Cow genome map
| Conread name: | rpigcf0_013161.y1 |
| Conread position: | 2-410 |
| Cow position: | chr1:53369056-53368629 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 309 |
| Conread position: | 4-441 |
| Cow position: | chr1:82864657-82864220 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 47 |
| Conread position: | 4-458 |
| Cow position: | chr1:98559776-98559307 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 39 |
| Conread position: | 5-458 |
| Cow position: | chr1:89484964-89484486 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 47 |
| Conread position: | 7-454 |
| Cow position: | chr1:68845851-68846316 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 308 |
| Conread position: | 7-454 |
| Cow position: | chr1:102784386-102783934 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 121 |
| Conread position: | 9-387 |
| Cow position: | chr1:40603888-40603504 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 293 |
| Conread position: | 9-456 |
| Cow position: | chr1:56190556-56191023 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 297 |
| Conread position: | 9-456 |
| Cow position: | chr1:76617626-76618079 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 156 |
| Conread position: | 9-458 |
| Cow position: | chr1:8828883-8828415 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 297 |
| Conread position: | 9-458 |
| Cow position: | chr1:17937890-17938360 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 297 |
| Conread position: | 9-458 |
| Cow position: | chr1:22012102-22012567 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 159 |
| Conread position: | 9-458 |
| Cow position: | chr1:66491439-66490975 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 14 |
| Conread position: | 9-458 |
| Cow position: | chr1:97075635-97076107 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 266 |
| Conread position: | 9-459 |
| Cow position: | chr1:85774066-85773598 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 79 |
| Conread position: | 11-458 |
| Cow position: | chr1:25553663-25553198 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 243 |
| Conread position: | 15-456 |
| Cow position: | chr1:53650503-53650049 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 234 |
| Conread position: | 15-457 |
| Cow position: | chr1:68854788-68854350 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 126 |
| Conread position: | 15-458 |
| Cow position: | chr1:76699886-76700350 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 26 |
| Conread position: | 24-458 |
| Cow position: | chr1:55043416-55043869 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 110 |
| Conread position: | 25-458 |
| Cow position: | chr1:6196433-6196884 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 281 |
| Conread position: | 35-454 |
| Cow position: | chr1:28413008-28413431 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 81 |
| Conread position: | 38-458 |
| Cow position: | chr1:85338684-85338255 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 29 |
| Conread position: | 39-455 |
| Cow position: | chr1:58196622-58197057 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 43 |
| Conread position: | 51-458 |
| Cow position: | chr1:86599190-86599618 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 255 |
| Conread position: | 55-458 |
| Cow position: | chr1:100590957-100591379 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 193 |
| Conread position: | 106-384 |
| Cow position: | chr1:37661241-37660959 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 58 |
| Conread position: | 106-458 |
| Cow position: | chr1:38544955-38545322 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 10 |
| Conread position: | 106-458 |
| Cow position: | chr1:71792696-71792323 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 201 |
| Conread position: | 121-458 |
| Cow position: | chr1:44078676-44079026 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 181 |
| Conread position: | 178-458 |
| Cow position: | chr1:93111675-93111952 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 207 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 208, 25 |
| Conread position: | 197-458 |
| Cow position: | chr1:25052918-25053193 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 142, 81 |
| Conread position: | 209-388 |
| Cow position: | chr1:61728341-61728517 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 115, 27 |
| Conread position: | 214-437 |
| Cow position: | chr1:39702154-39701918 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 116, 78 |
| Conread position: | 215-449 |
| Cow position: | chr1:85163662-85163914 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 43, 88 |
| Conread position: | 218-386 |
| Cow position: | chr1:19145511-19145685 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 116, 84 |
| Conread position: | 232-458 |
| Cow position: | chr1:15049435-15049203 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 101, 17 |
| Conread position: | 234-496 |
| Cow position: | chr1:31391667-31391944 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 206 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 105, 68 |
| Conread position: | 236-458 |
| Cow position: | chr1:90622601-90622828 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 94, 44 |
Show alignments to all cow chromosomes.