Cow genome map
| Conread name: | rpigcf0_013161.y1 |
| Conread position: | 4-406 |
| Cow position: | chr3:72131725-72132114 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 67 |
| Conread position: | 4-447 |
| Cow position: | chr3:54862868-54863338 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 22 |
| Conread position: | 4-451 |
| Cow position: | chr3:16005060-16005523 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 23 |
| Conread position: | 4-458 |
| Cow position: | chr3:27867399-27866934 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 44 |
| Conread position: | 4-458 |
| Cow position: | chr3:63202968-63202509 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 128 |
| Conread position: | 4-458 |
| Cow position: | chr3:80564531-80564072 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 37 |
| Conread position: | 5-456 |
| Cow position: | chr3:24352417-24351961 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 36 |
| Conread position: | 6-451 |
| Cow position: | chr3:77550693-77550243 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 35 |
| Conread position: | 6-458 |
| Cow position: | chr3:75038098-75038570 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 300 |
| Conread position: | 7-387 |
| Cow position: | chr3:35578526-35578149 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 44 |
| Conread position: | 7-454 |
| Cow position: | chr3:63177082-63176623 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 149 |
| Conread position: | 7-458 |
| Cow position: | chr3:2851502-2851974 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 39 |
| Conread position: | 7-458 |
| Cow position: | chr3:24585486-24585959 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 66 |
| Conread position: | 7-458 |
| Cow position: | chr3:37982630-37983094 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 45 |
| Conread position: | 7-458 |
| Cow position: | chr3:75479593-75479133 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 60 |
| Conread position: | 7-460 |
| Cow position: | chr3:3884452-3884916 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 167 |
| Conread position: | 8-456 |
| Cow position: | chr3:19717530-19717995 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 167 |
| Conread position: | 9-384 |
| Cow position: | chr3:37009005-37009386 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 297 |
| Conread position: | 9-387 |
| Cow position: | chr3:11785091-11784712 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 170 |
| Conread position: | 9-458 |
| Cow position: | chr3:5887617-5887157 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 147 |
| Conread position: | 9-458 |
| Cow position: | chr3:38096641-38096172 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 297 |
| Conread position: | 9-458 |
| Cow position: | chr3:43189526-43189998 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 124 |
| Conread position: | 9-458 |
| Cow position: | chr3:59865220-59864751 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 297 |
| Conread position: | 9-458 |
| Cow position: | chr3:69930096-69930564 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 297 |
| Conread position: | 9-458 |
| Cow position: | chr3:73450573-73451042 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 49 |
| Conread position: | 12-458 |
| Cow position: | chr3:59603535-59603073 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 25 |
| Conread position: | 30-458 |
| Cow position: | chr3:13275558-13276006 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 276 |
| Conread position: | 41-456 |
| Cow position: | chr3:50921735-50921312 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 202 |
| Conread position: | 57-496 |
| Cow position: | chr3:37015909-37015465 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 295 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 52, 10 |
| Conread position: | 67-458 |
| Cow position: | chr3:6897509-6897098 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 97 |
| Conread position: | 120-456 |
| Cow position: | chr3:26993747-26993398 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 182 |
| Conread position: | 159-458 |
| Cow position: | chr3:174084-173776 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 143 |
| Conread position: | 171-458 |
| Cow position: | chr3:22353189-22352885 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 33, 112 |
| Conread position: | 189-369 |
| Cow position: | chr3:63238539-63238709 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 206-458 |
| Cow position: | chr3:6865189-6864930 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 194 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 182, 96 |
| Conread position: | 216-458 |
| Cow position: | chr3:77226246-77226004 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 50, 13 |
| Conread position: | 232-387 |
| Cow position: | chr3:78261635-78261796 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 107, 70 |
| Conread position: | 269-459 |
| Cow position: | chr3:77726908-77726721 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 31, 123 |
Show alignments to all cow chromosomes.