Cow genome map
| Conread name: | rpigcf0_016341.y1 |
| Conread position: | 225-381 |
| Cow position: | chr5:56820333-56820487 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 142, 49 |
| Conread position: | 225-464 |
| Cow position: | chr5:3280942-3281181 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 63, 45 |
| Conread position: | 225-466 |
| Cow position: | chr5:41951159-41951396 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 13 |
| Conread position: | 227-380 |
| Cow position: | chr5:26541219-26541070 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 12, 21 |
| Conread position: | 228-466 |
| Cow position: | chr5:18574099-18573855 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 49 |
| Conread position: | 230-466 |
| Cow position: | chr5:54713815-54714057 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 186 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 139, 32 |
| Conread position: | 232-387 |
| Cow position: | chr5:43992242-43992092 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 56, 14 |
| Conread position: | 233-365 |
| Cow position: | chr5:49362067-49362201 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 63, 40 |
| Conread position: | 233-466 |
| Cow position: | chr5:41522875-41523105 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 41 |
| Conread position: | 234-384 |
| Cow position: | chr5:30253659-30253515 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 234-410 |
| Cow position: | chr5:56753646-56753470 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 50, 34 |
| Conread position: | 236-360 |
| Cow position: | chr5:8994650-8994771 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 236-384 |
| Cow position: | chr5:3771764-3771616 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 23, 33 |
| Conread position: | 236-428 |
| Cow position: | chr5:40889365-40889560 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 158 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 7, 39 |
| Conread position: | 236-462 |
| Cow position: | chr5:28224370-28224144 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 38 |
| Conread position: | 236-465 |
| Cow position: | chr5:34528478-34528250 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 9 |
| Conread position: | 236-466 |
| Cow position: | chr5:32140792-32141012 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 176 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 236-466 |
| Cow position: | chr5:39447614-39447850 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 9 |
| Conread position: | 236-466 |
| Cow position: | chr5:45705966-45705732 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 39 |
| Conread position: | 236-466 |
| Cow position: | chr5:47313392-47313158 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 182 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 7, 39 |
| Conread position: | 236-466 |
| Cow position: | chr5:63967729-63967956 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 38 |
| Conread position: | 236-468 |
| Cow position: | chr5:6503961-6504184 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 7, 39 |
| Conread position: | 237-387 |
| Cow position: | chr5:32963712-32963862 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 237-393 |
| Cow position: | chr5:1247194-1247036 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 12, 38 |
| Conread position: | 237-438 |
| Cow position: | chr5:62173588-62173386 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 43, 9 |
| Conread position: | 237-462 |
| Cow position: | chr5:38683271-38683053 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 237-466 |
| Cow position: | chr5:14635638-14635869 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 123, 9 |
| Conread position: | 237-466 |
| Cow position: | chr5:66065046-66064813 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 37, 9 |
| Conread position: | 238-349 |
| Cow position: | chr5:56137128-56137238 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 90 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 239-462 |
| Cow position: | chr5:39094467-39094242 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 35 |
| Conread position: | 239-464 |
| Cow position: | chr5:54311247-54311010 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 131, 35 |
| Conread position: | 239-466 |
| Cow position: | chr5:26133159-26133389 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 35 |
| Conread position: | 239-466 |
| Cow position: | chr5:61840101-61839873 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 174 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 130, 35 |
| Conread position: | 240-384 |
| Cow position: | chr5:36868653-36868515 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 130, 24 |
| Conread position: | 240-464 |
| Cow position: | chr5:15089105-15088876 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 54, 124 |
| Conread position: | 246-464 |
| Cow position: | chr5:47559628-47559849 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 120, 28 |
| Conread position: | 246-466 |
| Cow position: | chr5:2500280-2500508 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 107, 138 |
| Conread position: | 247-368 |
| Cow position: | chr5:47547811-47547930 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 247-429 |
| Cow position: | chr5:63917503-63917685 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 247-466 |
| Cow position: | chr5:62826847-62827070 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 27 |
Show alignments to all cow chromosomes.