Cow genome map

Conread name: rpigcf0_004787.y1

Conread position: 8-158
Cow position: chr4:17186135-17186295 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 54, 0

Conread position: 12-159
Cow position: chr4:19578592-19578442 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 124
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 88, 63

Conread position: 13-159
Cow position: chr4:59001928-59002085 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 126
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 26, 0

Conread position: 14-150
Cow position: chr4:34919067-34919210 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 114
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 45, 0

Conread position: 14-159
Cow position: chr4:2770278-2770128 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 45, 0

Conread position: 16-159
Cow position: chr4:22331326-22331179 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 11, 46

Conread position: 17-151
Cow position: chr4:53134804-53134666 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 113
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 15, 86

Conread position: 17-155
Cow position: chr4:51851414-51851271 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 44, 10

Conread position: 17-159
Cow position: chr4:14965017-14964883 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 114
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 13, 0

Conread position: 17-159
Cow position: chr4:68590970-68590826 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 120
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 44, 21

Conread position: 18-152
Cow position: chr4:12713832-12713965 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 91, 21

Conread position: 18-152
Cow position: chr4:12716702-12716834 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 109
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 91, 21

Conread position: 18-154
Cow position: chr4:61193144-61193280 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 113
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 40, 20

Conread position: 18-156
Cow position: chr4:28701544-28701416 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 113
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 10, 0

Conread position: 18-159
Cow position: chr4:4084908-4085056 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 27, 40

Conread position: 18-159
Cow position: chr4:21506763-21506901 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 114
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 14, 27

Conread position: 18-159
Cow position: chr4:30944157-30944009 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 117
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 40, 0

Conread position: 18-159
Cow position: chr4:33838599-33838748 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 117
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 21, 0

Conread position: 18-159
Cow position: chr4:34510034-34509895 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 115
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 21, 81

Conread position: 18-159
Cow position: chr4:36290825-36290679 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 43, 0

Conread position: 18-159
Cow position: chr4:37915134-37915281 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 119
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 15, 0

Conread position: 18-159
Cow position: chr4:38156891-38157033 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 7, 23

Conread position: 18-159
Cow position: chr4:39007697-39007559 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 114
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 20, 0

Conread position: 18-159
Cow position: chr4:42608942-42608793 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 124
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 8, 15

Conread position: 18-159
Cow position: chr4:43579211-43579358 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 20, 0

Conread position: 18-159
Cow position: chr4:53126305-53126166 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 106
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 48, 37

Conread position: 18-159
Cow position: chr4:56395720-56395567 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 10, 0

Conread position: 18-159
Cow position: chr4:61887840-61887691 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 43, 10

Conread position: 18-159
Cow position: chr4:65463312-65463454 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 114
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 43, 22

Conread position: 19-158
Cow position: chr4:479598-479736 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 9, 40

Conread position: 19-159
Cow position: chr4:61524628-61524486 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 114
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 39, 8

Conread position: 20-159
Cow position: chr4:46404709-46404853 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 118
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 19, 7

Conread position: 21-158
Cow position: chr4:26659500-26659356 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 114
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 40, 0

Conread position: 21-159
Cow position: chr4:1026035-1026182 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 18, 0

Conread position: 21-159
Cow position: chr4:4318957-4319097 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 39, 17

Conread position: 22-158
Cow position: chr4:30250084-30250215 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 113
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 39, 0

Conread position: 22-159
Cow position: chr4:19090086-19089952 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 75, 0

Conread position: 22-159
Cow position: chr4:56805366-56805231 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 103
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 20, 0

Conread position: 24-158
Cow position: chr4:34699844-34699978 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 15, 79

Conread position: 26-148
Cow position: chr4:5276263-5276392 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 104
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 82, 0

Conread position: 27-155
Cow position: chr4:3688123-3687987 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 34, 0

Conread position: 27-158
Cow position: chr4:61391041-61391171 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 34, 14

Conread position: 27-159
Cow position: chr4:19504116-19503983 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 110
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 34, 64

Conread position: 27-159
Cow position: chr4:30769226-30769089 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 107
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 34, 109

Conread position: 27-159
Cow position: chr4:47048308-47048172 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 112
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 70, 0

Conread position: 27-159
Cow position: chr4:49880511-49880640 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 34, 68

Conread position: 27-159
Cow position: chr4:60302821-60302952 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 108
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 37, 73

Conread position: 28-158
Cow position: chr4:39569390-39569259 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 33, 71

Conread position: 28-159
Cow position: chr4:10558730-10558591 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 109
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 11, 0

Conread position: 28-159
Cow position: chr4:13194150-13194019 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 106
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 85, 33

Conread position: 28-159
Cow position: chr4:22215320-22215456 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 33, 0

Conread position: 28-159
Cow position: chr4:38935553-38935414 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 11, 121

Conread position: 28-159
Cow position: chr4:42423608-42423750 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 112
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 10, 0

Conread position: 28-159
Cow position: chr4:54785737-54785874 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 28-159
Cow position: chr4:59015774-59015643 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 11, 44

Conread position: 28-159
Cow position: chr4:68358519-68358385 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 108
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 34, 58

Conread position: 29-152
Cow position: chr4:62920689-62920810 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 13, 33

Conread position: 30-159
Cow position: chr4:27657163-27657031 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 111
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 31, 0

Conread position: 31-159
Cow position: chr4:41907392-41907527 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 108
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 30, 0

Conread position: 31-159
Cow position: chr4:55694360-55694229 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 99
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 30, 0

Conread position: 32-159
Cow position: chr4:12908558-12908428 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 106
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 29, 0

Conread position: 32-159
Cow position: chr4:23846865-23846996 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 29, 100

Conread position: 34-158
Cow position: chr4:36070889-36070758 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 105
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 27, 0

Conread position: 36-159
Cow position: chr4:27425886-27425766 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 103
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 69, 23

Conread position: 38-158
Cow position: chr4:21275430-21275545 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 96
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 65, 0

Conread position: 38-158
Cow position: chr4:28854093-28854219 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 105
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 23, 16

Conread position: 38-159
Cow position: chr4:85877-85749 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 105
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 22, 0

Conread position: 38-159
Cow position: chr4:4320810-4320936 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 99
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 38-159
Cow position: chr4:19745053-19744930 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 22, 63

Conread position: 38-159
Cow position: chr4:22482503-22482380 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 98
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 23, 63

Conread position: 38-159
Cow position: chr4:32602009-32601889 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 101
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 23, 68

Conread position: 38-159
Cow position: chr4:51083157-51083283 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 104
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 23, 86

Conread position: 39-158
Cow position: chr4:3519601-3519477 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 101
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 22, 0

Conread position: 42-159
Cow position: chr4:60506455-60506327 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 103
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 63, 0

Conread position: 43-152
Cow position: chr4:64488729-64488621 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 87
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 43-158
Cow position: chr4:19333561-19333442 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 65, 0

Conread position: 43-159
Cow position: chr4:17851082-17851198 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 50, 38

Conread position: 43-159
Cow position: chr4:40414450-40414573 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 16, 0

Conread position: 58-159
Cow position: chr4:68387948-68387847 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 85
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 59-159
Cow position: chr4:34983344-34983444 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 83
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.