Cow genome map
| Conread name: | rpigcf0_004202.y1 |
| Conread position: | 5-247 |
| Cow position: | chr27:13182404-13182172 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 128, 70 |
| Conread position: | 5-247 |
| Cow position: | chr27:24227520-24227765 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 187 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 91, 159 |
| Conread position: | 5-253 |
| Cow position: | chr27:15867660-15867422 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 91, 74 |
| Conread position: | 5-253 |
| Cow position: | chr27:15871435-15871186 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 91, 143 |
| Conread position: | 5-253 |
| Cow position: | chr27:24477673-24477439 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 244, 88 |
| Conread position: | 5-253 |
| Cow position: | chr27:29400090-29399841 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 194 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 8, 46 |
| Conread position: | 5-265 |
| Cow position: | chr27:22549509-22549770 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 185 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 203, 0 |
| Conread position: | 5-268 |
| Cow position: | chr27:29831415-29831679 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 174 |
| Conread position: | 5-274 |
| Cow position: | chr27:26223996-26224268 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 5-276 |
| Cow position: | chr27:8353737-8353477 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 49, 58 |
| Conread position: | 5-276 |
| Cow position: | chr27:8629601-8629870 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 90 |
| Conread position: | 5-276 |
| Cow position: | chr27:13876001-13875734 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 72 |
| Conread position: | 5-284 |
| Cow position: | chr27:1123291-1123025 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 209 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 91, 43 |
| Conread position: | 5-285 |
| Cow position: | chr27:14298087-14298370 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 113, 90 |
| Conread position: | 5-287 |
| Cow position: | chr27:15312471-15312191 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 113, 72 |
| Conread position: | 5-289 |
| Cow position: | chr27:26787091-26787373 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 208 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 113, 90 |
| Conread position: | 5-292 |
| Cow position: | chr27:15858818-15859102 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 164 |
| Conread position: | 5-292 |
| Cow position: | chr27:15925608-15925327 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 15, 61 |
| Conread position: | 5-292 |
| Cow position: | chr27:26424316-26424600 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 69 |
| Conread position: | 5-293 |
| Cow position: | chr27:8291737-8292021 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 76, 178 |
| Conread position: | 5-293 |
| Cow position: | chr27:15454486-15454201 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 186 |
| Conread position: | 5-293 |
| Cow position: | chr27:16238169-16237895 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 273, 106 |
| Conread position: | 5-293 |
| Cow position: | chr27:19388290-19388001 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 58 |
| Conread position: | 5-293 |
| Cow position: | chr27:27038567-27038853 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 218 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 22, 157 |
| Conread position: | 5-295 |
| Cow position: | chr27:4805636-4805922 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 82, 23 |
| Conread position: | 5-296 |
| Cow position: | chr27:4673288-4673002 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 41 |
| Conread position: | 5-304 |
| Cow position: | chr27:26427855-26428156 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 297 |
| Conread position: | 5-311 |
| Cow position: | chr27:21408275-21408595 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 225 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 5-369 |
| Cow position: | chr27:29799215-29798848 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 100, 18 |
| Conread position: | 5-370 |
| Cow position: | chr27:14670108-14670490 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 6-285 |
| Cow position: | chr27:21668853-21669126 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 157 |
| Conread position: | 6-296 |
| Cow position: | chr27:26412986-26413272 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 96, 36 |
| Conread position: | 7-293 |
| Cow position: | chr27:22171570-22171286 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 144 |
| Conread position: | 9-260 |
| Cow position: | chr27:28018603-28018351 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 88, 38 |
| Conread position: | 9-289 |
| Cow position: | chr27:30362512-30362235 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 109 |
| Conread position: | 11-296 |
| Cow position: | chr27:26807299-26807580 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 90, 31 |
| Conread position: | 12-293 |
| Cow position: | chr27:6550717-6550441 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 154 |
| Conread position: | 14-247 |
| Cow position: | chr27:2957668-2957434 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 82, 40 |
| Conread position: | 18-287 |
| Cow position: | chr27:22035113-22035384 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 234 |
| Conread position: | 21-245 |
| Cow position: | chr27:16263590-16263370 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 37, 78 |
| Conread position: | 21-289 |
| Cow position: | chr27:26508904-26509172 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 74 |
| Conread position: | 38-289 |
| Cow position: | chr27:6541865-6541618 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 57, 121 |
| Conread position: | 39-274 |
| Cow position: | chr27:14902410-14902647 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 177 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 53, 156 |
| Conread position: | 42-371 |
| Cow position: | chr27:30890522-30890182 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 15 |
| Conread position: | 45-285 |
| Cow position: | chr27:30792704-30792945 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 181 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 47, 157 |
| Conread position: | 55-325 |
| Cow position: | chr27:12596980-12596717 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 6, 43 |
| Conread position: | 57-293 |
| Cow position: | chr27:4812656-4812893 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 175 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 39, 231 |
| Conread position: | 62-293 |
| Cow position: | chr27:2682927-2683161 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 34, 116 |
| Conread position: | 62-301 |
| Cow position: | chr27:22498769-22498534 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 30, 54 |
| Conread position: | 62-370 |
| Cow position: | chr27:20553933-20553624 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 34, 102 |
| Conread position: | 62-376 |
| Cow position: | chr27:22179581-22179880 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 32, 102 |
| Conread position: | 64-276 |
| Cow position: | chr27:20354794-20354587 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 32, 86 |
| Conread position: | 65-253 |
| Cow position: | chr27:30354132-30354317 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 182, 89 |
| Conread position: | 65-292 |
| Cow position: | chr27:16871706-16871927 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 177 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 184, 34 |
| Conread position: | 66-256 |
| Cow position: | chr27:12246872-12246680 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 30, 115 |
| Conread position: | 67-291 |
| Cow position: | chr27:28038126-28038355 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 71-293 |
| Cow position: | chr27:18593475-18593253 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 169 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 207, 22 |
| Conread position: | 72-297 |
| Cow position: | chr27:19647738-19647957 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 177, 23 |
| Conread position: | 73-292 |
| Cow position: | chr27:19685509-19685725 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 173 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 21, 95 |
| Conread position: | 77-285 |
| Cow position: | chr27:27055779-27055567 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 77-294 |
| Cow position: | chr27:29251081-29250861 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 14, 173 |
| Conread position: | 77-302 |
| Cow position: | chr27:27245151-27245380 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 15, 41 |
| Conread position: | 78-297 |
| Cow position: | chr27:18434273-18434490 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 66, 32 |
| Conread position: | 80-276 |
| Cow position: | chr27:29283212-29283406 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 132, 82 |
| Conread position: | 80-279 |
| Cow position: | chr27:30915200-30915007 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 21, 82 |
| Conread position: | 80-296 |
| Cow position: | chr27:18030861-18031082 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 132, 19 |
| Conread position: | 84-293 |
| Cow position: | chr27:27554491-27554698 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 25, 42 |
| Conread position: | 85-292 |
| Cow position: | chr27:20592175-20591966 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 123, 77 |
| Conread position: | 86-245 |
| Cow position: | chr27:20036938-20037091 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 86-287 |
| Cow position: | chr27:26151210-26151013 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 162, 76 |
| Conread position: | 89-253 |
| Cow position: | chr27:30989657-30989819 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 124, 8 |
| Conread position: | 89-274 |
| Cow position: | chr27:30988984-30988801 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 124, 8 |
| Conread position: | 99-296 |
| Cow position: | chr27:13252187-13251989 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 150, 175 |
| Conread position: | 107-292 |
| Cow position: | chr27:22268674-22268487 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 110-293 |
| Cow position: | chr27:26426375-26426191 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 171, 139 |
| Conread position: | 117-293 |
| Cow position: | chr27:16781024-16780854 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 131, 72 |
| Conread position: | 134-374 |
| Cow position: | chr27:16589570-16589814 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 148, 41 |
| Conread position: | 137-268 |
| Cow position: | chr27:17331642-17331510 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 166-293 |
| Cow position: | chr27:16626011-16625883 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 83, 33 |
| Conread position: | 179-337 |
| Cow position: | chr27:20481276-20481440 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 50, 71 |
Show alignments to all cow chromosomes.