Cow genome map
| Conread name: | rpigcf0_004787.y1 |
| Conread position: | 1-159 |
| Cow position: | chr18:49602846-49603014 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 2-159 |
| Cow position: | chr18:28930450-28930607 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 59, 36 |
| Conread position: | 13-158 |
| Cow position: | chr18:29648962-29648814 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 48, 19 |
| Conread position: | 14-159 |
| Cow position: | chr18:1144010-1144155 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 91, 118 |
| Conread position: | 14-159 |
| Cow position: | chr18:35367027-35367167 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 123, 18 |
| Conread position: | 15-127 |
| Cow position: | chr18:24835031-24834916 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 15-159 |
| Cow position: | chr18:47419973-47419828 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 93, 118 |
| Conread position: | 17-158 |
| Cow position: | chr18:17007306-17007450 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 43, 15 |
| Conread position: | 17-159 |
| Cow position: | chr18:9596353-9596212 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 44, 24 |
| Conread position: | 17-159 |
| Cow position: | chr18:18844190-18844045 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 17-159 |
| Cow position: | chr18:44205919-44206055 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 17-159 |
| Cow position: | chr18:50359503-50359361 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 42, 15 |
| Conread position: | 18-159 |
| Cow position: | chr18:4485771-4485628 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 43, 20 |
| Conread position: | 18-159 |
| Cow position: | chr18:11857071-11856930 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 39, 23 |
| Conread position: | 18-159 |
| Cow position: | chr18:20641323-20641467 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 18-159 |
| Cow position: | chr18:22568890-22569037 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 40, 59 |
| Conread position: | 18-159 |
| Cow position: | chr18:22789915-22790059 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 42, 19 |
| Conread position: | 18-159 |
| Cow position: | chr18:32189340-32189478 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 18-159 |
| Cow position: | chr18:41703012-41702863 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 18-159 |
| Cow position: | chr18:44262800-44262659 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 42, 14 |
| Conread position: | 18-159 |
| Cow position: | chr18:49038631-49038491 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 90, 14 |
| Conread position: | 19-148 |
| Cow position: | chr18:50095230-50095369 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 19-158 |
| Cow position: | chr18:28322827-28322687 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 11, 19 |
| Conread position: | 19-159 |
| Cow position: | chr18:1571064-1571208 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 41, 21 |
| Conread position: | 22-157 |
| Cow position: | chr18:18520626-18520770 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 22-159 |
| Cow position: | chr18:15809640-15809774 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 37, 16 |
| Conread position: | 22-159 |
| Cow position: | chr18:38985865-38985728 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 43, 78 |
| Conread position: | 22-159 |
| Cow position: | chr18:47824600-47824744 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 22-159 |
| Cow position: | chr18:49441017-49440870 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 24-159 |
| Cow position: | chr18:55120040-55119904 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 15, 83 |
| Conread position: | 26-158 |
| Cow position: | chr18:2146422-2146549 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 33, 67 |
| Conread position: | 26-159 |
| Cow position: | chr18:9010877-9010737 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 27-155 |
| Cow position: | chr18:22180612-22180744 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 27-157 |
| Cow position: | chr18:9089860-9089730 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-158 |
| Cow position: | chr18:43400554-43400685 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 12, 72 |
| Conread position: | 27-159 |
| Cow position: | chr18:2793807-2793942 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 27-159 |
| Cow position: | chr18:8170921-8171056 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 11, 90 |
| Conread position: | 27-159 |
| Cow position: | chr18:47801927-47802063 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 28-152 |
| Cow position: | chr18:47680678-47680548 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 32, 97 |
| Conread position: | 28-152 |
| Cow position: | chr18:47865235-47865105 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 32, 97 |
| Conread position: | 28-158 |
| Cow position: | chr18:11814464-11814334 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 33, 13 |
| Conread position: | 28-159 |
| Cow position: | chr18:9974161-9974299 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 11, 105 |
| Conread position: | 28-159 |
| Cow position: | chr18:10977045-10977182 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 28-159 |
| Cow position: | chr18:23630447-23630578 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 33, 72 |
| Conread position: | 28-159 |
| Cow position: | chr18:34444568-34444707 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 28-159 |
| Cow position: | chr18:50004538-50004676 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 29-159 |
| Cow position: | chr18:31672351-31672484 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 29-159 |
| Cow position: | chr18:45558310-45558177 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 34-158 |
| Cow position: | chr18:44548584-44548716 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 37-159 |
| Cow position: | chr18:35534991-35535117 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 38-152 |
| Cow position: | chr18:49017641-49017529 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 38-157 |
| Cow position: | chr18:29065234-29065354 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 23, 72 |
| Conread position: | 38-158 |
| Cow position: | chr18:56361228-56361351 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 38-159 |
| Cow position: | chr18:4907302-4907176 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 38-159 |
| Cow position: | chr18:6881200-6881327 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 38-159 |
| Cow position: | chr18:9366080-9365950 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 38-159 |
| Cow position: | chr18:11791076-11790950 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 38-159 |
| Cow position: | chr18:14225546-14225423 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 38-159 |
| Cow position: | chr18:15173162-15173042 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 38-159 |
| Cow position: | chr18:21143810-21143934 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 21, 55 |
| Conread position: | 38-159 |
| Cow position: | chr18:32290860-32290741 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 77, 19 |
| Conread position: | 38-159 |
| Cow position: | chr18:33159101-33158971 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 38-159 |
| Cow position: | chr18:42431934-42432060 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 38-159 |
| Cow position: | chr18:48713700-48713580 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 23, 61 |
| Conread position: | 38-159 |
| Cow position: | chr18:50276084-50276214 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 38-159 |
| Cow position: | chr18:50632287-50632413 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 23, 57 |
| Conread position: | 38-159 |
| Cow position: | chr18:51383240-51383368 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 40-159 |
| Cow position: | chr18:25598077-25598203 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 43-158 |
| Cow position: | chr18:47096576-47096459 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 95 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 43-159 |
| Cow position: | chr18:38228553-38228436 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 18, 77 |
| Conread position: | 43-159 |
| Cow position: | chr18:40047351-40047471 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 15, 91 |
| Conread position: | 43-159 |
| Cow position: | chr18:45903743-45903868 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 43-159 |
| Cow position: | chr18:50018589-50018703 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 54-159 |
| Cow position: | chr18:46452744-46452849 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 84 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.