Cow genome map

Conread name: rpigcf0_004212.y1

Conread position: 240-404
Cow position: chrX:38080450-38080284 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 127
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 49, 0

Conread position: 258-416
Cow position: chrX:42246907-42247057 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 123
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 15, 32

Conread position: 261-405
Cow position: chrX:4560013-4559869 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 116
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 25, 16

Conread position: 269-415
Cow position: chrX:19510837-19510982 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 110
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 76, 0

Conread position: 270-417
Cow position: chrX:41790157-41790304 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 6, 46

Conread position: 278-401
Cow position: chrX:17949230-17949353 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 95
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 280-394
Cow position: chrX:4268810-4268924 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 90
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 281-416
Cow position: chrX:35410008-35409876 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 22, 0

Conread position: 285-416
Cow position: chrX:597224-597354 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 16, 0

Conread position: 288-416
Cow position: chrX:23185085-23185213 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 96
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 289-378
Cow position: chrX:7382379-7382288 (view UCSC Genome Browser custom track)
Alignm length: 92
Alignm identity: 79
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 16, 0

Conread position: 291-404
Cow position: chrX:8759873-8759759 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 100
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 19, 0

Conread position: 292-403
Cow position: chrX:43008859-43008747 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 24, 0

Conread position: 292-404
Cow position: chrX:27320698-27320585 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 90
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 292-405
Cow position: chrX:43150679-43150566 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 89
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 292-414
Cow position: chrX:1938263-1938139 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 292-415
Cow position: chrX:15546130-15546007 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 102
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 13, 57

Conread position: 293-402
Cow position: chrX:36074347-36074237 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 89
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 12, 0

Conread position: 293-405
Cow position: chrX:35276233-35276121 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 89
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 293-415
Cow position: chrX:5063484-5063363 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 96
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 19, 46

Conread position: 293-416
Cow position: chrX:783692-783569 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 101
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 293-416
Cow position: chrX:4327930-4328059 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 293-416
Cow position: chrX:23883026-23882903 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 96
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 10, 73

Conread position: 293-416
Cow position: chrX:26881833-26881955 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 95
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 16, 0

Conread position: 293-416
Cow position: chrX:30962627-30962751 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 13, 0

Conread position: 293-416
Cow position: chrX:34193832-34193956 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 19, 0

Conread position: 293-416
Cow position: chrX:42314642-42314767 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 96
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 293-416
Cow position: chrX:46588067-46587947 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 77, 0

Conread position: 293-418
Cow position: chrX:42506700-42506824 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 99
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 22, 0

Conread position: 293-419
Cow position: chrX:30672139-30672264 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 103, 18

Conread position: 294-404
Cow position: chrX:11633927-11633818 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 91
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 8, 0

Conread position: 294-404
Cow position: chrX:11781492-11781383 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 88
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 294-416
Cow position: chrX:11517729-11517855 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 99
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 294-416
Cow position: chrX:20957481-20957363 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 294-416
Cow position: chrX:35285420-35285298 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 294-416
Cow position: chrX:37867500-37867378 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 294-416
Cow position: chrX:42220459-42220577 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 15, 0

Conread position: 294-418
Cow position: chrX:23950805-23950679 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 11, 0

Conread position: 295-384
Cow position: chrX:25282768-25282858 (view UCSC Genome Browser custom track)
Alignm length: 91
Alignm identity: 78
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 295-402
Cow position: chrX:16002720-16002827 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 86
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 295-404
Cow position: chrX:44192197-44192307 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 88
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 66, 0

Conread position: 295-405
Cow position: chrX:41194153-41194040 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 95
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 10, 68

Conread position: 295-412
Cow position: chrX:38968141-38968023 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 93
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 22, 0

Conread position: 295-415
Cow position: chrX:32590158-32590280 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 17, 0

Conread position: 295-416
Cow position: chrX:17231983-17231861 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 10, 0

Conread position: 295-416
Cow position: chrX:36866419-36866297 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 22, 0

Conread position: 295-417
Cow position: chrX:25815654-25815778 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 91, 0

Conread position: 295-417
Cow position: chrX:44040422-44040300 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 296-406
Cow position: chrX:12095528-12095637 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 89
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 19, 0

Conread position: 296-416
Cow position: chrX:12290962-12290844 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 89, 0

Conread position: 296-416
Cow position: chrX:42449769-42449889 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 297-405
Cow position: chrX:34441210-34441318 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 86
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 297-406
Cow position: chrX:24365581-24365688 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 89
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 13, 0

Conread position: 297-406
Cow position: chrX:27442295-27442404 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 89
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 297-417
Cow position: chrX:23335732-23335852 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 95
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 298-405
Cow position: chrX:11670930-11670822 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 92
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 7, 0

Conread position: 301-393
Cow position: chrX:15545412-15545504 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 81
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 301-405
Cow position: chrX:6407783-6407679 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 85
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 301-405
Cow position: chrX:27705826-27705722 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 88
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 49, 59

Conread position: 301-417
Cow position: chrX:26979552-26979666 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 95
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 46, 0

Conread position: 301-418
Cow position: chrX:17498562-17498445 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 98
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 302-416
Cow position: chrX:26367464-26367578 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 89
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 302-419
Cow position: chrX:24170487-24170604 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 303-407
Cow position: chrX:29451308-29451412 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 88
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 303-415
Cow position: chrX:10479989-10479875 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 96
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 15, 0

Conread position: 303-416
Cow position: chrX:20339658-20339769 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 98
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 41, 0

Conread position: 304-405
Cow position: chrX:19356700-19356599 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 92
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 304-414
Cow position: chrX:6267905-6267796 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 91
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 11, 0

Conread position: 304-416
Cow position: chrX:1996215-1996327 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 94
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 304-416
Cow position: chrX:2314382-2314494 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 88
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 304-416
Cow position: chrX:13122180-13122068 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 90
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 304-416
Cow position: chrX:27175236-27175123 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 94
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 50, 0

Conread position: 304-419
Cow position: chrX:7648177-7648292 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 41, 11

Conread position: 304-458
Cow position: chrX:51667-51822 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 124, 11

Conread position: 305-405
Cow position: chrX:27226717-27226617 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 83
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 305-416
Cow position: chrX:17524149-17524259 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 10, 0

Conread position: 306-406
Cow position: chrX:34398550-34398649 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 83
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 9, 0

Conread position: 306-416
Cow position: chrX:33654609-33654719 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 90
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 306-422
Cow position: chrX:23182733-23182849 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 90
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 307-407
Cow position: chrX:11674345-11674245 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 83
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 307-415
Cow position: chrX:4632621-4632729 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 91
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 307-416
Cow position: chrX:6856093-6855984 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 88
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 307-421
Cow position: chrX:3130877-3130761 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 98
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 17, 0

Conread position: 311-389
Cow position: chrX:22134792-22134870 (view UCSC Genome Browser custom track)
Alignm length: 79
Alignm identity: 71
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 311-404
Cow position: chrX:1464684-1464777 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 79
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 311-406
Cow position: chrX:36283569-36283474 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 82
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 311-415
Cow position: chrX:4399347-4399245 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 87
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 74, 0

Conread position: 311-415
Cow position: chrX:40337140-40337036 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 86
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 311-416
Cow position: chrX:42760482-42760377 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 85
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 311-440
Cow position: chrX:19161901-19162034 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 109
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 106, 0

Conread position: 312-405
Cow position: chrX:40680843-40680750 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 79
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 312-416
Cow position: chrX:8642273-8642169 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 89
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 312-417
Cow position: chrX:18196228-18196122 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 88
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 22, 0

Conread position: 315-416
Cow position: chrX:876622-876722 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 84
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 50, 0

Conread position: 315-416
Cow position: chrX:22552754-22552854 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 84
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 315-417
Cow position: chrX:10516479-10516377 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 83
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 315-417
Cow position: chrX:27508799-27508901 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 84
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 315-430
Cow position: chrX:34505880-34505996 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 95
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 90, 0

Show alignments to all cow chromosomes.