Cow genome map
| Conread name: | rpigcf0_016341.y1 |
| Conread position: | 225-365 |
| Cow position: | chr3:51578441-51578580 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 63, 13 |
| Conread position: | 231-466 |
| Cow position: | chr3:2036171-2035934 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 182 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 52, 15 |
| Conread position: | 232-405 |
| Cow position: | chr3:46160971-46161145 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 11, 43 |
| Conread position: | 232-405 |
| Cow position: | chr3:46901069-46900895 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 74, 41 |
| Conread position: | 234-344 |
| Cow position: | chr3:4861558-4861451 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 92 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 234-365 |
| Cow position: | chr3:70899764-70899641 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 234-454 |
| Cow position: | chr3:17222275-17222502 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 133, 11 |
| Conread position: | 234-463 |
| Cow position: | chr3:45312919-45312691 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 152, 42 |
| Conread position: | 234-464 |
| Cow position: | chr3:53046788-53047003 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 234-466 |
| Cow position: | chr3:2674897-2674665 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 12 |
| Conread position: | 236-389 |
| Cow position: | chr3:68583135-68583286 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 236-452 |
| Cow position: | chr3:71497275-71497496 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 34 |
| Conread position: | 236-460 |
| Cow position: | chr3:65020203-65019974 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 52, 10 |
| Conread position: | 236-466 |
| Cow position: | chr3:2903422-2903662 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 131, 10 |
| Conread position: | 236-466 |
| Cow position: | chr3:34270791-34270570 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 179 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 236-466 |
| Cow position: | chr3:51012665-51012902 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 10 |
| Conread position: | 237-391 |
| Cow position: | chr3:71161661-71161508 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 43, 9 |
| Conread position: | 237-447 |
| Cow position: | chr3:29310981-29311194 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 37, 9 |
| Conread position: | 237-464 |
| Cow position: | chr3:18245553-18245778 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 159, 9 |
| Conread position: | 237-464 |
| Cow position: | chr3:59603834-59603605 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 112, 9 |
| Conread position: | 237-465 |
| Cow position: | chr3:54809026-54808796 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 174 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 130, 9 |
| Conread position: | 237-466 |
| Cow position: | chr3:63945109-63945340 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 112, 9 |
| Conread position: | 237-466 |
| Cow position: | chr3:77188304-77188085 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 177 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 239-387 |
| Cow position: | chr3:66900876-66901024 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 127, 35 |
| Conread position: | 239-465 |
| Cow position: | chr3:44534901-44535123 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 147, 35 |
| Conread position: | 239-465 |
| Cow position: | chr3:53904052-53903826 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 35 |
| Conread position: | 239-466 |
| Cow position: | chr3:79884622-79884850 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 8 |
| Conread position: | 239-466 |
| Cow position: | chr3:82056252-82056472 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 239-467 |
| Cow position: | chr3:1133234-1133457 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 176 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 66, 24 |
| Conread position: | 240-405 |
| Cow position: | chr3:70401767-70401603 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 240-466 |
| Cow position: | chr3:28675854-28675625 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 173 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 120, 34 |
| Conread position: | 240-466 |
| Cow position: | chr3:59588385-59588155 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 11, 35 |
| Conread position: | 241-384 |
| Cow position: | chr3:42483764-42483621 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 129, 33 |
| Conread position: | 241-466 |
| Cow position: | chr3:59630638-59630864 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 30 |
| Conread position: | 244-466 |
| Cow position: | chr3:55085322-55085554 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 246-365 |
| Cow position: | chr3:84000471-84000353 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 246-466 |
| Cow position: | chr3:14465848-14466068 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 42, 27 |
| Conread position: | 246-466 |
| Cow position: | chr3:20802771-20802992 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 28 |
| Conread position: | 248-386 |
| Cow position: | chr3:30907778-30907916 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 121, 26 |
| Conread position: | 257-450 |
| Cow position: | chr3:56161155-56160957 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 110, 17 |
| Conread position: | 273-459 |
| Cow position: | chr3:9663354-9663544 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 273-466 |
| Cow position: | chr3:48241454-48241257 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 159 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 93, 0 |
Show alignments to all cow chromosomes.