Cow genome map

Conread name: rpigcf0_007601.y1

Conread position: 13-401
Cow position: chr27:3232535-3232147 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 253

Conread position: 13-403
Cow position: chr27:165921-165530 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 247

Conread position: 13-403
Cow position: chr27:1082163-1081774 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 246

Conread position: 13-403
Cow position: chr27:1536180-1536558 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 9

Conread position: 13-403
Cow position: chr27:3653700-3653311 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 41

Conread position: 13-403
Cow position: chr27:4982371-4982761 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 253

Conread position: 13-403
Cow position: chr27:8972443-8972833 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 232

Conread position: 13-403
Cow position: chr27:10578945-10579336 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 247

Conread position: 13-403
Cow position: chr27:13353305-13353695 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 246

Conread position: 13-403
Cow position: chr27:14297206-14297596 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 246

Conread position: 13-403
Cow position: chr27:14380320-14380692 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 84

Conread position: 13-403
Cow position: chr27:15405643-15406011 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 354, 59

Conread position: 13-403
Cow position: chr27:16031398-16031008 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 246

Conread position: 13-403
Cow position: chr27:25801206-25800822 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 354, 239

Conread position: 13-403
Cow position: chr27:26329932-26330321 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 33

Conread position: 13-403
Cow position: chr27:27045182-27045563 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 162

Conread position: 13-406
Cow position: chr27:21451444-21451835 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 142

Conread position: 14-406
Cow position: chr27:8426857-8427250 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 246

Conread position: 15-403
Cow position: chr27:344922-344541 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 312, 191

Conread position: 16-403
Cow position: chr27:27556809-27557191 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 311, 8

Conread position: 24-403
Cow position: chr27:8290852-8291230 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 78

Conread position: 38-403
Cow position: chr27:15634317-15633954 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 7

Conread position: 50-402
Cow position: chr27:31249278-31249623 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 317, 208

Conread position: 106-395
Cow position: chr27:25884923-25885203 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 215
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 179, 69

Conread position: 129-403
Cow position: chr27:13316678-13316948 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 200
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 196, 106

Conread position: 135-403
Cow position: chr27:21349969-21350236 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 186
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 9, 61

Conread position: 153-402
Cow position: chr27:2681660-2681908 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 188
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 18, 85

Conread position: 415-577
Cow position: chr27:12596775-12596611 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 26, 17

Conread position: 416-584
Cow position: chr27:674036-674203 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 119
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 67, 13

Conread position: 416-586
Cow position: chr27:22723696-22723869 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 130
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 16, 0

Conread position: 416-588
Cow position: chr27:26481202-26481368 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 23, 0

Conread position: 427-585
Cow position: chr27:27064458-27064613 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 18, 0

Conread position: 429-588
Cow position: chr27:29593648-29593805 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 117
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 9, 0

Conread position: 431-586
Cow position: chr27:19508993-19508838 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 113
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 432-581
Cow position: chr27:26437142-26437291 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 107
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 433-581
Cow position: chr27:788819-788966 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 108
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 121, 0

Conread position: 434-586
Cow position: chr27:30489433-30489585 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 119
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 436-567
Cow position: chr27:15409061-15409192 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 98
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 436-568
Cow position: chr27:4944539-4944671 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 99
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 436-572
Cow position: chr27:28478555-28478419 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 101
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 436-580
Cow position: chr27:17397479-17397623 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 107
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 436-580
Cow position: chr27:22348465-22348321 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 104
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 438-581
Cow position: chr27:23594294-23594152 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 105
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 73, 0

Conread position: 441-561
Cow position: chr27:15332325-15332447 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 65, 0

Conread position: 441-571
Cow position: chr27:23545359-23545490 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 99
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 60, 0

Conread position: 441-580
Cow position: chr27:20812875-20812736 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 112
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 441-586
Cow position: chr27:23452431-23452287 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 106
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 44, 0

Conread position: 441-588
Cow position: chr27:4386091-4386238 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 115
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 441-588
Cow position: chr27:10979833-10979686 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 109
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 117, 107

Conread position: 442-566
Cow position: chr27:22225626-22225747 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 52, 0

Conread position: 442-568
Cow position: chr27:21393538-21393664 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 442-570
Cow position: chr27:26111945-26112074 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 98
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 442-575
Cow position: chr27:31017860-31017989 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 101
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 442-580
Cow position: chr27:1353552-1353414 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 102
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 442-580
Cow position: chr27:16705220-16705082 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 112
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 442-580
Cow position: chr27:24331689-24331552 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 105
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 27, 0

Conread position: 442-581
Cow position: chr27:1290882-1291018 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 104
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 111, 0

Conread position: 442-581
Cow position: chr27:2592512-2592372 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 52, 0

Conread position: 442-581
Cow position: chr27:6302499-6302637 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 104
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 62, 0

Conread position: 442-581
Cow position: chr27:20584487-20584623 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 53, 0

Conread position: 442-581
Cow position: chr27:27641043-27641180 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 63, 0

Conread position: 442-581
Cow position: chr27:28260567-28260705 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 104
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 41, 0

Conread position: 442-581
Cow position: chr27:30359376-30359237 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 104
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 442-583
Cow position: chr27:17918344-17918485 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 113
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 442-584
Cow position: chr27:29388641-29388498 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 107
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 104, 0

Conread position: 442-585
Cow position: chr27:22423485-22423341 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 73, 77

Conread position: 442-586
Cow position: chr27:1789170-1789313 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 107
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 442-586
Cow position: chr27:29319380-29319237 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 116, 0

Conread position: 442-586
Cow position: chr27:30908641-30908497 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 130, 75

Conread position: 442-588
Cow position: chr27:22454806-22454953 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 109, 0

Conread position: 442-588
Cow position: chr27:26919942-26920089 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 108
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 115, 0

Conread position: 442-588
Cow position: chr27:28034882-28035024 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 73, 0

Conread position: 442-588
Cow position: chr27:28245773-28245625 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 109
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 55, 0

Conread position: 442-588
Cow position: chr27:28518267-28518119 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 108
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 30, 0

Conread position: 442-588
Cow position: chr27:29380822-29380678 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 108
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 47, 0

Conread position: 443-567
Cow position: chr27:6319887-6319763 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 95
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 443-567
Cow position: chr27:7935188-7935313 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 58, 0

Conread position: 443-571
Cow position: chr27:1636967-1637095 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 98
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 443-581
Cow position: chr27:18435165-18435303 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 112
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 443-584
Cow position: chr27:8790773-8790916 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 48, 0

Conread position: 443-586
Cow position: chr27:6674247-6674106 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 51, 0

Conread position: 444-565
Cow position: chr27:19660899-19660778 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 93
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 444-588
Cow position: chr27:19452969-19452825 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 137, 121

Conread position: 445-585
Cow position: chr27:6541598-6541458 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 446-571
Cow position: chr27:26188794-26188670 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 96
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 39, 0

Conread position: 446-586
Cow position: chr27:27673051-27673190 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 106
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 37, 0

Conread position: 448-581
Cow position: chr27:17102859-17102727 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 102
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 82, 0

Conread position: 449-583
Cow position: chr27:19717877-19717743 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 99
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 450-577
Cow position: chr27:24477378-24477251 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 97
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 450-585
Cow position: chr27:27255949-27255814 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 104
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 451-571
Cow position: chr27:12191518-12191639 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 100
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 108, 0

Conread position: 455-583
Cow position: chr27:17918761-17918889 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 102
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 457-569
Cow position: chr27:16237581-16237469 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 88
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 457-581
Cow position: chr27:22268181-22268059 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 26, 0

Conread position: 460-580
Cow position: chr27:1184226-1184347 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 43, 51

Conread position: 460-580
Cow position: chr27:26400770-26400890 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 92
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 464-586
Cow position: chr27:29236511-29236389 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 93
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 464-586
Cow position: chr27:29658768-29658889 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 101, 59

Conread position: 464-588
Cow position: chr27:28541165-28541289 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 469-569
Cow position: chr27:18491498-18491399 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 86
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 89, 0

Conread position: 487-582
Cow position: chr27:27038913-27039008 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 80
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.