Cow genome map

Conread name: rpigcf0_004202.y1

Conread position: 4-374
Cow position: chr29:17109652-17110023 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 20

Conread position: 5-242
Cow position: chr29:32308642-32308405 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 181
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 88, 154

Conread position: 5-244
Cow position: chr29:19756130-19756366 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 184
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 95, 186

Conread position: 5-254
Cow position: chr29:18748899-18748652 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 187
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 206, 44

Conread position: 5-256
Cow position: chr29:16657373-16657622 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 188
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 202, 96

Conread position: 5-260
Cow position: chr29:4875221-4874958 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 0

Conread position: 5-260
Cow position: chr29:24345782-24345514 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 187
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 91, 0

Conread position: 5-272
Cow position: chr29:3368781-3368518 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 186
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 74, 92

Conread position: 5-274
Cow position: chr29:9078893-9078623 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 194
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 16, 169

Conread position: 5-274
Cow position: chr29:28689292-28689565 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 90

Conread position: 5-275
Cow position: chr29:35501963-35501701 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 44

Conread position: 5-275
Cow position: chr29:43328319-43328591 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 197
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 88, 168

Conread position: 5-276
Cow position: chr29:26616054-26615770 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 179

Conread position: 5-276
Cow position: chr29:34745972-34745709 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 197
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 91, 154

Conread position: 5-278
Cow position: chr29:35291780-35292042 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 200
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 10, 146

Conread position: 5-283
Cow position: chr29:35281185-35281455 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 207
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 211, 88

Conread position: 5-285
Cow position: chr29:13128235-13127949 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 202
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 113, 90

Conread position: 5-286
Cow position: chr29:18212293-18212030 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 202
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 91, 50

Conread position: 5-287
Cow position: chr29:19761957-19762234 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 37

Conread position: 5-289
Cow position: chr29:45005934-45005666 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 0

Conread position: 5-291
Cow position: chr29:606733-606442 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 202
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 113, 90

Conread position: 5-292
Cow position: chr29:6925704-6925980 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 214
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 88, 72

Conread position: 5-293
Cow position: chr29:24952368-24952658 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 104

Conread position: 5-293
Cow position: chr29:28195834-28195543 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 37

Conread position: 5-293
Cow position: chr29:39567368-39567656 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 162

Conread position: 5-295
Cow position: chr29:38410111-38410405 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 210
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 113, 90

Conread position: 5-296
Cow position: chr29:17409016-17409309 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 220
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 53, 62

Conread position: 5-298
Cow position: chr29:19125042-19125319 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 218
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 244, 88

Conread position: 5-302
Cow position: chr29:2744590-2744292 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 159

Conread position: 5-337
Cow position: chr29:1933878-1933542 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 162

Conread position: 6-253
Cow position: chr29:26519778-26519532 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 174
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 92, 135

Conread position: 6-276
Cow position: chr29:13639670-13639419 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 189
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 243, 69

Conread position: 6-296
Cow position: chr29:38581652-38581949 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 100

Conread position: 7-293
Cow position: chr29:4480490-4480201 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 87

Conread position: 7-305
Cow position: chr29:36216803-36217098 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 44

Conread position: 9-250
Cow position: chr29:28868317-28868561 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 182
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 84, 0

Conread position: 9-370
Cow position: chr29:43495754-43496101 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 256
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 122, 15

Conread position: 10-293
Cow position: chr29:13372353-13372634 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 45

Conread position: 11-253
Cow position: chr29:44310340-44310097 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 173
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 90, 47

Conread position: 12-366
Cow position: chr29:10456863-10456507 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 261
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 84, 143

Conread position: 15-369
Cow position: chr29:13615957-13615588 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 252
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 46, 104

Conread position: 20-248
Cow position: chr29:20933402-20933635 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 171
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 76, 0

Conread position: 27-257
Cow position: chr29:17400-17173 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 15

Conread position: 27-263
Cow position: chr29:4524564-4524789 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 169
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 76, 15

Conread position: 28-248
Cow position: chr29:28775749-28775534 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 160
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 68, 137

Conread position: 28-285
Cow position: chr29:14107330-14107073 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 175
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 67, 81

Conread position: 37-294
Cow position: chr29:35406080-35405818 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 189
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 67, 109

Conread position: 41-252
Cow position: chr29:17135569-17135774 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 152
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 54, 40

Conread position: 42-265
Cow position: chr29:3502778-3502993 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 171
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 16, 55

Conread position: 43-293
Cow position: chr29:42364294-42364045 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 176
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 124, 49

Conread position: 45-253
Cow position: chr29:40165962-40166175 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 158
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 22, 102

Conread position: 45-313
Cow position: chr29:39111586-39111328 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 197
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 51, 91

Conread position: 46-296
Cow position: chr29:3395833-3396079 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 191
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 49, 118

Conread position: 48-286
Cow position: chr29:4065814-4066049 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 172
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 7, 28

Conread position: 54-276
Cow position: chr29:19338710-19338939 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 175
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 42, 163

Conread position: 54-276
Cow position: chr29:29769613-29769399 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 166
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 42, 12

Conread position: 54-293
Cow position: chr29:2984618-2984858 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 181
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 153, 43

Conread position: 54-296
Cow position: chr29:25333722-25333491 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 176
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 48, 126

Conread position: 55-286
Cow position: chr29:21933381-21933153 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 171
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 41, 119

Conread position: 55-371
Cow position: chr29:5099030-5098703 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 221
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 41, 129

Conread position: 57-276
Cow position: chr29:94811-94602 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 168
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 154, 38

Conread position: 57-293
Cow position: chr29:22175427-22175659 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 173
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 97, 40

Conread position: 65-290
Cow position: chr29:4804975-4805199 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 162
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 36, 107

Conread position: 65-337
Cow position: chr29:19389228-19389507 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 199
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 31, 62

Conread position: 66-262
Cow position: chr29:26984974-26985166 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 138
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 183, 9

Conread position: 67-241
Cow position: chr29:27009162-27009338 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 127
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 24, 0

Conread position: 67-292
Cow position: chr29:2522322-2522537 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 161
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 29, 68

Conread position: 67-293
Cow position: chr29:22613179-22613396 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 172
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 182, 28

Conread position: 68-241
Cow position: chr29:356071-356241 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 130
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 28, 96

Conread position: 77-276
Cow position: chr29:44378664-44378463 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 146
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 23, 105

Conread position: 77-293
Cow position: chr29:36183030-36183253 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 162
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 19, 57

Conread position: 78-274
Cow position: chr29:34773972-34773784 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 144
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 18, 60

Conread position: 80-282
Cow position: chr29:11562371-11562572 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 154
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 17, 106

Conread position: 81-293
Cow position: chr29:25474665-25474891 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 161
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 13, 0

Conread position: 83-276
Cow position: chr29:11787552-11787748 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 136
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 19, 48

Conread position: 84-248
Cow position: chr29:34744853-34744693 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 128, 13

Conread position: 86-291
Cow position: chr29:4520100-4520304 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 161
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 163, 76

Conread position: 86-305
Cow position: chr29:22714965-22714744 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 171
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 10, 207

Conread position: 97-248
Cow position: chr29:868548-868698 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 119
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 116, 81

Conread position: 99-253
Cow position: chr29:3711164-3711319 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 114
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 150, 0

Conread position: 99-292
Cow position: chr29:39642954-39643144 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 145
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 108, 56

Conread position: 104-261
Cow position: chr29:28446477-28446319 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 123
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 145, 0

Conread position: 104-286
Cow position: chr29:6337445-6337625 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 137
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 104, 58

Conread position: 105-296
Cow position: chr29:31489103-31489293 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 139
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 144, 48

Conread position: 109-292
Cow position: chr29:38580763-38580948 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 133
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 140, 90

Conread position: 111-326
Cow position: chr29:28166428-28166210 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 150
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 46, 139

Conread position: 116-337
Cow position: chr29:36209959-36210175 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 153
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 165, 50

Conread position: 122-296
Cow position: chr29:25091910-25092083 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 127, 12

Conread position: 122-371
Cow position: chr29:10818636-10818387 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 176
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 127, 42

Conread position: 129-276
Cow position: chr29:30188533-30188387 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 84, 49

Conread position: 130-311
Cow position: chr29:32211251-32211072 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 145
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 119, 129

Conread position: 133-276
Cow position: chr29:4334539-4334678 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 80, 16

Conread position: 141-287
Cow position: chr29:23244064-23243916 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 108
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 108, 0

Show alignments to all cow chromosomes.