Cow genome map
| Conread name: | rpigcf0_004212.y1 |
| Conread position: | 236-419 |
| Cow position: | chr9:5104660-5104471 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 12, 79 |
| Conread position: | 256-404 |
| Cow position: | chr9:27261615-27261471 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 266-416 |
| Cow position: | chr9:9724100-9723945 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 266-416 |
| Cow position: | chr9:28866310-28866159 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 275-416 |
| Cow position: | chr9:8613419-8613280 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 281-405 |
| Cow position: | chr9:41644956-41644830 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 283-399 |
| Cow position: | chr9:37016492-37016377 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 23, 44 |
| Conread position: | 285-405 |
| Cow position: | chr9:8645068-8645186 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 286-417 |
| Cow position: | chr9:52510919-52511050 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 287-403 |
| Cow position: | chr9:32019523-32019406 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 287-417 |
| Cow position: | chr9:50977451-50977321 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 288-401 |
| Cow position: | chr9:44314903-44314789 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 289-384 |
| Cow position: | chr9:19743782-19743877 (view UCSC Genome Browser custom track) |
| Alignm length: | 96 |
| Alignm identity: | 82 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 290-416 |
| Cow position: | chr9:28156505-28156634 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 290-417 |
| Cow position: | chr9:13744126-13743999 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 292-393 |
| Cow position: | chr9:53413470-53413368 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 84 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 292-402 |
| Cow position: | chr9:55173831-55173720 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 292-404 |
| Cow position: | chr9:52689804-52689692 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 292-410 |
| Cow position: | chr9:44526919-44527038 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 100 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 292-414 |
| Cow position: | chr9:19657165-19657045 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 16, 52 |
| Conread position: | 293-401 |
| Cow position: | chr9:29984272-29984380 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 86 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 293-404 |
| Cow position: | chr9:22318172-22318283 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 91 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 293-405 |
| Cow position: | chr9:36457807-36457919 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 293-406 |
| Cow position: | chr9:47510758-47510646 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 91 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 293-408 |
| Cow position: | chr9:32662225-32662110 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 91 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 293-410 |
| Cow position: | chr9:20394504-20394384 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 293-410 |
| Cow position: | chr9:45141783-45141669 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 293-413 |
| Cow position: | chr9:16770801-16770921 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 293-415 |
| Cow position: | chr9:53632115-53631993 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 293-416 |
| Cow position: | chr9:6954442-6954319 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 293-416 |
| Cow position: | chr9:45170575-45170450 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 293-416 |
| Cow position: | chr9:60741372-60741252 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 293-416 |
| Cow position: | chr9:61019554-61019431 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 293-417 |
| Cow position: | chr9:34286606-34286731 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 22, 105 |
| Conread position: | 293-417 |
| Cow position: | chr9:42061904-42062030 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 293-418 |
| Cow position: | chr9:7543446-7543327 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 13, 23 |
| Conread position: | 293-419 |
| Cow position: | chr9:3915344-3915470 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 294-401 |
| Cow position: | chr9:16147017-16147124 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 87 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 295-383 |
| Cow position: | chr9:14797191-14797104 (view UCSC Genome Browser custom track) |
| Alignm length: | 89 |
| Alignm identity: | 77 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 295-405 |
| Cow position: | chr9:38962249-38962140 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 295-413 |
| Cow position: | chr9:38792827-38792946 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 295-416 |
| Cow position: | chr9:9091295-9091174 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 295-416 |
| Cow position: | chr9:30665187-30665067 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 295-418 |
| Cow position: | chr9:26477025-26477148 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 295-422 |
| Cow position: | chr9:20901304-20901180 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 296-405 |
| Cow position: | chr9:15806112-15806003 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 88 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 296-415 |
| Cow position: | chr9:26715067-26715187 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 296-416 |
| Cow position: | chr9:2984883-2985002 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 296-418 |
| Cow position: | chr9:28315238-28315360 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 296-421 |
| Cow position: | chr9:9431877-9431999 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 297-394 |
| Cow position: | chr9:35932794-35932697 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 84 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 297-405 |
| Cow position: | chr9:48808962-48809069 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 297-414 |
| Cow position: | chr9:11447991-11447877 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 297-418 |
| Cow position: | chr9:39709666-39709789 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 298-404 |
| Cow position: | chr9:48016801-48016911 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 301-416 |
| Cow position: | chr9:20828723-20828837 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 95 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 301-416 |
| Cow position: | chr9:55013523-55013405 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 302-405 |
| Cow position: | chr9:15215869-15215767 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 87 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 302-416 |
| Cow position: | chr9:29091591-29091704 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 303-422 |
| Cow position: | chr9:26388038-26388159 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 88, 12 |
| Conread position: | 304-405 |
| Cow position: | chr9:3573286-3573387 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 84 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 304-412 |
| Cow position: | chr9:14738074-14738180 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 91 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 304-415 |
| Cow position: | chr9:33597795-33597907 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 304-416 |
| Cow position: | chr9:26102552-26102666 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 304-416 |
| Cow position: | chr9:27279128-27279240 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 304-416 |
| Cow position: | chr9:52130834-52130946 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 304-417 |
| Cow position: | chr9:6726869-6726981 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 90 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 305-417 |
| Cow position: | chr9:6205522-6205410 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 306-406 |
| Cow position: | chr9:41995576-41995676 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 84 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 306-417 |
| Cow position: | chr9:34279235-34279124 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 91 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 306-420 |
| Cow position: | chr9:31215903-31216017 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 311-415 |
| Cow position: | chr9:39577331-39577437 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 87 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 311-416 |
| Cow position: | chr9:31344781-31344676 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 86 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 311-416 |
| Cow position: | chr9:52651663-52651558 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 87 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 312-415 |
| Cow position: | chr9:35491261-35491365 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 85 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 315-417 |
| Cow position: | chr9:27495064-27495167 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 88 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 38, 60 |
| Conread position: | 316-416 |
| Cow position: | chr9:34034104-34034202 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 84 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 324-416 |
| Cow position: | chr9:8735627-8735719 (view UCSC Genome Browser custom track) |
| Alignm length: | 93 |
| Alignm identity: | 80 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.