Cow genome map
| Conread name: | rpigcf0_004787.y1 |
| Conread position: | 1-159 |
| Cow position: | chr9:25556783-25556939 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 38, 111 |
| Conread position: | 3-159 |
| Cow position: | chr9:57131305-57131462 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 58, 25 |
| Conread position: | 7-159 |
| Cow position: | chr9:20090867-20091013 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 57, 92 |
| Conread position: | 10-159 |
| Cow position: | chr9:6189553-6189398 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 47, 82 |
| Conread position: | 13-159 |
| Cow position: | chr9:64302821-64302664 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 17-159 |
| Cow position: | chr9:45141781-45141633 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 17-159 |
| Cow position: | chr9:55256733-55256585 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 18-147 |
| Cow position: | chr9:42608595-42608723 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 42, 80 |
| Conread position: | 18-156 |
| Cow position: | chr9:50382498-50382358 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 41, 22 |
| Conread position: | 18-157 |
| Cow position: | chr9:44918459-44918315 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 43, 14 |
| Conread position: | 18-158 |
| Cow position: | chr9:11098633-11098486 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 18-158 |
| Cow position: | chr9:53120823-53120959 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 43, 22 |
| Conread position: | 18-158 |
| Cow position: | chr9:58132132-58131987 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 21, 131 |
| Conread position: | 18-159 |
| Cow position: | chr9:4241223-4241373 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 18-159 |
| Cow position: | chr9:5357838-5357979 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 16, 38 |
| Conread position: | 18-159 |
| Cow position: | chr9:17872285-17872143 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 43, 10 |
| Conread position: | 18-159 |
| Cow position: | chr9:19718516-19718373 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 43, 92 |
| Conread position: | 18-159 |
| Cow position: | chr9:23956159-23956013 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 18-159 |
| Cow position: | chr9:28747700-28747553 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 18-159 |
| Cow position: | chr9:36401843-36401698 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 18-159 |
| Cow position: | chr9:39011647-39011502 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 76, 14 |
| Conread position: | 18-159 |
| Cow position: | chr9:41785038-41785177 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 13, 83 |
| Conread position: | 18-159 |
| Cow position: | chr9:42586727-42586589 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 43, 21 |
| Conread position: | 18-159 |
| Cow position: | chr9:53762517-53762661 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 18-159 |
| Cow position: | chr9:58734083-58734225 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 42, 22 |
| Conread position: | 18-159 |
| Cow position: | chr9:60395231-60395081 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 19-159 |
| Cow position: | chr9:11873473-11873337 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 89, 19 |
| Conread position: | 19-159 |
| Cow position: | chr9:43757364-43757504 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 90, 13 |
| Conread position: | 20-159 |
| Cow position: | chr9:41728080-41728227 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 20-159 |
| Cow position: | chr9:61302821-61302967 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 22-159 |
| Cow position: | chr9:40984325-40984472 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 22-159 |
| Cow position: | chr9:45369362-45369225 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 86, 35 |
| Conread position: | 23-159 |
| Cow position: | chr9:32773043-32773180 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 16, 79 |
| Conread position: | 24-159 |
| Cow position: | chr9:8629087-8628950 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 41, 8 |
| Conread position: | 26-147 |
| Cow position: | chr9:60036453-60036574 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 35, 80 |
| Conread position: | 27-158 |
| Cow position: | chr9:388363-388226 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 27-159 |
| Cow position: | chr9:20847773-20847901 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 27-159 |
| Cow position: | chr9:52763926-52763793 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 28-151 |
| Cow position: | chr9:8066211-8066084 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 28-158 |
| Cow position: | chr9:9596124-9595986 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 28-158 |
| Cow position: | chr9:41653738-41653608 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 31, 87 |
| Conread position: | 28-159 |
| Cow position: | chr9:3789847-3789980 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 11, 114 |
| Conread position: | 28-159 |
| Cow position: | chr9:4341329-4341192 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 28-159 |
| Cow position: | chr9:6192631-6192493 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 11, 98 |
| Conread position: | 28-159 |
| Cow position: | chr9:6237662-6237526 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 28-159 |
| Cow position: | chr9:8636505-8636634 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 10, 68 |
| Conread position: | 28-159 |
| Cow position: | chr9:22440646-22440512 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 13, 94 |
| Conread position: | 28-159 |
| Cow position: | chr9:34024526-34024666 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 28-159 |
| Cow position: | chr9:37198955-37199094 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 28-159 |
| Cow position: | chr9:59897423-59897560 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 32-157 |
| Cow position: | chr9:9516916-9516788 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 27, 80 |
| Conread position: | 32-159 |
| Cow position: | chr9:55807466-55807598 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 37-159 |
| Cow position: | chr9:53323950-53323817 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 38-155 |
| Cow position: | chr9:5263342-5263463 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 38-157 |
| Cow position: | chr9:26279335-26279204 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 38-158 |
| Cow position: | chr9:36627960-36628084 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 23, 88 |
| Conread position: | 38-158 |
| Cow position: | chr9:43159593-43159718 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 38-159 |
| Cow position: | chr9:9403333-9403212 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 73, 20 |
| Conread position: | 38-159 |
| Cow position: | chr9:12773532-12773657 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 19, 108 |
| Conread position: | 38-159 |
| Cow position: | chr9:20579750-20579627 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 23, 72 |
| Conread position: | 38-159 |
| Cow position: | chr9:22360710-22360831 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 38-159 |
| Cow position: | chr9:26394510-26394382 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 38-159 |
| Cow position: | chr9:33151587-33151709 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 23, 62 |
| Conread position: | 38-159 |
| Cow position: | chr9:33248124-33248003 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 23, 35 |
| Conread position: | 38-159 |
| Cow position: | chr9:34286636-34286766 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 39-159 |
| Cow position: | chr9:7543418-7543296 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 39-159 |
| Cow position: | chr9:9459828-9459951 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 40-159 |
| Cow position: | chr9:24079145-24079269 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 43-158 |
| Cow position: | chr9:34958209-34958090 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 43-159 |
| Cow position: | chr9:21080416-21080530 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 73, 54 |
| Conread position: | 43-159 |
| Cow position: | chr9:34707467-34707344 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 43-159 |
| Cow position: | chr9:52998535-52998412 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 44-152 |
| Cow position: | chr9:58452226-58452115 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 92 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 50-159 |
| Cow position: | chr9:22466630-22466739 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 89 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.