Cow genome map

Conread name: rpigcf0_004787.y1

Conread position: 6-149
Cow position: chr11:66104186-66104334 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 13-159
Cow position: chr11:17721599-17721757 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 5, 0

Conread position: 13-159
Cow position: chr11:82740692-82740554 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 110
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 83, 0

Conread position: 15-159
Cow position: chr11:63484139-63483987 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 16, 0

Conread position: 15-159
Cow position: chr11:74316904-74316754 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 46, 121

Conread position: 16-117
Cow position: chr11:434663-434764 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 82
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 17-146
Cow position: chr11:22583147-22583018 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 101
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 93, 114

Conread position: 17-159
Cow position: chr11:18915206-18915071 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 118
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 44, 90

Conread position: 17-159
Cow position: chr11:20205662-20205807 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 114
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 44, 0

Conread position: 17-159
Cow position: chr11:30986832-30986683 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 44, 0

Conread position: 18-152
Cow position: chr11:71390380-71390514 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 43, 13

Conread position: 18-156
Cow position: chr11:62742455-62742598 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 114
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 12, 22

Conread position: 18-159
Cow position: chr11:2917396-2917541 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 110
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 20, 125

Conread position: 18-159
Cow position: chr11:6784398-6784253 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 116
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 43, 9

Conread position: 18-159
Cow position: chr11:39060410-39060557 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 43, 132

Conread position: 18-159
Cow position: chr11:42067060-42066909 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 13, 0

Conread position: 18-159
Cow position: chr11:42206612-42206466 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 119
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 13, 0

Conread position: 18-159
Cow position: chr11:44032201-44032056 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 45, 0

Conread position: 18-159
Cow position: chr11:48296220-48296075 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 90, 0

Conread position: 18-159
Cow position: chr11:53651835-53651685 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 43, 0

Conread position: 18-159
Cow position: chr11:55053059-55052916 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 23, 48

Conread position: 18-159
Cow position: chr11:56115132-56114985 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 116
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 43, 0

Conread position: 18-159
Cow position: chr11:63866466-63866615 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 118
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 41, 0

Conread position: 18-159
Cow position: chr11:63998895-63999047 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 44, 0

Conread position: 19-158
Cow position: chr11:8421931-8422072 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 43, 92

Conread position: 19-158
Cow position: chr11:48315205-48315351 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 110
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 42, 0

Conread position: 19-159
Cow position: chr11:53486969-53487109 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 117
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 42, 20

Conread position: 19-159
Cow position: chr11:54872567-54872716 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 42, 0

Conread position: 19-159
Cow position: chr11:62789321-62789175 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 114
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 40, 0

Conread position: 19-159
Cow position: chr11:62812758-62812905 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 115
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 30, 0

Conread position: 19-159
Cow position: chr11:63165456-63165602 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 109
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 19-159
Cow position: chr11:67615059-67615202 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 75, 13

Conread position: 20-159
Cow position: chr11:17227458-17227600 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 41, 0

Conread position: 20-159
Cow position: chr11:30830430-30830569 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 114
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 79, 37

Conread position: 22-159
Cow position: chr11:4621247-4621386 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 39, 16

Conread position: 22-159
Cow position: chr11:33409078-33409217 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 89, 20

Conread position: 25-159
Cow position: chr11:36209004-36209142 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 32, 9

Conread position: 25-159
Cow position: chr11:52297034-52297176 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 113
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 14, 0

Conread position: 26-159
Cow position: chr11:17083126-17083265 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 29, 0

Conread position: 27-159
Cow position: chr11:27747104-27746968 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 34, 0

Conread position: 27-159
Cow position: chr11:69978151-69978015 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 104
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 78, 0

Conread position: 27-159
Cow position: chr11:80923139-80923279 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 13, 0

Conread position: 27-159
Cow position: chr11:83032863-83032725 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 105
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 34, 0

Conread position: 28-158
Cow position: chr11:65431702-65431564 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 32, 0

Conread position: 28-159
Cow position: chr11:897850-897718 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 101
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 11, 67

Conread position: 28-159
Cow position: chr11:11469472-11469603 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 106
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 81, 18

Conread position: 28-159
Cow position: chr11:15591294-15591430 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 110
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 10, 0

Conread position: 28-159
Cow position: chr11:31228139-31228007 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 11, 27

Conread position: 28-159
Cow position: chr11:40818446-40818582 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 114
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 11, 17

Conread position: 28-159
Cow position: chr11:46922702-46922841 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 28-159
Cow position: chr11:63977241-63977102 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 109
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 11, 0

Conread position: 28-159
Cow position: chr11:64335015-64334881 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 106
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 85, 0

Conread position: 28-159
Cow position: chr11:67614740-67614877 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 33, 0

Conread position: 28-159
Cow position: chr11:81928327-81928463 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 109
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 30, 110

Conread position: 28-159
Cow position: chr11:83043181-83043318 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 110
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 11, 73

Conread position: 29-159
Cow position: chr11:17676191-17676328 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 29-159
Cow position: chr11:30494172-30494039 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 79, 115

Conread position: 30-159
Cow position: chr11:33289286-33289418 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 102
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 31, 94

Conread position: 32-158
Cow position: chr11:22884587-22884458 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 33, 0

Conread position: 34-151
Cow position: chr11:2907355-2907476 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 74, 0

Conread position: 34-158
Cow position: chr11:58927752-58927624 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 25, 109

Conread position: 38-152
Cow position: chr11:46978228-46978344 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 98
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 23, 74

Conread position: 38-156
Cow position: chr11:6154743-6154618 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 23, 0

Conread position: 38-157
Cow position: chr11:4602326-4602199 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 103
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 21, 0

Conread position: 38-157
Cow position: chr11:25721830-25721950 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 100
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 22, 0

Conread position: 38-158
Cow position: chr11:21886005-21885878 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 107
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 63, 0

Conread position: 38-159
Cow position: chr11:3175843-3175718 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 99
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 56, 0

Conread position: 38-159
Cow position: chr11:4653085-4653210 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 97
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 38-159
Cow position: chr11:27248663-27248535 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 101
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 38-159
Cow position: chr11:29960467-29960340 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 106
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 23, 16

Conread position: 38-159
Cow position: chr11:30172474-30172349 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 103
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 23, 81

Conread position: 38-159
Cow position: chr11:49057558-49057436 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 23, 70

Conread position: 38-159
Cow position: chr11:74839778-74839655 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 103
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 65, 0

Conread position: 38-159
Cow position: chr11:80296684-80296808 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 101
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 61, 0

Conread position: 39-152
Cow position: chr11:24602132-24602022 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 93
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 9, 70

Conread position: 39-159
Cow position: chr11:15278844-15278968 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 66, 0

Conread position: 40-138
Cow position: chr11:80824076-80823975 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 84
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 40-159
Cow position: chr11:32586953-32587079 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 40-159
Cow position: chr11:51729447-51729331 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 102
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 21, 55

Conread position: 40-159
Cow position: chr11:62620549-62620421 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 103
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 40-159
Cow position: chr11:63478535-63478417 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 106
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 18, 60

Conread position: 43-158
Cow position: chr11:82732984-82733104 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 95
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 43-159
Cow position: chr11:8524948-8525070 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 16, 81

Conread position: 43-159
Cow position: chr11:42296457-42296575 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 99
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 18, 43

Conread position: 45-152
Cow position: chr11:25209553-25209447 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 90
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 63, 0

Conread position: 49-159
Cow position: chr11:905233-905338 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 92
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 25, 0

Conread position: 54-159
Cow position: chr11:10992418-10992311 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 87
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 58-159
Cow position: chr11:4411721-4411824 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 89
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 52, 0

Conread position: 59-159
Cow position: chr11:68206695-68206797 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 84
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 61-159
Cow position: chr11:62663092-62663190 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 83
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.