Cow genome map
| Conread name: | rpigcf0_004787.y1 |
| Conread position: | 6-158 |
| Cow position: | chr7:32884420-32884266 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 53, 36 |
| Conread position: | 6-159 |
| Cow position: | chr7:9908061-9908218 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 13-159 |
| Cow position: | chr7:40567314-40567175 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 47, 91 |
| Conread position: | 14-157 |
| Cow position: | chr7:31170706-31170849 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 47, 14 |
| Conread position: | 14-157 |
| Cow position: | chr7:48721646-48721799 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 25, 122 |
| Conread position: | 15-156 |
| Cow position: | chr7:428530-428675 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 15-159 |
| Cow position: | chr7:35088916-35088761 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 15-159 |
| Cow position: | chr7:46856713-46856859 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 94, 12 |
| Conread position: | 16-159 |
| Cow position: | chr7:17951055-17950919 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 17-158 |
| Cow position: | chr7:32946320-32946173 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 17-159 |
| Cow position: | chr7:7510592-7510749 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 17-159 |
| Cow position: | chr7:29479771-29479631 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 43, 11 |
| Conread position: | 18-152 |
| Cow position: | chr7:12494868-12495009 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 18-158 |
| Cow position: | chr7:56556899-56557042 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 13, 93 |
| Conread position: | 18-159 |
| Cow position: | chr7:11784794-11784940 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 43, 22 |
| Conread position: | 18-159 |
| Cow position: | chr7:11958189-11958335 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 21, 9 |
| Conread position: | 18-159 |
| Cow position: | chr7:15951640-15951787 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 18-159 |
| Cow position: | chr7:17750586-17750738 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 18-159 |
| Cow position: | chr7:20180947-20181094 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 18-159 |
| Cow position: | chr7:25722421-25722562 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 13, 24 |
| Conread position: | 18-159 |
| Cow position: | chr7:26263401-26263547 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 90, 70 |
| Conread position: | 18-159 |
| Cow position: | chr7:46818246-46818390 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 20, 9 |
| Conread position: | 18-159 |
| Cow position: | chr7:51621644-51621502 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 43, 81 |
| Conread position: | 18-159 |
| Cow position: | chr7:51910363-51910225 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 77, 14 |
| Conread position: | 19-159 |
| Cow position: | chr7:600573-600428 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 7, 95 |
| Conread position: | 19-159 |
| Cow position: | chr7:38357396-38357536 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 12, 88 |
| Conread position: | 20-158 |
| Cow position: | chr7:30277568-30277437 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 41, 78 |
| Conread position: | 20-158 |
| Cow position: | chr7:59688787-59688643 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 20-159 |
| Cow position: | chr7:31497950-31497814 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 20-159 |
| Cow position: | chr7:36996609-36996466 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 41, 119 |
| Conread position: | 20-159 |
| Cow position: | chr7:40344623-40344770 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 21-159 |
| Cow position: | chr7:10414890-10415030 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 22-158 |
| Cow position: | chr7:6043888-6044031 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 22-159 |
| Cow position: | chr7:23672003-23671856 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 23-159 |
| Cow position: | chr7:8089410-8089269 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 24-159 |
| Cow position: | chr7:9449422-9449552 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 26-159 |
| Cow position: | chr7:12918335-12918476 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 26-159 |
| Cow position: | chr7:24022226-24022359 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 13, 73 |
| Conread position: | 27-152 |
| Cow position: | chr7:12385350-12385227 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 12, 36 |
| Conread position: | 28-154 |
| Cow position: | chr7:14029550-14029418 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 28-159 |
| Cow position: | chr7:11960635-11960500 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 28-159 |
| Cow position: | chr7:15559924-15559791 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 28-159 |
| Cow position: | chr7:30931740-30931873 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 33, 58 |
| Conread position: | 28-159 |
| Cow position: | chr7:31523789-31523649 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 28-159 |
| Cow position: | chr7:39416149-39416014 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 28-159 |
| Cow position: | chr7:40322851-40322718 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 34, 90 |
| Conread position: | 29-158 |
| Cow position: | chr7:10438571-10438433 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 29-159 |
| Cow position: | chr7:15533841-15533971 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 86, 32 |
| Conread position: | 30-151 |
| Cow position: | chr7:32259955-32260083 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 32-158 |
| Cow position: | chr7:5914469-5914336 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 37-148 |
| Cow position: | chr7:21316259-21316141 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 37-159 |
| Cow position: | chr7:68773988-68773868 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 38-158 |
| Cow position: | chr7:5026942-5027065 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 38-158 |
| Cow position: | chr7:11019234-11019359 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 38-158 |
| Cow position: | chr7:23819125-23819000 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 38-158 |
| Cow position: | chr7:25087475-25087352 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 38-158 |
| Cow position: | chr7:50021233-50021353 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 38-159 |
| Cow position: | chr7:4765072-4764949 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 20, 78 |
| Conread position: | 38-159 |
| Cow position: | chr7:5199325-5199447 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 23, 49 |
| Conread position: | 38-159 |
| Cow position: | chr7:8658747-8658619 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 38-159 |
| Cow position: | chr7:15548263-15548137 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 38-159 |
| Cow position: | chr7:15570270-15570142 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 38-159 |
| Cow position: | chr7:19329076-19329204 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 38-159 |
| Cow position: | chr7:33386149-33386026 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 63, 78 |
| Conread position: | 38-159 |
| Cow position: | chr7:47513453-47513581 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 38-159 |
| Cow position: | chr7:53053172-53053299 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 38-159 |
| Cow position: | chr7:63749249-63749372 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 38-159 |
| Cow position: | chr7:68144742-68144621 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 21, 47 |
| Conread position: | 39-157 |
| Cow position: | chr7:1763650-1763530 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 22, 71 |
| Conread position: | 39-159 |
| Cow position: | chr7:29300544-29300663 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 19, 72 |
| Conread position: | 39-159 |
| Cow position: | chr7:48020657-48020532 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 39-159 |
| Cow position: | chr7:49222220-49222338 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 22, 62 |
| Conread position: | 40-159 |
| Cow position: | chr7:9660500-9660378 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 40-159 |
| Cow position: | chr7:49105972-49106097 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 43-155 |
| Cow position: | chr7:17966898-17967012 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 43-158 |
| Cow position: | chr7:14317167-14317047 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 43-159 |
| Cow position: | chr7:36284926-36284806 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 43-159 |
| Cow position: | chr7:37394527-37394402 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 44-159 |
| Cow position: | chr7:22793562-22793448 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 17, 56 |
| Conread position: | 57-158 |
| Cow position: | chr7:53782608-53782712 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 86 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 59-159 |
| Cow position: | chr7:10563308-10563407 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 83 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
Show alignments to all cow chromosomes.