Cow genome map

Conread name: rpigcf0_004212.y1

Conread position: 226-416
Cow position: chr3:75974819-75975008 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 135
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 61, 39

Conread position: 233-416
Cow position: chr3:23920175-23920355 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 128
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 58, 0

Conread position: 255-410
Cow position: chr3:45314587-45314429 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 117
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 43, 137

Conread position: 258-414
Cow position: chr3:2648280-2648435 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 115
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 57, 0

Conread position: 262-406
Cow position: chr3:61680541-61680398 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 107
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 265-407
Cow position: chr3:51012225-51012366 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 106
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 7, 0

Conread position: 268-414
Cow position: chr3:55318680-55318825 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 33, 0

Conread position: 279-415
Cow position: chr3:51608974-51609112 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 49, 0

Conread position: 280-417
Cow position: chr3:15973775-15973640 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 35, 0

Conread position: 286-406
Cow position: chr3:64800348-64800466 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 94
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 22, 0

Conread position: 286-422
Cow position: chr3:47735426-47735284 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 113
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 14, 0

Conread position: 287-392
Cow position: chr3:42348283-42348177 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 87
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 25, 0

Conread position: 287-416
Cow position: chr3:35079305-35079434 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 98
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 288-397
Cow position: chr3:29413278-29413170 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 90
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 21, 0

Conread position: 288-406
Cow position: chr3:43388929-43389044 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 19, 0

Conread position: 288-412
Cow position: chr3:76172483-76172607 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 95
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 288-417
Cow position: chr3:79877229-79877100 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 98
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 289-420
Cow position: chr3:40212836-40212968 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 11, 0

Conread position: 292-416
Cow position: chr3:48468372-48468247 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 13, 0

Conread position: 292-416
Cow position: chr3:76300969-76300845 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 292-417
Cow position: chr3:51150325-51150202 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 104
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 43, 0

Conread position: 293-388
Cow position: chr3:43727463-43727368 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 80
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 293-401
Cow position: chr3:12621181-12621289 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 88
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 293-402
Cow position: chr3:49823514-49823405 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 88
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 293-404
Cow position: chr3:79398339-79398228 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 293-405
Cow position: chr3:3556742-3556630 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 89
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 293-405
Cow position: chr3:7381639-7381748 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 92
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 9, 0

Conread position: 293-405
Cow position: chr3:44960139-44960027 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 293-406
Cow position: chr3:52635915-52635802 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 15, 51

Conread position: 293-410
Cow position: chr3:53836516-53836633 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 92
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 293-416
Cow position: chr3:18699914-18700037 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 104
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 293-416
Cow position: chr3:20888466-20888590 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 15, 0

Conread position: 293-416
Cow position: chr3:22078272-22078149 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 293-416
Cow position: chr3:22165221-22165342 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 96
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 102, 0

Conread position: 293-416
Cow position: chr3:35624349-35624472 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 96
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 293-416
Cow position: chr3:58452239-58452116 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 293-416
Cow position: chr3:59391931-59392054 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 94
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 293-416
Cow position: chr3:66563982-66563856 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 98
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 293-416
Cow position: chr3:68587213-68587095 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 34, 93

Conread position: 293-416
Cow position: chr3:76168437-76168558 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 18, 0

Conread position: 293-417
Cow position: chr3:3656710-3656588 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 103
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 23, 51

Conread position: 293-418
Cow position: chr3:2025396-2025272 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 98
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 18, 0

Conread position: 294-404
Cow position: chr3:20802445-20802557 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 93
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 20, 0

Conread position: 294-405
Cow position: chr3:53271023-53270915 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 294-406
Cow position: chr3:4071578-4071688 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 92
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 16, 0

Conread position: 294-417
Cow position: chr3:59317894-59317774 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 11, 89

Conread position: 294-418
Cow position: chr3:1452824-1452947 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 96
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 295-387
Cow position: chr3:30180275-30180183 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 79
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 295-404
Cow position: chr3:40794526-40794636 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 92
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 15, 0

Conread position: 295-405
Cow position: chr3:83705343-83705453 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 88
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 295-405
Cow position: chr3:83889441-83889331 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 89
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 295-406
Cow position: chr3:24220389-24220499 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 89
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 295-409
Cow position: chr3:11608009-11607895 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 92
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 295-415
Cow position: chr3:45744103-45743983 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 95
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 21, 91

Conread position: 295-416
Cow position: chr3:42933675-42933554 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 101
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 295-416
Cow position: chr3:73410474-73410357 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 296-406
Cow position: chr3:72027829-72027720 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 89
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 296-407
Cow position: chr3:12090868-12090757 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 296-407
Cow position: chr3:13882327-13882438 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 89
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 296-413
Cow position: chr3:31555125-31555007 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 76, 0

Conread position: 296-414
Cow position: chr3:33460407-33460526 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 100
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 16, 0

Conread position: 296-417
Cow position: chr3:1011683-1011562 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 296-417
Cow position: chr3:21694418-21694298 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 69, 0

Conread position: 297-415
Cow position: chr3:56972391-56972273 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 297-416
Cow position: chr3:44218958-44218839 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 92
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 297-417
Cow position: chr3:59926823-59926703 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 98
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 297-417
Cow position: chr3:59947856-59947738 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 95
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 7, 0

Conread position: 298-405
Cow position: chr3:210511-210404 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 90
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 298-416
Cow position: chr3:60371174-60371056 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 95
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 14, 57

Conread position: 298-417
Cow position: chr3:31804582-31804700 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 298-417
Cow position: chr3:49482524-49482642 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 95
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 7, 49

Conread position: 300-416
Cow position: chr3:78115403-78115519 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 301-397
Cow position: chr3:57760707-57760611 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 81
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 302-387
Cow position: chr3:28937398-28937483 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 75
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 302-416
Cow position: chr3:47198941-47199053 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 92
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 39, 0

Conread position: 303-416
Cow position: chr3:29386053-29385940 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 94
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 304-387
Cow position: chr3:58527560-58527477 (view UCSC Genome Browser custom track)
Alignm length: 84
Alignm identity: 75
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 304-405
Cow position: chr3:29944043-29943942 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 85
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 304-405
Cow position: chr3:58497843-58497742 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 84
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 304-406
Cow position: chr3:10454027-10453925 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 84
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 304-411
Cow position: chr3:67519995-67520099 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 89
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 7, 0

Conread position: 304-412
Cow position: chr3:39969680-39969788 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 87
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 304-413
Cow position: chr3:37641509-37641400 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 87
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 304-416
Cow position: chr3:986198-986086 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 304-416
Cow position: chr3:11253982-11254094 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 89
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 304-416
Cow position: chr3:58562884-58562772 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 90
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 304-416
Cow position: chr3:80958327-80958438 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 90
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 11, 0

Conread position: 304-419
Cow position: chr3:81276993-81277107 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 91
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 7, 0

Conread position: 305-416
Cow position: chr3:55730284-55730395 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 93
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 305-416
Cow position: chr3:70333787-70333898 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 88
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 308-416
Cow position: chr3:24468205-24468311 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 90
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 38, 0

Conread position: 308-417
Cow position: chr3:72626563-72626672 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 92
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 311-408
Cow position: chr3:59702350-59702253 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 81
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 311-414
Cow position: chr3:45183645-45183748 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 88
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 311-415
Cow position: chr3:14558936-14558832 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 85
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 311-416
Cow position: chr3:8147347-8147451 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 86
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 62, 0

Conread position: 311-416
Cow position: chr3:15443550-15443655 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 88
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 311-419
Cow position: chr3:623926-623817 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 88
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 89, 0

Conread position: 311-423
Cow position: chr3:23131992-23132104 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 90
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 311-425
Cow position: chr3:2636758-2636872 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 91
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 312-403
Cow position: chr3:68303493-68303402 (view UCSC Genome Browser custom track)
Alignm length: 92
Alignm identity: 78
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 312-416
Cow position: chr3:61023846-61023949 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 86
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 11, 0

Show alignments to all cow chromosomes.