Cow genome map

Conread name: rpigcf0_004212.y1

Conread position: 247-405
Cow position: chr6:53932541-53932699 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 116
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 9, 25

Conread position: 265-415
Cow position: chr6:49824803-49824956 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 112
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 267-415
Cow position: chr6:57167265-57167416 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 33, 10

Conread position: 269-419
Cow position: chr6:6201713-6201564 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 111
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 131, 32

Conread position: 276-405
Cow position: chr6:36267275-36267146 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 98
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 278-407
Cow position: chr6:55196488-55196360 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 100
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 37, 0

Conread position: 280-420
Cow position: chr6:21183952-21184091 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 110, 0

Conread position: 284-416
Cow position: chr6:49686089-49685955 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 110
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 11, 0

Conread position: 288-417
Cow position: chr6:48449076-48448952 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 16, 0

Conread position: 290-405
Cow position: chr6:4469027-4468912 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 94
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 290-405
Cow position: chr6:55721869-55721752 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 16, 0

Conread position: 290-407
Cow position: chr6:55764299-55764183 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 92
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 74, 0

Conread position: 290-413
Cow position: chr6:12711532-12711655 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 105
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 109, 14

Conread position: 290-416
Cow position: chr6:19936306-19936433 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 99
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 290-416
Cow position: chr6:50771099-50771225 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 24, 46

Conread position: 293-387
Cow position: chr6:46558310-46558218 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 82
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 22, 0

Conread position: 293-405
Cow position: chr6:54840243-54840359 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 97
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 78, 16

Conread position: 293-406
Cow position: chr6:16738871-16738760 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 94
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 15, 0

Conread position: 293-406
Cow position: chr6:51019410-51019296 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 99
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 12, 24

Conread position: 293-407
Cow position: chr6:62670129-62670014 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 15, 23

Conread position: 293-416
Cow position: chr6:15587333-15587457 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 12, 0

Conread position: 293-416
Cow position: chr6:31928897-31928774 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 102
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 293-416
Cow position: chr6:44543889-44544012 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 293-416
Cow position: chr6:55548276-55548396 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 72, 0

Conread position: 293-417
Cow position: chr6:28559798-28559674 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 293-417
Cow position: chr6:33302654-33302532 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 92, 0

Conread position: 293-418
Cow position: chr6:17313996-17313871 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 102
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 293-419
Cow position: chr6:28620359-28620232 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 21, 0

Conread position: 294-402
Cow position: chr6:29851625-29851517 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 90
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 294-416
Cow position: chr6:22876671-22876793 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 294-416
Cow position: chr6:35180997-35181119 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 294-416
Cow position: chr6:58697374-58697494 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 16, 0

Conread position: 295-405
Cow position: chr6:24110541-24110430 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 98
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 10, 0

Conread position: 295-405
Cow position: chr6:53138682-53138791 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 90
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 81, 0

Conread position: 295-415
Cow position: chr6:63251665-63251785 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 95
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 295-416
Cow position: chr6:43906425-43906546 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 94
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 295-417
Cow position: chr6:16137510-16137633 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 96
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 13, 0

Conread position: 295-417
Cow position: chr6:24362040-24362161 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 20, 0

Conread position: 296-387
Cow position: chr6:9375168-9375259 (view UCSC Genome Browser custom track)
Alignm length: 92
Alignm identity: 78
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 296-416
Cow position: chr6:14913979-14914098 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 96
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 63, 0

Conread position: 296-416
Cow position: chr6:57079680-57079561 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 95
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 19, 0

Conread position: 297-405
Cow position: chr6:30688258-30688363 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 90
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 297-417
Cow position: chr6:21004932-21004814 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 14, 0

Conread position: 301-393
Cow position: chr6:16762379-16762471 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 80
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 301-405
Cow position: chr6:16016285-16016181 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 90
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 301-416
Cow position: chr6:16411863-16411748 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 97
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 302-404
Cow position: chr6:16762885-16762783 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 84
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 302-405
Cow position: chr6:23381417-23381520 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 93
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 302-405
Cow position: chr6:26929194-26929297 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 88
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 302-405
Cow position: chr6:66259986-66259883 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 85
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 303-406
Cow position: chr6:37827700-37827802 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 86
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 13, 0

Conread position: 304-405
Cow position: chr6:14263642-14263743 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 86
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 304-405
Cow position: chr6:62437664-62437563 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 83
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 304-405
Cow position: chr6:62724805-62724704 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 86
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 304-416
Cow position: chr6:18447267-18447380 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 93
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 12, 0

Conread position: 305-416
Cow position: chr6:45159809-45159920 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 93
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 306-405
Cow position: chr6:65831608-65831509 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 84
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 307-406
Cow position: chr6:12669342-12669242 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 87
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 84, 0

Conread position: 307-406
Cow position: chr6:28561924-28562023 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 84
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 307-457
Cow position: chr6:63020586-63020435 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 114
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 138, 124

Conread position: 308-414
Cow position: chr6:19996858-19996752 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 91
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 309-416
Cow position: chr6:8369666-8369559 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 87
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 309-418
Cow position: chr6:26054659-26054767 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 88
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 8, 0

Conread position: 311-418
Cow position: chr6:19563239-19563346 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 88
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 315-414
Cow position: chr6:57089440-57089341 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 82
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 315-416
Cow position: chr6:3952757-3952656 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 83
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 315-416
Cow position: chr6:8186951-8187052 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 90
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 317-406
Cow position: chr6:61883939-61884028 (view UCSC Genome Browser custom track)
Alignm length: 90
Alignm identity: 77
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.