Cow genome map

Conread name: rpigcf0_004787.y1

Conread position: 5-159
Cow position: chr3:53222212-53222051 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 120
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 18, 28

Conread position: 6-159
Cow position: chr3:23131970-23132131 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 128
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 55, 26

Conread position: 7-159
Cow position: chr3:15950721-15950875 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 54, 6

Conread position: 8-159
Cow position: chr3:15160711-15160558 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 125
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 53, 30

Conread position: 14-158
Cow position: chr3:34392035-34392182 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 47, 18

Conread position: 14-159
Cow position: chr3:31115084-31115232 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 119
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 20, 104

Conread position: 14-159
Cow position: chr3:54506899-54506745 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 120
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 14, 0

Conread position: 17-148
Cow position: chr3:33002573-33002439 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 101
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 44, 0

Conread position: 17-159
Cow position: chr3:6182043-6182189 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 23, 90

Conread position: 17-159
Cow position: chr3:70761933-70762085 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 121
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 22, 0

Conread position: 18-138
Cow position: chr3:17401561-17401437 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 43, 0

Conread position: 18-157
Cow position: chr3:26977723-26977579 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 45, 14

Conread position: 18-158
Cow position: chr3:19611165-19611313 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 9, 0

Conread position: 18-158
Cow position: chr3:74234370-74234225 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 121
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 15, 39

Conread position: 18-159
Cow position: chr3:7330952-7331089 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 115
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 91, 14

Conread position: 18-159
Cow position: chr3:8522965-8523116 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 122
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 21, 132

Conread position: 18-159
Cow position: chr3:8540685-8540545 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 114
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 36, 20

Conread position: 18-159
Cow position: chr3:10958060-10958202 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 116
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 90, 24

Conread position: 18-159
Cow position: chr3:15159218-15159069 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 119
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 41, 27

Conread position: 18-159
Cow position: chr3:18687090-18686944 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 9, 0

Conread position: 18-159
Cow position: chr3:23168881-23169028 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 119
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 76, 0

Conread position: 18-159
Cow position: chr3:24370579-24370439 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 120
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 13, 87

Conread position: 18-159
Cow position: chr3:27274714-27274566 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 43, 0

Conread position: 18-159
Cow position: chr3:39967309-39967451 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 115
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 90, 0

Conread position: 18-159
Cow position: chr3:49363291-49363147 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 116
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 44, 20

Conread position: 18-159
Cow position: chr3:53428730-53428879 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 10, 0

Conread position: 18-159
Cow position: chr3:55177566-55177708 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 117
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 43, 14

Conread position: 18-159
Cow position: chr3:57704519-57704371 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 117
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 39, 0

Conread position: 18-159
Cow position: chr3:59299760-59299614 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 43, 0

Conread position: 18-159
Cow position: chr3:66884843-66884992 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 43, 0

Conread position: 18-159
Cow position: chr3:67407180-67407328 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 118
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 42, 0

Conread position: 18-159
Cow position: chr3:68616152-68616292 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 114
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 44, 13

Conread position: 18-159
Cow position: chr3:74050517-74050664 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 120
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 21, 0

Conread position: 18-159
Cow position: chr3:77665365-77665514 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 8, 74

Conread position: 19-155
Cow position: chr3:24774830-24774695 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 20, 44

Conread position: 19-157
Cow position: chr3:22165231-22165376 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 115
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 42, 8

Conread position: 19-157
Cow position: chr3:61211278-61211417 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 20, 88

Conread position: 19-159
Cow position: chr3:39969680-39969824 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 117
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 42, 20

Conread position: 19-159
Cow position: chr3:44782525-44782377 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 11, 0

Conread position: 19-159
Cow position: chr3:59635486-59635350 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 114
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 39, 19

Conread position: 20-159
Cow position: chr3:23408180-23408320 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 116
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 39, 12

Conread position: 22-151
Cow position: chr3:16107192-16107321 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 97
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 22-159
Cow position: chr3:2637128-2636987 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 39, 0

Conread position: 24-159
Cow position: chr3:61224568-61224706 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 36, 84

Conread position: 26-159
Cow position: chr3:59605023-59604881 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 118
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 13, 0

Conread position: 27-152
Cow position: chr3:15051772-15051905 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 104
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 27-155
Cow position: chr3:80740731-80740604 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 97
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 74, 0

Conread position: 27-156
Cow position: chr3:64197003-64196867 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 32, 0

Conread position: 27-159
Cow position: chr3:52845733-52845594 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 110
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 34, 0

Conread position: 27-159
Cow position: chr3:71703636-71703513 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 105
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 28-157
Cow position: chr3:54946298-54946171 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 54, 0

Conread position: 28-159
Cow position: chr3:13329616-13329748 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 102
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 30, 72

Conread position: 28-159
Cow position: chr3:31804592-31804721 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 14, 71

Conread position: 28-159
Cow position: chr3:43895886-43896022 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 110
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 33, 0

Conread position: 28-159
Cow position: chr3:45882077-45881936 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 11, 0

Conread position: 28-159
Cow position: chr3:68565989-68565859 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 80, 23

Conread position: 28-159
Cow position: chr3:76156164-76156025 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 11, 0

Conread position: 28-159
Cow position: chr3:79093884-79094005 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 105
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 71, 0

Conread position: 29-159
Cow position: chr3:22078254-22078113 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 32, 0

Conread position: 29-159
Cow position: chr3:25290020-25289882 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 13, 0

Conread position: 32-159
Cow position: chr3:48072713-48072844 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 106
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 64, 0

Conread position: 32-159
Cow position: chr3:68707849-68707975 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 29, 75

Conread position: 34-158
Cow position: chr3:80565133-80565005 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 99
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 38-135
Cow position: chr3:75173433-75173526 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 83
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 59, 0

Conread position: 38-138
Cow position: chr3:35168136-35168238 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 87
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 20, 72

Conread position: 38-150
Cow position: chr3:76056121-76056238 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 38-150
Cow position: chr3:76270055-76269938 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 21, 0

Conread position: 38-158
Cow position: chr3:51403063-51402940 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 23, 73

Conread position: 38-159
Cow position: chr3:8349404-8349525 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 102
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 66, 33

Conread position: 38-159
Cow position: chr3:20021435-20021307 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 104
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 21, 0

Conread position: 38-159
Cow position: chr3:31361590-31361463 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 38-159
Cow position: chr3:48363236-48363110 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 23, 0

Conread position: 38-159
Cow position: chr3:59610552-59610680 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 101
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 38-159
Cow position: chr3:73701665-73701545 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 8, 0

Conread position: 38-159
Cow position: chr3:77654087-77653965 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 23, 69

Conread position: 39-148
Cow position: chr3:14000391-14000502 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 93
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 65, 93

Conread position: 40-159
Cow position: chr3:56943765-56943888 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 102
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 21, 0

Conread position: 41-154
Cow position: chr3:5737910-5737791 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 98
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 20, 98

Conread position: 41-159
Cow position: chr3:17531572-17531700 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 103
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 41-159
Cow position: chr3:19788671-19788792 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 67, 14

Conread position: 41-159
Cow position: chr3:74601276-74601152 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 19, 0

Conread position: 43-152
Cow position: chr3:22924218-22924330 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 90
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 44-158
Cow position: chr3:36418326-36418445 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 95
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 55-159
Cow position: chr3:32585292-32585188 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 84
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.