Cow genome map

Conread name: rpigcf0_004787.y1

Conread position: 3-159
Cow position: chr1:6731409-6731248 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 124
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 58, 29

Conread position: 3-159
Cow position: chr1:42887050-42887209 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 124
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 58, 24

Conread position: 9-159
Cow position: chr1:55752992-55753148 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 119
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 30, 0

Conread position: 11-159
Cow position: chr1:45019582-45019733 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 50, 97

Conread position: 11-159
Cow position: chr1:78066317-78066469 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 28, 99

Conread position: 13-159
Cow position: chr1:7966071-7965914 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 16-158
Cow position: chr1:37321790-37321933 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 117
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 23, 81

Conread position: 17-152
Cow position: chr1:82538145-82538003 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 44, 0

Conread position: 17-159
Cow position: chr1:41022635-41022487 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 11, 0

Conread position: 17-159
Cow position: chr1:51968742-51968605 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 116
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 21, 0

Conread position: 18-137
Cow position: chr1:52563231-52563347 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 100
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 48, 10

Conread position: 18-142
Cow position: chr1:46294382-46294506 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 99
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 43, 102

Conread position: 18-147
Cow position: chr1:12390268-12390393 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 80, 0

Conread position: 18-150
Cow position: chr1:102768394-102768254 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 9, 0

Conread position: 18-157
Cow position: chr1:30949196-30949061 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 9, 0

Conread position: 18-157
Cow position: chr1:68817587-68817729 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 115
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 39, 10

Conread position: 18-159
Cow position: chr1:196792-196937 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 118
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 43, 23

Conread position: 18-159
Cow position: chr1:3033989-3034131 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 21, 109

Conread position: 18-159
Cow position: chr1:5596993-5597143 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 21, 0

Conread position: 18-159
Cow position: chr1:12464452-12464596 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 117
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 43, 13

Conread position: 18-159
Cow position: chr1:32014412-32014264 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 11, 0

Conread position: 18-159
Cow position: chr1:42175944-42175795 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 44, 9

Conread position: 18-159
Cow position: chr1:48206322-48206468 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 116
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 21, 0

Conread position: 18-159
Cow position: chr1:50906464-50906612 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 119
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 42, 0

Conread position: 18-159
Cow position: chr1:70175324-70175470 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 116
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 41, 0

Conread position: 18-159
Cow position: chr1:71295086-71295224 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 113
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 21, 44

Conread position: 18-159
Cow position: chr1:77810547-77810691 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 118
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 41, 14

Conread position: 18-159
Cow position: chr1:80423514-80423664 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 122
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 13, 0

Conread position: 18-159
Cow position: chr1:81568812-81568960 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 119
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 43, 0

Conread position: 18-159
Cow position: chr1:84811724-84811871 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 117
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 43, 0

Conread position: 18-159
Cow position: chr1:85339591-85339452 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 118
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 40, 20

Conread position: 18-159
Cow position: chr1:90621287-90621437 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 16, 69

Conread position: 18-159
Cow position: chr1:91023250-91023399 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 116
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 13, 0

Conread position: 18-159
Cow position: chr1:93590376-93590518 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 116
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 90, 20

Conread position: 18-159
Cow position: chr1:98583963-98583821 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 42, 14

Conread position: 18-159
Cow position: chr1:100852918-100852777 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 90, 9

Conread position: 19-159
Cow position: chr1:69378381-69378531 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 119
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 27, 22

Conread position: 19-159
Cow position: chr1:70476537-70476683 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 42, 117

Conread position: 19-159
Cow position: chr1:86110529-86110676 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 115
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 81, 0

Conread position: 19-159
Cow position: chr1:88913536-88913387 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 117
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 41, 0

Conread position: 19-159
Cow position: chr1:89509713-89509853 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 41, 26

Conread position: 20-158
Cow position: chr1:67654110-67654251 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 85, 0

Conread position: 20-159
Cow position: chr1:41027290-41027142 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 116
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 19, 0

Conread position: 20-159
Cow position: chr1:45233197-45233059 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 115
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 39, 12

Conread position: 21-159
Cow position: chr1:10470635-10470494 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 113
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 40, 11

Conread position: 22-159
Cow position: chr1:83072654-83072509 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 114
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 39, 19

Conread position: 22-159
Cow position: chr1:99604980-99605119 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 113
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 91, 10

Conread position: 22-159
Cow position: chr1:101439275-101439417 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 17, 127

Conread position: 23-159
Cow position: chr1:25383881-25383736 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 114
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 38, 0

Conread position: 25-159
Cow position: chr1:64572723-64572583 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 36, 7

Conread position: 26-155
Cow position: chr1:51794461-51794590 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 99
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 16, 34

Conread position: 27-159
Cow position: chr1:39095693-39095556 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 110
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 82, 0

Conread position: 27-159
Cow position: chr1:56225674-56225537 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 82, 0

Conread position: 27-159
Cow position: chr1:59519119-59518983 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 109
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 34, 96

Conread position: 27-159
Cow position: chr1:62469267-62469128 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 111
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 12, 0

Conread position: 27-159
Cow position: chr1:70483127-70483266 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 110
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 33, 0

Conread position: 28-146
Cow position: chr1:89158501-89158623 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 67, 0

Conread position: 28-155
Cow position: chr1:3923596-3923728 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 107
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 11, 71

Conread position: 28-156
Cow position: chr1:73960893-73960771 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 103
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 36, 0

Conread position: 28-157
Cow position: chr1:54267734-54267869 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 108
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 33, 13

Conread position: 28-157
Cow position: chr1:97755709-97755573 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 11, 0

Conread position: 28-158
Cow position: chr1:64302042-64302174 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 106
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 11, 83

Conread position: 28-158
Cow position: chr1:78794028-78794162 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 102
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 11, 0

Conread position: 28-159
Cow position: chr1:6854109-6854240 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 11, 79

Conread position: 28-159
Cow position: chr1:10778763-10778631 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 102
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 11, 39

Conread position: 28-159
Cow position: chr1:20667542-20667674 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 11, 99

Conread position: 28-159
Cow position: chr1:23101882-23101743 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 109
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 34, 0

Conread position: 28-159
Cow position: chr1:48618039-48618176 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 11, 0

Conread position: 28-159
Cow position: chr1:66752425-66752561 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 33, 0

Conread position: 28-159
Cow position: chr1:75745067-75744930 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 73, 0

Conread position: 28-159
Cow position: chr1:81481178-81481314 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 111
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 33, 0

Conread position: 28-159
Cow position: chr1:84787469-84787338 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 10, 81

Conread position: 29-158
Cow position: chr1:101788891-101789024 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 32, 0

Conread position: 29-159
Cow position: chr1:81290710-81290574 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 32, 0

Conread position: 29-159
Cow position: chr1:81638745-81638616 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 100
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 68, 0

Conread position: 38-158
Cow position: chr1:24132866-24132994 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 104
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 19, 0

Conread position: 38-158
Cow position: chr1:40212151-40212275 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 23, 0

Conread position: 38-158
Cow position: chr1:41137951-41138075 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 23, 0

Conread position: 38-158
Cow position: chr1:43505721-43505598 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 102
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 23, 0

Conread position: 38-159
Cow position: chr1:19384260-19384388 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 101
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 38-159
Cow position: chr1:43855486-43855363 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 23, 78

Conread position: 38-159
Cow position: chr1:46143270-46143394 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 22, 73

Conread position: 38-159
Cow position: chr1:53474345-53474224 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 102
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 23, 82

Conread position: 38-159
Cow position: chr1:82936408-82936529 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 20, 68

Conread position: 38-159
Cow position: chr1:89388540-89388412 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 103
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 23, 0

Conread position: 38-159
Cow position: chr1:98742213-98742085 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 102
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 24, 0

Conread position: 39-159
Cow position: chr1:70416564-70416692 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 101
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 39-159
Cow position: chr1:71636132-71636255 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 101
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 22, 97

Conread position: 40-159
Cow position: chr1:70538801-70538679 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 100
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 20, 0

Conread position: 41-159
Cow position: chr1:71078768-71078892 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 103
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 20, 84

Conread position: 43-158
Cow position: chr1:10633232-10633115 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 97
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 17, 73

Conread position: 43-158
Cow position: chr1:91743271-91743393 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 44-159
Cow position: chr1:79630729-79630848 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 17, 31

Conread position: 45-159
Cow position: chr1:98031105-98030991 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 21, 88

Conread position: 45-159
Cow position: chr1:100762264-100762145 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 16, 0

Conread position: 57-159
Cow position: chr1:87197995-87197888 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 90
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 46, 0

Conread position: 57-159
Cow position: chr1:89157955-89158057 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 87
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 45, 33

Conread position: 62-159
Cow position: chr1:4512149-4512051 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 82
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 47, 0

Show alignments to all cow chromosomes.