Cow genome map


           Conread name:
           rpigcf0_016341.y1
        

               Conread position:
               234-466
               

               Cow position:
               chr29:19514214-19514448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               167
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               49, 12
               

               Conread position:
               236-361
               

               Cow position:
               chr29:19253931-19254056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               127
               

               Alignm identity:
               98
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               7, 39
               

               Conread position:
               236-365
               

               Cow position:
               chr29:4520224-4520098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               109
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               237-466
               

               Cow position:
               chr29:25088641-25088393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               193
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               130, 8
               

               Conread position:
               239-379
               

               Cow position:
               chr29:13458946-13458810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               111
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               239-394
               

               Cow position:
               chr29:2984771-2984620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               239-433
               

               Cow position:
               chr29:4625108-4625302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               121, 35
               

               Conread position:
               240-466
               

               Cow position:
               chr29:7666144-7666371 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               175
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               167, 34
               

               Conread position:
               241-465
               

               Cow position:
               chr29:27833874-27833646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               169
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               72, 29
               

               Conread position:
               242-466
               

               Cow position:
               chr29:17668384-17668164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               163
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               42, 31
               

               Conread position:
               246-391
               

               Cow position:
               chr29:41076142-41076292 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               113
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               246-466
               

               Cow position:
               chr29:686311-686533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               186
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 28
               

               Conread position:
               249-390
               

               Cow position:
               chr29:31928859-31928716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               117
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               66, 25
               

               Conread position:
               249-464
               

               Cow position:
               chr29:6014979-6014757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               168
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               118, 25
               

               Conread position:
               250-392
               

               Cow position:
               chr29:41530727-41530585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               111
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               261-402
               

               Cow position:
               chr29:10296574-10296715 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               110
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               101, 13
               

               Conread position:
               273-466
               

               Cow position:
               chr29:12309849-12309655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               156
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               134, 79
               

               Conread position:
               274-464
               

               Cow position:
               chr29:34734329-34734517 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               21, 34
               
Show alignments to all cow chromosomes.