Cow genome map

Conread name: rpigcf0_007601.y1

Conread position: 11-395
Cow position: chr26:26238044-26238425 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 316, 241

Conread position: 13-323
Cow position: chr26:11262787-11263084 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 223

Conread position: 13-325
Cow position: chr26:2349127-2348820 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 0

Conread position: 13-325
Cow position: chr26:21535406-21535714 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 0

Conread position: 13-379
Cow position: chr26:22660232-22659883 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 220

Conread position: 13-397
Cow position: chr26:13806982-13806599 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 100

Conread position: 13-403
Cow position: chr26:1885050-1885444 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 150

Conread position: 13-403
Cow position: chr26:5679574-5679966 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 253

Conread position: 13-403
Cow position: chr26:9100934-9100560 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 354, 102

Conread position: 13-403
Cow position: chr26:12585494-12585104 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 246

Conread position: 13-403
Cow position: chr26:17429431-17429041 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 253

Conread position: 13-403
Cow position: chr26:23889454-23889844 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 248

Conread position: 13-403
Cow position: chr26:30625567-30625180 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 9

Conread position: 13-403
Cow position: chr26:35191503-35191114 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 209

Conread position: 13-403
Cow position: chr26:35394031-35393663 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 265
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 314, 41

Conread position: 15-322
Cow position: chr26:4753099-4753396 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 0

Conread position: 15-325
Cow position: chr26:7506667-7506362 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 178

Conread position: 38-403
Cow position: chr26:1915412-1915774 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 7

Conread position: 48-403
Cow position: chr26:46572-46217 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 211

Conread position: 89-403
Cow position: chr26:6844100-6843786 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 177

Conread position: 98-403
Cow position: chr26:386809-387114 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 161

Conread position: 163-324
Cow position: chr26:756416-756263 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 66, 0

Conread position: 165-403
Cow position: chr26:799877-800112 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 167
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 162, 70

Conread position: 166-341
Cow position: chr26:7459767-7459593 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 135
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 152, 93

Conread position: 194-403
Cow position: chr26:18877032-18877240 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 158
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 133, 54

Conread position: 213-403
Cow position: chr26:29433476-29433666 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 137
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 114, 46

Conread position: 413-580
Cow position: chr26:4854520-4854686 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 119
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 9, 37

Conread position: 417-567
Cow position: chr26:7224361-7224212 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 94, 6

Conread position: 429-588
Cow position: chr26:677988-677830 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 114
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 9, 0

Conread position: 430-579
Cow position: chr26:5168389-5168534 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 13, 56

Conread position: 430-586
Cow position: chr26:20291700-20291544 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 112
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 434-560
Cow position: chr26:5836824-5836698 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 98
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 434-580
Cow position: chr26:22892449-22892303 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 106
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 436-569
Cow position: chr26:12940398-12940531 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 101
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 436-586
Cow position: chr26:14175280-14175429 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 110
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 129, 0

Conread position: 436-588
Cow position: chr26:32563346-32563495 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 114
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 11, 89

Conread position: 441-567
Cow position: chr26:13818425-13818552 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 103
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 65, 110

Conread position: 441-571
Cow position: chr26:28374440-28374310 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 441-579
Cow position: chr26:33202067-33201929 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 102
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 441-581
Cow position: chr26:6714297-6714157 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 116
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 131, 17

Conread position: 441-585
Cow position: chr26:12145115-12144971 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 104
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 441-587
Cow position: chr26:7315104-7314959 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 85, 37

Conread position: 441-588
Cow position: chr26:19774296-19774146 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 118
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 127, 0

Conread position: 442-565
Cow position: chr26:1325761-1325884 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 96
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 442-565
Cow position: chr26:18876958-18876835 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 96
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 442-567
Cow position: chr26:10965590-10965464 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 102
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 111, 0

Conread position: 442-571
Cow position: chr26:6794149-6794283 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 98, 0

Conread position: 442-571
Cow position: chr26:12893423-12893295 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 99
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 91, 0

Conread position: 442-571
Cow position: chr26:17057682-17057812 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 98
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 71, 0

Conread position: 442-571
Cow position: chr26:29664155-29664024 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 105
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 64, 0

Conread position: 442-571
Cow position: chr26:33011664-33011537 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 99
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 62, 0

Conread position: 442-579
Cow position: chr26:22152231-22152368 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 104
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 442-581
Cow position: chr26:9104277-9104139 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 103
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 122, 0

Conread position: 442-581
Cow position: chr26:16921942-16922081 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 106
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 122, 63

Conread position: 442-581
Cow position: chr26:30254629-30254491 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 57, 0

Conread position: 442-583
Cow position: chr26:25074721-25074861 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 114
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 129, 0

Conread position: 442-585
Cow position: chr26:22354417-22354561 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 95, 0

Conread position: 442-585
Cow position: chr26:24453903-24453762 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 131, 52

Conread position: 442-586
Cow position: chr26:8352973-8353117 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 442-586
Cow position: chr26:11263645-11263787 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 122, 16

Conread position: 442-586
Cow position: chr26:16594495-16594354 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 107
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 61, 0

Conread position: 442-586
Cow position: chr26:32834573-32834431 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 17, 0

Conread position: 442-586
Cow position: chr26:33253312-33253168 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 442-587
Cow position: chr26:32571297-32571442 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 108
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 442-588
Cow position: chr26:17398580-17398726 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 106
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 442-588
Cow position: chr26:19671482-19671624 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 63, 0

Conread position: 442-588
Cow position: chr26:24240684-24240829 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 106
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 442-588
Cow position: chr26:26294188-26294046 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 17, 0

Conread position: 443-570
Cow position: chr26:6865029-6865156 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 103
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 443-571
Cow position: chr26:178237-178367 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 100
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 46, 0

Conread position: 444-570
Cow position: chr26:32836245-32836371 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 97
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 444-579
Cow position: chr26:33392400-33392535 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 104
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 444-580
Cow position: chr26:16796200-16796068 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 46, 0

Conread position: 446-580
Cow position: chr26:16435648-16435514 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 107
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 446-586
Cow position: chr26:18137278-18137418 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 101, 26

Conread position: 446-588
Cow position: chr26:31633736-31633878 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 105
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 449-573
Cow position: chr26:32601361-32601486 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 99
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 117, 0

Conread position: 449-574
Cow position: chr26:33567031-33566908 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 99
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 10, 0

Conread position: 449-578
Cow position: chr26:32403172-32403300 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 98
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 85, 0

Conread position: 449-579
Cow position: chr26:35449074-35449204 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 98
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 450-580
Cow position: chr26:5406991-5407121 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 450-581
Cow position: chr26:34060345-34060476 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 451-567
Cow position: chr26:32353707-32353591 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 451-571
Cow position: chr26:829818-829938 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 93
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 455-586
Cow position: chr26:6823176-6823305 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 104
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 56, 0

Conread position: 457-586
Cow position: chr26:7153887-7154016 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 99
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 15, 78

Conread position: 460-586
Cow position: chr26:15599504-15599379 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 96
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 91, 0

Conread position: 461-581
Cow position: chr26:19183224-19183106 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 18, 48

Conread position: 477-584
Cow position: chr26:26245131-26245024 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 89
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 100, 56

Show alignments to all cow chromosomes.