Cow genome map

Conread name: rpigcf0_004212.y1

Conread position: 54-276
Cow position: chr18:56349877-56350100 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 154
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 158, 0

Conread position: 262-405
Cow position: chr18:16382076-16381934 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 23, 0

Conread position: 263-406
Cow position: chr18:43283537-43283682 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 119
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 5, 53

Conread position: 268-414
Cow position: chr18:43057104-43056957 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 109
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 25, 50

Conread position: 269-399
Cow position: chr18:44909261-44909131 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 100
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 274-374
Cow position: chr18:11951975-11952075 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 85
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 281-416
Cow position: chr18:697022-697157 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 100
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 285-416
Cow position: chr18:3212073-3211943 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 99
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 105, 0

Conread position: 286-412
Cow position: chr18:17195154-17195280 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 286-418
Cow position: chr18:7965425-7965292 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 104
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 12, 0

Conread position: 287-405
Cow position: chr18:21528839-21528723 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 24, 0

Conread position: 288-405
Cow position: chr18:34389190-34389308 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 25, 0

Conread position: 289-404
Cow position: chr18:14871414-14871530 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 23, 0

Conread position: 289-404
Cow position: chr18:43951017-43950902 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 94
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 289-405
Cow position: chr18:7487424-7487308 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 292-406
Cow position: chr18:21969615-21969729 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 92
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 292-416
Cow position: chr18:32960265-32960142 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 98, 0

Conread position: 293-378
Cow position: chr18:47521326-47521411 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 75
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 293-389
Cow position: chr18:50273557-50273652 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 86
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 13, 23

Conread position: 293-407
Cow position: chr18:22045224-22045338 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 20, 103

Conread position: 293-413
Cow position: chr18:29188578-29188460 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 94
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 293-414
Cow position: chr18:37690334-37690215 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 94
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 293-415
Cow position: chr18:21751565-21751443 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 293-415
Cow position: chr18:29372055-29371932 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 96
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 106, 0

Conread position: 293-416
Cow position: chr18:19868073-19868196 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 94
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 293-417
Cow position: chr18:44514276-44514151 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 103
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 19, 0

Conread position: 293-420
Cow position: chr18:25757129-25757255 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 98
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 97, 0

Conread position: 294-402
Cow position: chr18:44137678-44137570 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 89
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 294-405
Cow position: chr18:47175194-47175306 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 93
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 69, 0

Conread position: 294-405
Cow position: chr18:55693003-55692892 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 97
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 11, 78

Conread position: 294-409
Cow position: chr18:11233606-11233488 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 19, 0

Conread position: 294-414
Cow position: chr18:20391390-20391270 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 92
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 294-415
Cow position: chr18:51396313-51396434 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 12, 22

Conread position: 294-417
Cow position: chr18:11330407-11330284 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 95
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 295-404
Cow position: chr18:39860595-39860704 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 89
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 295-405
Cow position: chr18:56463545-56463655 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 87
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 295-407
Cow position: chr18:18664182-18664294 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 89
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 295-412
Cow position: chr18:1584631-1584745 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 48, 0

Conread position: 295-419
Cow position: chr18:26354858-26354981 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 104, 0

Conread position: 296-405
Cow position: chr18:22277586-22277692 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 91
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 22, 59

Conread position: 296-410
Cow position: chr18:45897909-45897795 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 89
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 296-412
Cow position: chr18:10214011-10214125 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 99
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 15, 0

Conread position: 296-416
Cow position: chr18:45573563-45573445 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 95
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 85, 0

Conread position: 296-418
Cow position: chr18:17756760-17756881 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 19, 0

Conread position: 297-408
Cow position: chr18:4857539-4857649 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 11, 48

Conread position: 297-416
Cow position: chr18:18596912-18597029 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 14, 0

Conread position: 297-418
Cow position: chr18:39811402-39811518 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 100
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 39, 90

Conread position: 301-393
Cow position: chr18:40476001-40476093 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 80
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 301-405
Cow position: chr18:3709408-3709305 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 85
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 64, 0

Conread position: 301-417
Cow position: chr18:30295431-30295541 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 96
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 6, 71

Conread position: 302-415
Cow position: chr18:35594663-35594777 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 90
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 51, 0

Conread position: 302-417
Cow position: chr18:39662955-39662842 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 96
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 8, 0

Conread position: 303-411
Cow position: chr18:35950220-35950111 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 90
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 97, 0

Conread position: 304-405
Cow position: chr18:27079041-27078940 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 84
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 304-405
Cow position: chr18:37160424-37160525 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 87
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 304-408
Cow position: chr18:23941442-23941548 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 87
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 305-416
Cow position: chr18:31556985-31557095 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 94
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 10, 0

Conread position: 305-416
Cow position: chr18:52251681-52251792 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 95
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 306-416
Cow position: chr18:44044168-44044278 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 89
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 307-405
Cow position: chr18:5189521-5189617 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 83
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 8, 0

Conread position: 307-416
Cow position: chr18:38211330-38211221 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 88
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 307-416
Cow position: chr18:49970480-49970588 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 88
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 309-418
Cow position: chr18:23652944-23653053 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 93
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 22, 62

Conread position: 311-405
Cow position: chr18:47868763-47868669 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 80
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 311-408
Cow position: chr18:53053062-53053159 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 81
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 311-413
Cow position: chr18:7473728-7473626 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 83
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 311-416
Cow position: chr18:37031999-37031894 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 86
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 311-417
Cow position: chr18:16659261-16659367 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 86
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 312-414
Cow position: chr18:30385345-30385447 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 86
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 316-405
Cow position: chr18:35235859-35235948 (view UCSC Genome Browser custom track)
Alignm length: 90
Alignm identity: 77
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.