Cow genome map

Conread name: rpigcf0_004787.y1

Conread position: 7-159
Cow position: chr5:15471167-15471017 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 111
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 90, 0

Conread position: 13-159
Cow position: chr5:31964788-31964652 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 25, 0

Conread position: 13-159
Cow position: chr5:49207085-49207239 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 14-159
Cow position: chr5:30276928-30276778 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 119
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 46, 17

Conread position: 16-159
Cow position: chr5:45845447-45845603 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 122
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 7, 126

Conread position: 17-159
Cow position: chr5:40109720-40109580 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 116
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 44, 21

Conread position: 17-159
Cow position: chr5:56028307-56028453 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 116
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 44, 15

Conread position: 17-159
Cow position: chr5:56327487-56327631 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 108
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 91, 0

Conread position: 18-156
Cow position: chr5:19626811-19626669 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 122
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 43, 23

Conread position: 18-156
Cow position: chr5:52849320-52849176 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 8, 0

Conread position: 18-158
Cow position: chr5:26548906-26549051 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 121
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 40, 14

Conread position: 18-159
Cow position: chr5:4728307-4728162 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 43, 75

Conread position: 18-159
Cow position: chr5:12434772-12434631 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 43, 14

Conread position: 18-159
Cow position: chr5:16668926-16668785 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 79, 31

Conread position: 18-159
Cow position: chr5:16893543-16893683 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 43, 21

Conread position: 18-159
Cow position: chr5:17537440-17537585 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 13, 0

Conread position: 18-159
Cow position: chr5:22242536-22242677 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 109
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 43, 67

Conread position: 18-159
Cow position: chr5:26147827-26147679 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 21, 26

Conread position: 18-159
Cow position: chr5:34288014-34288165 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 120
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 21, 0

Conread position: 18-159
Cow position: chr5:38833352-38833209 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 114
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 81, 69

Conread position: 18-159
Cow position: chr5:44446637-44446777 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 114
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 43, 82

Conread position: 18-159
Cow position: chr5:49474317-49474457 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 42, 14

Conread position: 18-159
Cow position: chr5:57074099-57074243 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 91, 39

Conread position: 18-159
Cow position: chr5:60207943-60207796 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 43, 105

Conread position: 18-159
Cow position: chr5:66287180-66287033 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 116
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 21, 9

Conread position: 18-159
Cow position: chr5:74050060-74049912 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 43, 9

Conread position: 19-138
Cow position: chr5:63940216-63940339 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 101
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 12, 70

Conread position: 19-158
Cow position: chr5:35190342-35190199 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 120
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 42, 13

Conread position: 19-159
Cow position: chr5:17105080-17104938 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 114
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 42, 13

Conread position: 19-159
Cow position: chr5:52192202-52192341 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 91, 13

Conread position: 19-159
Cow position: chr5:70591777-70591642 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 9, 0

Conread position: 19-159
Cow position: chr5:74643445-74643590 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 115
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 20, 0

Conread position: 20-159
Cow position: chr5:21721240-21721382 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 119
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 88, 20

Conread position: 22-158
Cow position: chr5:70572591-70572459 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 109
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 39, 10

Conread position: 22-159
Cow position: chr5:4981682-4981538 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 109
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 22-159
Cow position: chr5:30253974-30253829 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 39, 0

Conread position: 22-159
Cow position: chr5:60100697-60100558 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 112
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 9, 116

Conread position: 22-159
Cow position: chr5:60154002-60153863 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 9, 116

Conread position: 22-159
Cow position: chr5:64175895-64176038 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 9, 0

Conread position: 24-159
Cow position: chr5:35394207-35394345 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 105
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 37, 0

Conread position: 25-159
Cow position: chr5:30303111-30302979 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 109
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 36, 7

Conread position: 25-159
Cow position: chr5:41165313-41165176 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 34, 0

Conread position: 26-158
Cow position: chr5:52029634-52029493 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 112
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 47, 0

Conread position: 27-159
Cow position: chr5:14000869-14000733 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 104
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 13, 0

Conread position: 27-159
Cow position: chr5:29599323-29599458 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 115
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 34, 0

Conread position: 27-159
Cow position: chr5:46540831-46540968 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 112
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 34, 0

Conread position: 27-159
Cow position: chr5:57497197-57497336 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 34, 0

Conread position: 27-159
Cow position: chr5:58401794-58401657 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 104
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 32, 0

Conread position: 28-154
Cow position: chr5:66339301-66339168 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 28-157
Cow position: chr5:69383482-69383345 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 11, 102

Conread position: 28-159
Cow position: chr5:6245437-6245575 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 107
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 33, 0

Conread position: 28-159
Cow position: chr5:21617684-21617546 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 11, 0

Conread position: 28-159
Cow position: chr5:25462312-25462176 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 14, 0

Conread position: 28-159
Cow position: chr5:34562238-34562105 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 11, 55

Conread position: 28-159
Cow position: chr5:34787801-34787662 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 110
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 11, 0

Conread position: 28-159
Cow position: chr5:46512540-46512681 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 33, 0

Conread position: 28-159
Cow position: chr5:48104488-48104349 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 36, 0

Conread position: 28-159
Cow position: chr5:50824811-50824680 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 107
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 33, 82

Conread position: 28-159
Cow position: chr5:51298487-51298625 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 33, 0

Conread position: 28-159
Cow position: chr5:64061242-64061107 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 11, 0

Conread position: 29-159
Cow position: chr5:3582782-3582648 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 107
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 28, 0

Conread position: 32-158
Cow position: chr5:6876741-6876877 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 32-159
Cow position: chr5:55232599-55232726 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 101
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 96, 26

Conread position: 37-159
Cow position: chr5:22795425-22795302 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 96
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 26, 55

Conread position: 38-143
Cow position: chr5:12654691-12654802 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 93
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 23, 0

Conread position: 38-150
Cow position: chr5:18706173-18706064 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 95
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 21, 59

Conread position: 38-155
Cow position: chr5:21829082-21828959 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 70, 0

Conread position: 38-157
Cow position: chr5:56548784-56548661 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 101
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 22, 85

Conread position: 38-158
Cow position: chr5:18579107-18578981 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 20, 0

Conread position: 38-158
Cow position: chr5:40102530-40102651 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 52, 0

Conread position: 38-158
Cow position: chr5:44734509-44734636 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 101
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 23, 0

Conread position: 38-159
Cow position: chr5:34918561-34918434 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 106
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 23, 0

Conread position: 38-159
Cow position: chr5:37253641-37253517 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 103
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 23, 0

Conread position: 38-159
Cow position: chr5:46479029-46479154 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 60, 0

Conread position: 38-159
Cow position: chr5:51289383-51289506 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 102
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 23, 55

Conread position: 38-159
Cow position: chr5:60523945-60523820 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 104
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 23, 0

Conread position: 38-159
Cow position: chr5:60948350-60948220 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 22, 0

Conread position: 39-146
Cow position: chr5:44836753-44836643 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 91
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 22, 0

Conread position: 39-159
Cow position: chr5:18289335-18289210 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 98
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 22, 0

Conread position: 43-157
Cow position: chr5:17554822-17554941 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 98
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 18, 103

Conread position: 43-159
Cow position: chr5:45397778-45397657 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 101
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 18, 0

Conread position: 44-159
Cow position: chr5:72006285-72006402 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 92
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 46-138
Cow position: chr5:54425658-54425564 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 80
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 53, 0

Conread position: 47-159
Cow position: chr5:69461541-69461424 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 98
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 54, 113

Conread position: 50-157
Cow position: chr5:71724492-71724389 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 88
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 47, 0

Conread position: 57-157
Cow position: chr5:57686545-57686647 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 85
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 57-159
Cow position: chr5:47335221-47335116 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 87
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 57-159
Cow position: chr5:50942966-50943069 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 84
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 71, 0

Show alignments to all cow chromosomes.