Conread position: | 65-293 |
| Cow position: | chr25:17566328-17566556 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 36, 107 |
| Conread position: | 66-293 |
| Cow position: | chr25:16001779-16001553 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 27, 99 |
| Conread position: | 67-276 |
| Cow position: | chr25:14512859-14513063 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 29, 94 |
| Conread position: | 71-292 |
| Cow position: | chr25:4002543-4002769 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 25, 108 |
| Conread position: | 72-293 |
| Cow position: | chr25:24669682-24669469 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 20, 83 |
| Conread position: | 73-279 |
| Cow position: | chr25:6256188-6255982 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 6, 57 |
| Conread position: | 79-296 |
| Cow position: | chr25:23324609-23324390 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 23, 13 |
| Conread position: | 82-293 |
| Cow position: | chr25:22369151-22369363 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 21, 13 |
| Conread position: | 83-293 |
| Cow position: | chr25:15377092-15377293 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 13, 70 |
| Conread position: | 86-248 |
| Cow position: | chr25:18988140-18988304 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 86-268 |
| Cow position: | chr25:7329309-7329490 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 144 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 97-276 |
| Cow position: | chr25:36033211-36033389 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 152, 85 |
| Conread position: | 99-247 |
| Cow position: | chr25:16389514-16389369 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 115, 9 |
| Conread position: | 99-265 |
| Cow position: | chr25:2595954-2596126 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 99-276 |
| Cow position: | chr25:6961373-6961203 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 150, 38 |
| Conread position: | 101-305 |
| Cow position: | chr25:10218272-10218066 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 22, 47 |
| Conread position: | 103-287 |
| Cow position: | chr25:12899536-12899720 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 146, 14 |
| Conread position: | 105-325 |
| Cow position: | chr25:9754301-9754089 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 107, 24 |
| Conread position: | 112-276 |
| Cow position: | chr25:26090025-26089865 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 8, 57 |
| Conread position: | 118-285 |
| Cow position: | chr25:13302996-13303165 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 118-291 |
| Cow position: | chr25:20133520-20133345 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 5, 54 |
| Conread position: | 129-375 |
| Cow position: | chr25:32453591-32453352 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 147, 120 |
| Conread position: | 130-296 |
| Cow position: | chr25:17342257-17342431 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 133-276 |
| Cow position: | chr25:18905692-18905837 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 137-296 |
| Cow position: | chr25:38569651-38569495 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
Show alignments to all cow chromosomes.