Cow genome map

Conread name: rpigcf0_004787.y1

Conread position: 3-159
Cow position: chr13:9612837-9612992 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 121
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 58, 29

Conread position: 7-159
Cow position: chr13:26698731-26698575 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 54, 25

Conread position: 13-158
Cow position: chr13:20217629-20217476 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 114
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 17-159
Cow position: chr13:27198691-27198831 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 116
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 91, 24

Conread position: 17-159
Cow position: chr13:30148781-30148640 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 109
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 88, 40

Conread position: 18-135
Cow position: chr13:23480801-23480683 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 90, 14

Conread position: 18-155
Cow position: chr13:52477870-52477727 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 112
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 43, 0

Conread position: 18-156
Cow position: chr13:48165964-48165826 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 106
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 45, 76

Conread position: 18-157
Cow position: chr13:15289143-15289000 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 118
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 43, 16

Conread position: 18-157
Cow position: chr13:37555097-37554952 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 116
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 13, 0

Conread position: 18-158
Cow position: chr13:6012945-6012804 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 42, 0

Conread position: 18-158
Cow position: chr13:6189825-6189678 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 43, 0

Conread position: 18-158
Cow position: chr13:17021948-17021803 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 116
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 37, 23

Conread position: 18-159
Cow position: chr13:151744-151886 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 109
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 7, 40

Conread position: 18-159
Cow position: chr13:13088811-13088952 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 119
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 40, 10

Conread position: 18-159
Cow position: chr13:14063745-14063598 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 121
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 43, 14

Conread position: 18-159
Cow position: chr13:17745031-17745171 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 114
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 21, 95

Conread position: 18-159
Cow position: chr13:18058474-18058327 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 117
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 21, 95

Conread position: 18-159
Cow position: chr13:21242299-21242161 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 118
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 39, 14

Conread position: 18-159
Cow position: chr13:22345499-22345351 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 118
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 43, 14

Conread position: 18-159
Cow position: chr13:23399544-23399689 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 118
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 43, 9

Conread position: 18-159
Cow position: chr13:23478675-23478825 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 119
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 43, 0

Conread position: 18-159
Cow position: chr13:23823254-23823111 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 43, 14

Conread position: 18-159
Cow position: chr13:25313379-25313226 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 121
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 7, 62

Conread position: 18-159
Cow position: chr13:28081490-28081645 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 122
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 13, 0

Conread position: 18-159
Cow position: chr13:28440761-28440612 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 21, 72

Conread position: 18-159
Cow position: chr13:37405487-37405634 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 117
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 14, 61

Conread position: 18-159
Cow position: chr13:53619775-53619927 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 43, 0

Conread position: 18-159
Cow position: chr13:54582648-54582797 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 13, 0

Conread position: 18-159
Cow position: chr13:55494748-55494603 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 120
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 7, 0

Conread position: 18-159
Cow position: chr13:57322924-57323069 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 43, 0

Conread position: 18-159
Cow position: chr13:57770208-57770063 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 40, 0

Conread position: 19-135
Cow position: chr13:15529470-15529350 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 96
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 12, 0

Conread position: 19-159
Cow position: chr13:21235892-21235748 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 108
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 42, 0

Conread position: 20-158
Cow position: chr13:58763833-58763696 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 11, 81

Conread position: 20-159
Cow position: chr13:20534677-20534819 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 83, 116

Conread position: 20-159
Cow position: chr13:20784373-20784513 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 117
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 41, 12

Conread position: 20-159
Cow position: chr13:21288307-21288162 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 114
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 41, 12

Conread position: 22-157
Cow position: chr13:53573757-53573890 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 103
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 39, 0

Conread position: 23-159
Cow position: chr13:14644834-14644974 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 115
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 38, 9

Conread position: 23-159
Cow position: chr13:37614420-37614273 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 118
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 16, 0

Conread position: 24-159
Cow position: chr13:47651635-47651493 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 27-157
Cow position: chr13:45073463-45073333 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 109
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 12, 79

Conread position: 27-159
Cow position: chr13:11808361-11808500 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 16, 0

Conread position: 27-159
Cow position: chr13:45439316-45439454 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 34, 0

Conread position: 27-159
Cow position: chr13:54389236-54389098 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 107
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 21, 0

Conread position: 28-150
Cow position: chr13:8450118-8450244 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 98
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 28-151
Cow position: chr13:19883249-19883121 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 33, 0

Conread position: 28-157
Cow position: chr13:25061967-25062097 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 101
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 11, 79

Conread position: 28-158
Cow position: chr13:41474662-41474794 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 108
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 72, 12

Conread position: 28-159
Cow position: chr13:14782133-14782265 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 71, 37

Conread position: 28-159
Cow position: chr13:17569312-17569178 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 33, 62

Conread position: 28-159
Cow position: chr13:20288123-20288261 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 33, 0

Conread position: 28-159
Cow position: chr13:21426035-21425907 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 11, 108

Conread position: 28-159
Cow position: chr13:25817313-25817450 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 11, 0

Conread position: 28-159
Cow position: chr13:35526411-35526272 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 11, 35

Conread position: 28-159
Cow position: chr13:42200405-42200542 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 33, 0

Conread position: 37-159
Cow position: chr13:13265358-13265484 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 104
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 24, 85

Conread position: 37-159
Cow position: chr13:27726997-27727116 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 103
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 24, 0

Conread position: 38-158
Cow position: chr13:11565634-11565759 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 103
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 23, 0

Conread position: 38-159
Cow position: chr13:6951375-6951502 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 99
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 25, 0

Conread position: 38-159
Cow position: chr13:13320592-13320720 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 103
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 22, 0

Conread position: 38-159
Cow position: chr13:15257572-15257444 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 103
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 16, 0

Conread position: 38-159
Cow position: chr13:19393091-19393215 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 61, 27

Conread position: 38-159
Cow position: chr13:21170323-21170449 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 104
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 23, 0

Conread position: 38-159
Cow position: chr13:23795584-23795464 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 101
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 23, 62

Conread position: 38-159
Cow position: chr13:24585843-24585970 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 101
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 23, 0

Conread position: 38-159
Cow position: chr13:33854886-33854761 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 103
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 70, 0

Conread position: 38-159
Cow position: chr13:34261030-34261154 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 20, 0

Conread position: 38-159
Cow position: chr13:35557316-35557188 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 104
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 23, 0

Conread position: 38-159
Cow position: chr13:38035634-38035761 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 23, 0

Conread position: 39-154
Cow position: chr13:30809579-30809455 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 40-158
Cow position: chr13:20821040-20820915 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 99
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 40-159
Cow position: chr13:41806573-41806695 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 67, 25

Conread position: 43-159
Cow position: chr13:24369385-24369505 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 15, 0

Conread position: 43-159
Cow position: chr13:43479861-43479983 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 100
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 17, 0

Conread position: 57-159
Cow position: chr13:20154822-20154924 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 85
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 59-159
Cow position: chr13:20666567-20666463 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 88
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 44, 0

Conread position: 59-159
Cow position: chr13:23478847-23478953 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 90
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 41, 0

Conread position: 68-159
Cow position: chr13:16790041-16790132 (view UCSC Genome Browser custom track)
Alignm length: 92
Alignm identity: 79
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.