Cow genome map
| Conread name: | rpigcf0_004787.y1 |
| Conread position: | 7-158 |
| Cow position: | chrX:11325856-11326007 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 32, 101 |
| Conread position: | 14-158 |
| Cow position: | chrX:45502378-45502236 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 91, 18 |
| Conread position: | 15-159 |
| Cow position: | chrX:29050487-29050336 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 15-159 |
| Cow position: | chrX:37177112-37176963 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 24, 52 |
| Conread position: | 16-159 |
| Cow position: | chrX:43028475-43028321 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 17-149 |
| Cow position: | chrX:20666661-20666794 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 47, 93 |
| Conread position: | 17-159 |
| Cow position: | chrX:23358876-23359025 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 17-159 |
| Cow position: | chrX:27668722-27668869 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 44, 10 |
| Conread position: | 17-159 |
| Cow position: | chrX:43059019-43059162 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 43, 11 |
| Conread position: | 18-151 |
| Cow position: | chrX:5919727-5919593 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 91, 39 |
| Conread position: | 18-157 |
| Cow position: | chrX:4399356-4399210 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 43, 9 |
| Conread position: | 18-158 |
| Cow position: | chrX:20957479-20957328 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 18-158 |
| Cow position: | chrX:34991600-34991454 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 43, 9 |
| Conread position: | 18-159 |
| Cow position: | chrX:2936195-2936046 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 18-159 |
| Cow position: | chrX:4152804-4152942 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 42, 86 |
| Conread position: | 18-159 |
| Cow position: | chrX:4289674-4289533 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 43, 82 |
| Conread position: | 18-159 |
| Cow position: | chrX:17744862-17744713 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 18-159 |
| Cow position: | chrX:20583899-20583755 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 90, 9 |
| Conread position: | 18-159 |
| Cow position: | chrX:23136973-23136829 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 15, 49 |
| Conread position: | 18-159 |
| Cow position: | chrX:27145842-27145693 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 18-159 |
| Cow position: | chrX:27261430-27261281 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 18-159 |
| Cow position: | chrX:31480203-31480057 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 43, 9 |
| Conread position: | 18-159 |
| Cow position: | chrX:32867110-32866964 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 18-159 |
| Cow position: | chrX:35986055-35985907 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 84, 39 |
| Conread position: | 18-159 |
| Cow position: | chrX:41011130-41010987 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 18-159 |
| Cow position: | chrX:42087068-42086916 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 18-159 |
| Cow position: | chrX:42875451-42875301 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 19-159 |
| Cow position: | chrX:9201778-9201637 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 42, 9 |
| Conread position: | 19-159 |
| Cow position: | chrX:42380875-42381023 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 45, 13 |
| Conread position: | 24-105 |
| Cow position: | chrX:5803732-5803652 (view UCSC Genome Browser custom track) |
| Alignm length: | 82 |
| Alignm identity: | 73 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 24-158 |
| Cow position: | chrX:31279693-31279834 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 25-159 |
| Cow position: | chrX:12972910-12972772 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 36, 7 |
| Conread position: | 26-158 |
| Cow position: | chrX:34532743-34532610 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 83, 35 |
| Conread position: | 26-159 |
| Cow position: | chrX:9251931-9252074 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 27-155 |
| Cow position: | chrX:12979604-12979741 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 27-158 |
| Cow position: | chrX:27431693-27431828 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 27-159 |
| Cow position: | chrX:14135906-14135767 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 27-159 |
| Cow position: | chrX:38094295-38094431 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 27-159 |
| Cow position: | chrX:39642397-39642533 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 32, 129 |
| Conread position: | 27-159 |
| Cow position: | chrX:40556230-40556370 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 27-159 |
| Cow position: | chrX:41215554-41215411 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 27-159 |
| Cow position: | chrX:47979529-47979386 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 28-156 |
| Cow position: | chrX:13893037-13892909 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 11, 73 |
| Conread position: | 28-159 |
| Cow position: | chrX:11656308-11656170 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 28-159 |
| Cow position: | chrX:23497466-23497602 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 11, 96 |
| Conread position: | 29-159 |
| Cow position: | chrX:13177255-13177387 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 30-159 |
| Cow position: | chrX:34836844-34836975 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 31-159 |
| Cow position: | chrX:31436696-31436563 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 32-147 |
| Cow position: | chrX:38726918-38727037 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 29, 54 |
| Conread position: | 38-152 |
| Cow position: | chrX:28940464-28940341 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 38-152 |
| Cow position: | chrX:31827635-31827748 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 38-152 |
| Cow position: | chrX:42216413-42216535 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 38-155 |
| Cow position: | chrX:33855006-33855127 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 38-158 |
| Cow position: | chrX:231806-231928 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 70, 19 |
| Conread position: | 38-158 |
| Cow position: | chrX:5487728-5487849 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 26, 70 |
| Conread position: | 38-159 |
| Cow position: | chrX:1087928-1088054 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 38-159 |
| Cow position: | chrX:3494830-3494958 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 38-159 |
| Cow position: | chrX:8327125-8326993 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 38-159 |
| Cow position: | chrX:8869184-8869313 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 38-159 |
| Cow position: | chrX:17525657-17525778 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 38-159 |
| Cow position: | chrX:21986081-21986202 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 23, 62 |
| Conread position: | 38-159 |
| Cow position: | chrX:22075015-22074889 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 21, 38 |
| Conread position: | 38-159 |
| Cow position: | chrX:25420544-25420420 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 15, 72 |
| Conread position: | 38-159 |
| Cow position: | chrX:34314241-34314113 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 38-159 |
| Cow position: | chrX:34792103-34792223 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 38-159 |
| Cow position: | chrX:41862575-41862452 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 75, 23 |
| Conread position: | 38-159 |
| Cow position: | chrX:42480047-42479922 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 38-159 |
| Cow position: | chrX:42927610-42927735 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 23, 37 |
| Conread position: | 40-159 |
| Cow position: | chrX:45110869-45110745 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 42-150 |
| Cow position: | chrX:37749776-37749886 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 88 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 43-158 |
| Cow position: | chrX:42331488-42331374 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 91 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 43-159 |
| Cow position: | chrX:32747937-32747821 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 43-159 |
| Cow position: | chrX:39419506-39419625 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 93 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 44-159 |
| Cow position: | chrX:35029721-35029837 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 17, 56 |
| Conread position: | 46-159 |
| Cow position: | chrX:918517-918627 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 57-158 |
| Cow position: | chrX:46291339-46291235 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 89 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 43, 76 |
| Conread position: | 57-159 |
| Cow position: | chrX:14275550-14275654 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 85 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
Show alignments to all cow chromosomes.