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Cow genome map

           
Conread name:
           
rpigcf0_017685.y1
        

               
Conread position:
               
28-462
               

               
Cow position:
               
chr1:59650490-59650043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
13, 41
               

               
Conread position:
               
31-192
               

               
Cow position:
               
chr1:4391030-4391205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
23, 8
               

               
Conread position:
               
31-463
               

               
Cow position:
               
chr1:87888625-87888178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
105, 127
               

               
Conread position:
               
32-262
               

               
Cow position:
               
chr1:74081767-74082004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
28, 11
               

               
Conread position:
               
33-463
               

               
Cow position:
               
chr1:42873744-42874171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
29, 18
               

               
Conread position:
               
35-461
               

               
Cow position:
               
chr1:25793229-25793662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
166, 14
               

               
Conread position:
               
36-169
               

               
Cow position:
               
chr1:4425871-4426003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
102, 20
               

               
Conread position:
               
38-434
               

               
Cow position:
               
chr1:12222373-12222800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
22, 139
               

               
Conread position:
               
39-356
               

               
Cow position:
               
chr1:53651208-53650902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
29, 12
               

               
Conread position:
               
39-468
               

               
Cow position:
               
chr1:25383893-25383433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 24
               

               
Conread position:
               
39-577
               

               
Cow position:
               
chr1:28177206-28176643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 16
               

               
Conread position:
               
40-211
               

               
Cow position:
               
chr1:40284420-40284598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
7, 89
               

               
Conread position:
               
40-314
               

               
Cow position:
               
chr1:30983264-30983562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
28, 250
               

               
Conread position:
               
41-191
               

               
Cow position:
               
chr1:100573404-100573560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
97, 15
               

               
Conread position:
               
42-263
               

               
Cow position:
               
chr1:102648505-102648256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
15, 243
               

               
Conread position:
               
43-461
               

               
Cow position:
               
chr1:35170529-35170114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
118, 6
               

               
Conread position:
               
45-461
               

               
Cow position:
               
chr1:46839810-46839372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
78, 41
               

               
Conread position:
               
46-187
               

               
Cow position:
               
chr1:73644286-73644436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
46-191
               

               
Cow position:
               
chr1:83222209-83222051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
14, 57
               

               
Conread position:
               
46-221
               

               
Cow position:
               
chr1:20537422-20537236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
46-234
               

               
Cow position:
               
chr1:79178851-79178646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
46-242
               

               
Cow position:
               
chr1:89437508-89437710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
92, 150
               

               
Conread position:
               
46-409
               

               
Cow position:
               
chr1:55428733-55429124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 246
               

               
Conread position:
               
46-433
               

               
Cow position:
               
chr1:9534367-9533980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
14, 52
               

               
Conread position:
               
46-460
               

               
Cow position:
               
chr1:41697271-41696833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 9
               

               
Conread position:
               
46-463
               

               
Cow position:
               
chr1:56477804-56477370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 20
               

               
Conread position:
               
46-463
               

               
Cow position:
               
chr1:61391577-61392016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 21
               

               
Conread position:
               
46-471
               

               
Cow position:
               
chr1:61565001-61564560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 93
               

               
Conread position:
               
46-581
               

               
Cow position:
               
chr1:22824129-22823569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 259
               

               
Conread position:
               
47-220
               

               
Cow position:
               
chr1:87934062-87934239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
91, 20
               

               
Conread position:
               
47-463
               

               
Cow position:
               
chr1:1956121-1956553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 19
               

               
Conread position:
               
47-463
               

               
Cow position:
               
chr1:66355515-66355933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
177, 9
               

               
Conread position:
               
48-463
               

               
Cow position:
               
chr1:22628438-22628862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 47
               

               
Conread position:
               
48-463
               

               
Cow position:
               
chr1:97611455-97611877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 40
               

               
Conread position:
               
48-467
               

               
Cow position:
               
chr1:85783738-85783297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
40, 19
               

               
Conread position:
               
49-188
               

               
Cow position:
               
chr1:23698832-23698691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
89, 105
               

               
Conread position:
               
49-191
               

               
Cow position:
               
chr1:37470705-37470567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
49-191
               

               
Cow position:
               
chr1:68688796-68688650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
49-192
               

               
Cow position:
               
chr1:40212131-40212278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
49-210
               

               
Cow position:
               
chr1:91743245-91743420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
22, 7
               

               
Conread position:
               
49-255
               

               
Cow position:
               
chr1:242769-242542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
49-268
               

               
Cow position:
               
chr1:79630702-79630930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
28, 58
               

               
Conread position:
               
49-279
               

               
Cow position:
               
chr1:72422189-72422446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
89, 246
               

               
Conread position:
               
49-281
               

               
Cow position:
               
chr1:95835578-95835836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
86, 240
               

               
Conread position:
               
49-298
               

               
Cow position:
               
chr1:81481166-81481440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
49-320
               

               
Cow position:
               
chr1:43547852-43548135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
138, 47
               

               
Conread position:
               
49-340
               

               
Cow position:
               
chr1:42541808-42541499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 39
               

               
Conread position:
               
49-354
               

               
Cow position:
               
chr1:22943808-22944137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
20, 254
               

               
Conread position:
               
49-368
               

               
Cow position:
               
chr1:84103841-84104178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
82, 218
               

               
Conread position:
               
49-371
               

               
Cow position:
               
chr1:72105617-72105286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 44
               

               
Conread position:
               
49-380
               

               
Cow position:
               
chr1:8128762-8129104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
144, 50
               

               
Conread position:
               
49-388
               

               
Cow position:
               
chr1:39224721-39225069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 84
               

               
Conread position:
               
49-395
               

               
Cow position:
               
chr1:31272238-31272595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
140, 26
               

               
Conread position:
               
49-433
               

               
Cow position:
               
chr1:34767511-34767133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 119
               

               
Conread position:
               
49-435
               

               
Cow position:
               
chr1:40192485-40192874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
10, 140
               

               
Conread position:
               
49-461
               

               
Cow position:
               
chr1:70538827-70538381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 325
               

               
Conread position:
               
49-461
               

               
Cow position:
               
chr1:72068617-72069049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 29
               

               
Conread position:
               
49-462
               

               
Cow position:
               
chr1:42256286-42256733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
12, 48
               

               
Conread position:
               
49-462
               

               
Cow position:
               
chr1:61721193-61721589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
141, 5
               

               
Conread position:
               
49-463
               

               
Cow position:
               
chr1:10778771-10778349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 48
               

               
Conread position:
               
49-463
               

               
Cow position:
               
chr1:35162622-35162179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 60
               

               
Conread position:
               
49-463
               

               
Cow position:
               
chr1:43505741-43505299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 224
               

               
Conread position:
               
49-463
               

               
Cow position:
               
chr1:45019592-45020028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 23
               

               
Conread position:
               
49-463
               

               
Cow position:
               
chr1:53521122-53520682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 44
               

               
Conread position:
               
49-463
               

               
Cow position:
               
chr1:56225683-56225251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 38
               

               
Conread position:
               
49-463
               

               
Cow position:
               
chr1:78857109-78857547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 191
               

               
Conread position:
               
49-469
               

               
Cow position:
               
chr1:100399988-100400432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 5
               

               
Conread position:
               
50-148
               

               
Cow position:
               
chr1:76081054-76080955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
50-191
               

               
Cow position:
               
chr1:8134141-8133990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
78, 120
               

               
Conread position:
               
50-235
               

               
Cow position:
               
chr1:40078007-40077812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
10, 53
               

               
Conread position:
               
50-239
               

               
Cow position:
               
chr1:39095702-39095508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
10, 43
               

               
Conread position:
               
50-397
               

               
Cow position:
               
chr1:14205951-14206312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
82, 13
               

               
Conread position:
               
50-460
               

               
Cow position:
               
chr1:69694793-69695230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 18
               

               
Conread position:
               
50-463
               

               
Cow position:
               
chr1:39417915-39418343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 49
               

               
Conread position:
               
50-463
               

               
Cow position:
               
chr1:71119738-71119287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 119
               

               
Conread position:
               
50-472
               

               
Cow position:
               
chr1:75745076-75744628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 38
               

               
Conread position:
               
50-490
               

               
Cow position:
               
chr1:77462556-77462115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 46
               

               
Conread position:
               
51-263
               

               
Cow position:
               
chr1:32217453-32217229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
87, 218
               

               
Conread position:
               
51-287
               

               
Cow position:
               
chr1:523317-523084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
117, 79
               

               
Conread position:
               
51-425
               

               
Cow position:
               
chr1:42397981-42398383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
76, 253
               

               
Conread position:
               
51-425
               

               
Cow position:
               
chr1:63530775-63530394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 206
               

               
Conread position:
               
51-438
               

               
Cow position:
               
chr1:84905845-84906267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
77, 123
               

               
Conread position:
               
51-444
               

               
Cow position:
               
chr1:96304759-96305174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
90, 28
               

               
Conread position:
               
51-454
               

               
Cow position:
               
chr1:83982161-83982592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
83, 124
               

               
Conread position:
               
51-457
               

               
Cow position:
               
chr1:61737292-61736883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
74, 152
               

               
Conread position:
               
51-461
               

               
Cow position:
               
chr1:31765155-31765619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
51-462
               

               
Cow position:
               
chr1:78092255-78091813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
76, 261
               

               
Conread position:
               
51-463
               

               
Cow position:
               
chr1:3324090-3323634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
5, 287
               

               
Conread position:
               
51-463
               

               
Cow position:
               
chr1:11771868-11772305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
75, 141
               

               
Conread position:
               
51-463
               

               
Cow position:
               
chr1:52329306-52329753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
51-463
               

               
Cow position:
               
chr1:53540578-53540166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
146, 35
               

               
Conread position:
               
51-463
               

               
Cow position:
               
chr1:64189700-64189278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
15, 77
               

               
Conread position:
               
51-463
               

               
Cow position:
               
chr1:73584190-73584626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
76, 125
               

               
Conread position:
               
51-463
               

               
Cow position:
               
chr1:85029150-85028736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
142, 20
               

               
Conread position:
               
51-467
               

               
Cow position:
               
chr1:88910709-88911118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
143, 42
               

               
Conread position:
               
51-484
               

               
Cow position:
               
chr1:57155205-57155646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
76, 128
               

               
Conread position:
               
52-191
               

               
Cow position:
               
chr1:15103098-15102950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr1:44321383-44321638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
79, 148
               

               
Conread position:
               
52-371
               

               
Cow position:
               
chr1:42868735-42869063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
9, 44
               

               
Conread position:
               
52-457
               

               
Cow position:
               
chr1:20099561-20099145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
34, 67
               

               
Conread position:
               
52-460
               

               
Cow position:
               
chr1:45555581-45555139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 47
               

               
Conread position:
               
53-160
               

               
Cow position:
               
chr1:102611736-102611625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
53-189
               

               
Cow position:
               
chr1:64960233-64960365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
48, 78
               

               
Conread position:
               
53-191
               

               
Cow position:
               
chr1:50585663-50585809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
53-191
               

               
Cow position:
               
chr1:55685766-55685911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
80, 14
               

               
Conread position:
               
53-191
               

               
Cow position:
               
chr1:62469270-62469127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
86, 14
               

               
Conread position:
               
53-220
               

               
Cow position:
               
chr1:4512183-4512015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
86, 25
               

               
Conread position:
               
53-222
               

               
Cow position:
               
chr1:14567429-14567607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
82, 129
               

               
Conread position:
               
53-230
               

               
Cow position:
               
chr1:70483122-70483312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
53-273
               

               
Cow position:
               
chr1:2462584-2462349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
82, 42
               

               
Conread position:
               
53-334
               

               
Cow position:
               
chr1:90904545-90904845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
78, 13
               

               
Conread position:
               
53-345
               

               
Cow position:
               
chr1:86061763-86062088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
8, 244
               

               
Conread position:
               
53-355
               

               
Cow position:
               
chr1:42482413-42482092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
38, 232
               

               
Conread position:
               
53-384
               

               
Cow position:
               
chr1:78839000-78838656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
85, 78
               

               
Conread position:
               
53-400
               

               
Cow position:
               
chr1:16060795-16061178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
84, 348
               

               
Conread position:
               
53-463
               

               
Cow position:
               
chr1:874876-874419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 351
               

               
Conread position:
               
53-463
               

               
Cow position:
               
chr1:90422889-90423310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
74, 14
               

               
Conread position:
               
53-470
               

               
Cow position:
               
chr1:79164869-79165322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 168
               

               
Conread position:
               
53-577
               

               
Cow position:
               
chr1:68863231-68862705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 14
               

               
Conread position:
               
53-581
               

               
Cow position:
               
chr1:38277813-38278403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 119
               

               
Conread position:
               
54-455
               

               
Cow position:
               
chr1:26929780-26930191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
13, 152
               

               
Conread position:
               
54-463
               

               
Cow position:
               
chr1:55705037-55705478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 12
               

               
Conread position:
               
54-463
               

               
Cow position:
               
chr1:89509720-89510157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 13
               

               
Conread position:
               
54-483
               

               
Cow position:
               
chr1:52052520-52052949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 75
               

               
Conread position:
               
55-132
               

               
Cow position:
               
chr1:36875519-36875442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
78
               

               
Alignm identity:
               
71
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
55-160
               

               
Cow position:
               
chr1:70464668-70464567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
55-190
               

               
Cow position:
               
chr1:23101886-23101743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
55-191
               

               
Cow position:
               
chr1:37503672-37503804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
55-192
               

               
Cow position:
               
chr1:92578623-92578767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
55-222
               

               
Cow position:
               
chr1:20126006-20125822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
86, 133
               

               
Conread position:
               
55-222
               

               
Cow position:
               
chr1:32014402-32014226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
55-223
               

               
Cow position:
               
chr1:91796031-91796199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
134, 80
               

               
Conread position:
               
55-228
               

               
Cow position:
               
chr1:90820269-90820454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
79, 163
               

               
Conread position:
               
55-233
               

               
Cow position:
               
chr1:71664683-71664877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
83, 186
               

               
Conread position:
               
55-235
               

               
Cow position:
               
chr1:42353355-42353178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
134, 31
               

               
Conread position:
               
55-269
               

               
Cow position:
               
chr1:41027283-41027046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
55-269
               

               
Cow position:
               
chr1:83093072-83092846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
75, 17
               

               
Conread position:
               
55-274
               

               
Cow position:
               
chr1:97144260-97144495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
71, 220
               

               
Conread position:
               
55-282
               

               
Cow position:
               
chr1:82538138-82537895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
83, 218
               

               
Conread position:
               
55-303
               

               
Cow position:
               
chr1:62235245-62235508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
44, 54
               

               
Conread position:
               
55-306
               

               
Cow position:
               
chr1:78066332-78066602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
55-315
               

               
Cow position:
               
chr1:6394768-6394486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
76, 119
               

               
Conread position:
               
55-334
               

               
Cow position:
               
chr1:49824855-49825161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
75, 12
               

               
Conread position:
               
55-375
               

               
Cow position:
               
chr1:91023257-91023599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
81, 43
               

               
Conread position:
               
55-390
               

               
Cow position:
               
chr1:65318788-65318426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 116
               

               
Conread position:
               
55-411
               

               
Cow position:
               
chr1:484252-484637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
76, 237
               

               
Conread position:
               
55-427
               

               
Cow position:
               
chr1:54156523-54156929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 167
               

               
Conread position:
               
55-434
               

               
Cow position:
               
chr1:21955161-21955569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
66, 108
               

               
Conread position:
               
55-448
               

               
Cow position:
               
chr1:70094549-70094128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
72, 127
               

               
Conread position:
               
55-457
               

               
Cow position:
               
chr1:29626700-29627133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
70, 19
               

               
Conread position:
               
55-462
               

               
Cow position:
               
chr1:73960895-73960478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 11
               

               
Conread position:
               
55-463
               

               
Cow position:
               
chr1:15547676-15547244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 257
               

               
Conread position:
               
55-463
               

               
Cow position:
               
chr1:23968854-23969261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 92
               

               
Conread position:
               
55-463
               

               
Cow position:
               
chr1:24132852-24133280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 246
               

               
Conread position:
               
55-463
               

               
Cow position:
               
chr1:36880498-36880054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
72, 262
               

               
Conread position:
               
55-463
               

               
Cow position:
               
chr1:37321799-37322229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 83
               

               
Conread position:
               
55-463
               

               
Cow position:
               
chr1:74946928-74947341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
72, 36
               

               
Conread position:
               
55-463
               

               
Cow position:
               
chr1:78811249-78810811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
76, 264
               

               
Conread position:
               
55-463
               

               
Cow position:
               
chr1:99609578-99609141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 164
               

               
Conread position:
               
55-468
               

               
Cow position:
               
chr1:51446093-51445650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 47
               

               
Conread position:
               
55-470
               

               
Cow position:
               
chr1:54478527-54478093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 77
               

               
Conread position:
               
55-470
               

               
Cow position:
               
chr1:68826713-68827137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 42
               

               
Conread position:
               
55-471
               

               
Cow position:
               
chr1:19481889-19482305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
135, 47
               

               
Conread position:
               
55-472
               

               
Cow position:
               
chr1:54206608-54207048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
72, 164
               

               
Conread position:
               
55-477
               

               
Cow position:
               
chr1:69415518-69415956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
72, 128
               

               
Conread position:
               
56-166
               

               
Cow position:
               
chr1:95712946-95713055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
82, 67
               

               
Conread position:
               
56-173
               

               
Cow position:
               
chr1:37145496-37145384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
56-182
               

               
Cow position:
               
chr1:45680478-45680351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
56-190
               

               
Cow position:
               
chr1:98556908-98557051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
56-191
               

               
Cow position:
               
chr1:11770032-11770169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
56-191
               

               
Cow position:
               
chr1:30028022-30028165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
56-191
               

               
Cow position:
               
chr1:51626586-51626722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
56-192
               

               
Cow position:
               
chr1:84787470-84787336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
56-200
               

               
Cow position:
               
chr1:53474358-53474213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
56-211
               

               
Cow position:
               
chr1:41022626-41022460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
56-222
               

               
Cow position:
               
chr1:527873-528042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
136, 90
               

               
Conread position:
               
56-222
               

               
Cow position:
               
chr1:22231861-22231678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
76, 117
               

               
Conread position:
               
56-222
               

               
Cow position:
               
chr1:63461088-63460908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
56-222
               

               
Cow position:
               
chr1:82336881-82336708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
74, 113
               

               
Conread position:
               
56-222
               

               
Cow position:
               
chr1:95153084-95152901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
82, 124
               

               
Conread position:
               
56-222
               

               
Cow position:
               
chr1:100800559-100800739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
56-223
               

               
Cow position:
               
chr1:92075690-92075518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
73, 154
               

               
Conread position:
               
56-230
               

               
Cow position:
               
chr1:43499100-43499274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
136, 71
               

               
Conread position:
               
56-258
               

               
Cow position:
               
chr1:66752423-66752647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
82, 11
               

               
Conread position:
               
56-285
               

               
Cow position:
               
chr1:6854109-6854347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
72, 39
               

               
Conread position:
               
56-286
               

               
Cow position:
               
chr1:92590383-92590151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
136, 70
               

               
Conread position:
               
56-290
               

               
Cow position:
               
chr1:500386-500125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
56-296
               

               
Cow position:
               
chr1:95828925-95829172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
75, 36
               

               
Conread position:
               
56-299
               

               
Cow position:
               
chr1:30035434-30035157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
79, 131
               

               
Conread position:
               
56-304
               

               
Cow position:
               
chr1:48618037-48618301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
82, 216
               

               
Conread position:
               
56-306
               

               
Cow position:
               
chr1:46143254-46143526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
10, 239
               

               
Conread position:
               
56-309
               

               
Cow position:
               
chr1:54267728-54268000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
21, 177
               

               
Conread position:
               
56-355
               

               
Cow position:
               
chr1:60509274-60509568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
106, 79
               

               
Conread position:
               
56-356
               

               
Cow position:
               
chr1:56618446-56618763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
77, 309
               

               
Conread position:
               
56-356
               

               
Cow position:
               
chr1:78794026-78794337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 218
               

               
Conread position:
               
56-357
               

               
Cow position:
               
chr1:56225992-56225679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
67, 277
               

               
Conread position:
               
56-366
               

               
Cow position:
               
chr1:20104476-20104146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
71, 250
               

               
Conread position:
               
56-371
               

               
Cow position:
               
chr1:29481417-29481754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
71, 218
               

               
Conread position:
               
56-372
               

               
Cow position:
               
chr1:11172578-11172246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
69, 93
               

               
Conread position:
               
56-375
               

               
Cow position:
               
chr1:78079933-78079596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
79, 230
               

               
Conread position:
               
56-375
               

               
Cow position:
               
chr1:90595367-90595686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 139
               

               
Conread position:
               
56-390
               

               
Cow position:
               
chr1:22526083-22525730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 12
               

               
Conread position:
               
56-390
               

               
Cow position:
               
chr1:30047417-30047740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
137, 34
               

               
Conread position:
               
56-409
               

               
Cow position:
               
chr1:87095003-87095399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 16
               

               
Conread position:
               
56-418
               

               
Cow position:
               
chr1:20667540-20667921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 35
               

               
Conread position:
               
56-424
               

               
Cow position:
               
chr1:59519121-59518736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 100
               

               
Conread position:
               
56-430
               

               
Cow position:
               
chr1:25735078-25734662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
77, 45
               

               
Conread position:
               
56-439
               

               
Cow position:
               
chr1:28563351-28563769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 284
               

               
Conread position:
               
56-441
               

               
Cow position:
               
chr1:86279627-86279212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
71, 240
               

               
Conread position:
               
56-442
               

               
Cow position:
               
chr1:63139054-63138635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
80, 234
               

               
Conread position:
               
56-446
               

               
Cow position:
               
chr1:15050530-15050151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
129, 71
               

               
Conread position:
               
56-446
               

               
Cow position:
               
chr1:93110421-93110829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
10, 71
               

               
Conread position:
               
56-451
               

               
Cow position:
               
chr1:40388668-40389058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
82, 68
               

               
Conread position:
               
56-454
               

               
Cow position:
               
chr1:52496978-52496566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
82, 37
               

               
Conread position:
               
56-457
               

               
Cow position:
               
chr1:10633250-10632835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 46
               

               
Conread position:
               
56-460
               

               
Cow position:
               
chr1:19466246-19465841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 60
               

               
Conread position:
               
56-461
               

               
Cow position:
               
chr1:10941888-10942314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 121
               

               
Conread position:
               
56-461
               

               
Cow position:
               
chr1:10964498-10964072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 111
               

               
Conread position:
               
56-461
               

               
Cow position:
               
chr1:21787534-21787104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 50
               

               
Conread position:
               
56-461
               

               
Cow position:
               
chr1:34771289-34771726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 36
               

               
Conread position:
               
56-461
               

               
Cow position:
               
chr1:40600235-40599826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 46
               

               
Conread position:
               
56-461
               

               
Cow position:
               
chr1:82880841-82880443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 75
               

               
Conread position:
               
56-461
               

               
Cow position:
               
chr1:91065947-91066371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 229
               

               
Conread position:
               
56-462
               

               
Cow position:
               
chr1:7740153-7739747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 257
               

               
Conread position:
               
56-463
               

               
Cow position:
               
chr1:3429304-3429733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
122, 91
               

               
Conread position:
               
56-463
               

               
Cow position:
               
chr1:21954017-21954442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 111
               

               
Conread position:
               
56-463
               

               
Cow position:
               
chr1:25281467-25281900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 41
               

               
Conread position:
               
56-463
               

               
Cow position:
               
chr1:43839721-43839303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
83, 174
               

               
Conread position:
               
56-463
               

               
Cow position:
               
chr1:46939667-46940086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 79
               

               
Conread position:
               
56-463
               

               
Cow position:
               
chr1:48443980-48444407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 231
               

               
Conread position:
               
56-463
               

               
Cow position:
               
chr1:53370294-53369842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 39
               

               
Conread position:
               
56-463
               

               
Cow position:
               
chr1:72034718-72035153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 39
               

               
Conread position:
               
56-463
               

               
Cow position:
               
chr1:76222508-76222915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 91
               

               
Conread position:
               
56-463
               

               
Cow position:
               
chr1:77620759-77620326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 106
               

               
Conread position:
               
56-463
               

               
Cow position:
               
chr1:86113186-86113637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 120
               

               
Conread position:
               
56-463
               

               
Cow position:
               
chr1:87072904-87072480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 112
               

               
Conread position:
               
56-463
               

               
Cow position:
               
chr1:100552176-100551746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 81
               

               
Conread position:
               
56-465
               

               
Cow position:
               
chr1:101551658-101551231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
63, 21
               

               
Conread position:
               
56-467
               

               
Cow position:
               
chr1:8828-8394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 279
               

               
Conread position:
               
56-467
               

               
Cow position:
               
chr1:3923594-3924022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 222
               

               
Conread position:
               
56-471
               

               
Cow position:
               
chr1:18936627-18937065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 115
               

               
Conread position:
               
56-471
               

               
Cow position:
               
chr1:70435196-70434761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 82
               

               
Conread position:
               
56-471
               

               
Cow position:
               
chr1:94379195-94378801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
14, 75
               

               
Conread position:
               
56-484
               

               
Cow position:
               
chr1:81228126-81228584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 32
               

               
Conread position:
               
56-493
               

               
Cow position:
               
chr1:54199187-54199637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 22
               

               
Conread position:
               
56-529
               

               
Cow position:
               
chr1:33330891-33331389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
13, 293
               

               
Conread position:
               
56-570
               

               
Cow position:
               
chr1:84238910-84239446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 93
               

               
Conread position:
               
56-577
               

               
Cow position:
               
chr1:15334098-15333540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 424
               

               
Conread position:
               
56-577
               

               
Cow position:
               
chr1:34686376-34685833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 31
               

               
Conread position:
               
56-577
               

               
Cow position:
               
chr1:38419237-38418711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
15, 40
               

               
Conread position:
               
56-581
               

               
Cow position:
               
chr1:6304667-6305214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 121
               

               
Conread position:
               
57-167
               

               
Cow position:
               
chr1:81355194-81355303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
57-189
               

               
Cow position:
               
chr1:75227116-75227251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
57-191
               

               
Cow position:
               
chr1:2715227-2715089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
57-191
               

               
Cow position:
               
chr1:56749023-56748879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
57-191
               

               
Cow position:
               
chr1:70175332-70175471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
57-191
               

               
Cow position:
               
chr1:79663244-79663371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
57-191
               

               
Cow position:
               
chr1:95156756-95156897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
57-201
               

               
Cow position:
               
chr1:25956105-25955951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
57-211
               

               
Cow position:
               
chr1:98742225-98742063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
57-222
               

               
Cow position:
               
chr1:89297898-89298080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
32, 139
               

               
Conread position:
               
57-222
               

               
Cow position:
               
chr1:89301507-89301689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
32, 139
               

               
Conread position:
               
57-224
               

               
Cow position:
               
chr1:100993137-100992974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
63, 83
               

               
Conread position:
               
57-233
               

               
Cow position:
               
chr1:48301242-48301432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
72, 45
               

               
Conread position:
               
57-271
               

               
Cow position:
               
chr1:49980917-49980678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
76, 155
               

               
Conread position:
               
57-279
               

               
Cow position:
               
chr1:67919337-67919095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
65, 92
               

               
Conread position:
               
57-318
               

               
Cow position:
               
chr1:35671745-35671466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
76, 166
               

               
Conread position:
               
57-319
               

               
Cow position:
               
chr1:102754059-102753776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
135, 17
               

               
Conread position:
               
57-355
               

               
Cow position:
               
chr1:5636863-5637188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
134, 70
               

               
Conread position:
               
57-356
               

               
Cow position:
               
chr1:41137939-41138244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
78, 185
               

               
Conread position:
               
57-370
               

               
Cow position:
               
chr1:86056869-86057184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
80, 212
               

               
Conread position:
               
57-372
               

               
Cow position:
               
chr1:100817750-100817428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
82, 111
               

               
Conread position:
               
57-392
               

               
Cow position:
               
chr1:62519575-62519206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
81, 165
               

               
Conread position:
               
57-392
               

               
Cow position:
               
chr1:86682359-86682714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
72, 15
               

               
Conread position:
               
57-400
               

               
Cow position:
               
chr1:88913529-88913164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
76, 165
               

               
Conread position:
               
57-400
               

               
Cow position:
               
chr1:96472625-96472291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 68
               

               
Conread position:
               
57-409
               

               
Cow position:
               
chr1:41115527-41115882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
82, 48
               

               
Conread position:
               
57-432
               

               
Cow position:
               
chr1:43311563-43311967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
72, 23
               

               
Conread position:
               
57-439
               

               
Cow position:
               
chr1:5597003-5597399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
75, 165
               

               
Conread position:
               
57-442
               

               
Cow position:
               
chr1:46030155-46030556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
74, 112
               

               
Conread position:
               
57-457
               

               
Cow position:
               
chr1:49433052-49433483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 293
               

               
Conread position:
               
57-457
               

               
Cow position:
               
chr1:97954274-97954667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
132, 82
               

               
Conread position:
               
57-458
               

               
Cow position:
               
chr1:86110536-86110938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
78, 36
               

               
Conread position:
               
57-461
               

               
Cow position:
               
chr1:93499828-93499400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 113
               

               
Conread position:
               
57-462
               

               
Cow position:
               
chr1:78791118-78791529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
123, 69
               

               
Conread position:
               
57-462
               

               
Cow position:
               
chr1:97622030-97622421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
102, 69
               

               
Conread position:
               
57-463
               

               
Cow position:
               
chr1:22730942-22730537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 221
               

               
Conread position:
               
57-463
               

               
Cow position:
               
chr1:53623165-53622740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 120
               

               
Conread position:
               
57-463
               

               
Cow position:
               
chr1:57575555-57575992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 241
               

               
Conread position:
               
57-463
               

               
Cow position:
               
chr1:61005348-61005790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
22, 255
               

               
Conread position:
               
57-463
               

               
Cow position:
               
chr1:68855375-68854950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
82, 242
               

               
Conread position:
               
57-463
               

               
Cow position:
               
chr1:70829106-70828690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
9, 40
               

               
Conread position:
               
57-463
               

               
Cow position:
               
chr1:71747825-71748231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
135, 89
               

               
Conread position:
               
57-463
               

               
Cow position:
               
chr1:95177126-95176711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 15
               

               
Conread position:
               
57-463
               

               
Cow position:
               
chr1:97755709-97755300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
84, 11
               

               
Conread position:
               
57-471
               

               
Cow position:
               
chr1:2075141-2075559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
71, 112
               

               
Conread position:
               
57-472
               

               
Cow position:
               
chr1:61885121-61884683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
82, 229
               

               
Conread position:
               
57-480
               

               
Cow position:
               
chr1:43340424-43340863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 146
               

               
Conread position:
               
57-579
               

               
Cow position:
               
chr1:68618731-68619288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 36
               

               
Conread position:
               
57-581
               

               
Cow position:
               
chr1:14980929-14981451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 72
               

               
Conread position:
               
58-181
               

               
Cow position:
               
chr1:8778130-8778258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
58-181
               

               
Cow position:
               
chr1:80733204-80733079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
58-191
               

               
Cow position:
               
chr1:55753011-55753149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
58-191
               

               
Cow position:
               
chr1:70044552-70044420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
58-191
               

               
Cow position:
               
chr1:80423524-80423665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
58-222
               

               
Cow position:
               
chr1:32035506-32035680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
69, 34
               

               
Conread position:
               
58-222
               

               
Cow position:
               
chr1:81638745-81638578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
75, 10
               

               
Conread position:
               
58-304
               

               
Cow position:
               
chr1:101507558-101507296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
79, 57
               

               
Conread position:
               
58-306
               

               
Cow position:
               
chr1:33998957-33998693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
72, 89
               

               
Conread position:
               
58-307
               

               
Cow position:
               
chr1:96599096-96599345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
125, 35
               

               
Conread position:
               
58-308
               

               
Cow position:
               
chr1:3130340-3130595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
73, 48
               

               
Conread position:
               
58-320
               

               
Cow position:
               
chr1:52467493-52467224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
135, 34
               

               
Conread position:
               
58-352
               

               
Cow position:
               
chr1:30189365-30189038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
69, 321
               

               
Conread position:
               
58-358
               

               
Cow position:
               
chr1:43855497-43855187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 203
               

               
Conread position:
               
58-360
               

               
Cow position:
               
chr1:6826084-6826405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
71, 50
               

               
Conread position:
               
58-393
               

               
Cow position:
               
chr1:20950925-20950571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
81, 308
               

               
Conread position:
               
58-400
               

               
Cow position:
               
chr1:101280530-101280875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
77, 16
               

               
Conread position:
               
58-400
               

               
Cow position:
               
chr1:101632143-101632498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
7, 35
               

               
Conread position:
               
58-409
               

               
Cow position:
               
chr1:20544475-20544127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 73
               

               
Conread position:
               
58-418
               

               
Cow position:
               
chr1:95558248-95557859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
13, 24
               

               
Conread position:
               
58-423
               

               
Cow position:
               
chr1:68763476-68763866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 232
               

               
Conread position:
               
58-426
               

               
Cow position:
               
chr1:27114845-27114480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 37
               

               
Conread position:
               
58-438
               

               
Cow position:
               
chr1:71295096-71295514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
70, 34
               

               
Conread position:
               
58-444
               

               
Cow position:
               
chr1:4414021-4414413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 34
               

               
Conread position:
               
58-453
               

               
Cow position:
               
chr1:95017352-95017730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 57
               

               
Conread position:
               
58-454
               

               
Cow position:
               
chr1:74955824-74956239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 81
               

               
Conread position:
               
58-457
               

               
Cow position:
               
chr1:14379342-14379748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
85, 182
               

               
Conread position:
               
58-461
               

               
Cow position:
               
chr1:64302042-64302456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 44
               

               
Conread position:
               
58-462
               

               
Cow position:
               
chr1:6166440-6166029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 245
               

               
Conread position:
               
58-462
               

               
Cow position:
               
chr1:48105217-48105657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 255
               

               
Conread position:
               
58-462
               

               
Cow position:
               
chr1:100449984-100450409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
132, 34
               

               
Conread position:
               
58-463
               

               
Cow position:
               
chr1:13414230-13413802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 34
               

               
Conread position:
               
58-463
               

               
Cow position:
               
chr1:46218758-46218359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
79, 114
               

               
Conread position:
               
58-463
               

               
Cow position:
               
chr1:52414775-52415184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
163, 68
               

               
Conread position:
               
58-463
               

               
Cow position:
               
chr1:84811733-84812161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
75, 286
               

               
Conread position:
               
58-463
               

               
Cow position:
               
chr1:96712612-96713038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
136, 26
               

               
Conread position:
               
58-467
               

               
Cow position:
               
chr1:76096625-76096211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
21, 138
               

               
Conread position:
               
58-467
               

               
Cow position:
               
chr1:82378980-82378566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
135, 70
               

               
Conread position:
               
58-468
               

               
Cow position:
               
chr1:74083980-74084421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 377
               

               
Conread position:
               
58-469
               

               
Cow position:
               
chr1:57119158-57119573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
69, 144
               

               
Conread position:
               
58-470
               

               
Cow position:
               
chr1:39426809-39427213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 87
               

               
Conread position:
               
58-472
               

               
Cow position:
               
chr1:18283670-18283264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
162, 18
               

               
Conread position:
               
59-184
               

               
Cow position:
               
chr1:34952445-34952317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
82, 110
               

               
Conread position:
               
59-189
               

               
Cow position:
               
chr1:54294314-54294446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
62, 54
               

               
Conread position:
               
59-221
               

               
Cow position:
               
chr1:42775113-42774941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
59-222
               

               
Cow position:
               
chr1:15875866-15875690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
59-222
               

               
Cow position:
               
chr1:87149609-87149785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
59-230
               

               
Cow position:
               
chr1:22828366-22828548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
81, 180
               

               
Conread position:
               
59-272
               

               
Cow position:
               
chr1:102768382-102768147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
75, 33
               

               
Conread position:
               
59-332
               

               
Cow position:
               
chr1:96558639-96558924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
73, 182
               

               
Conread position:
               
59-367
               

               
Cow position:
               
chr1:47790461-47790787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
70, 222
               

               
Conread position:
               
59-393
               

               
Cow position:
               
chr1:96038591-96038942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
69, 213
               

               
Conread position:
               
59-394
               

               
Cow position:
               
chr1:23186595-23186948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
79, 280
               

               
Conread position:
               
59-397
               

               
Cow position:
               
chr1:22192977-22192607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
59-446
               

               
Cow position:
               
chr1:31846204-31845821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
82, 12
               

               
Conread position:
               
59-456
               

               
Cow position:
               
chr1:8287423-8287831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
76, 114
               

               
Conread position:
               
59-457
               

               
Cow position:
               
chr1:33720311-33719895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 198
               

               
Conread position:
               
59-457
               

               
Cow position:
               
chr1:42139046-42138648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
102, 170
               

               
Conread position:
               
59-461
               

               
Cow position:
               
chr1:100324547-100324948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 115
               

               
Conread position:
               
59-462
               

               
Cow position:
               
chr1:7657131-7657536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
69, 36
               

               
Conread position:
               
59-463
               

               
Cow position:
               
chr1:1185926-1185515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
52, 77
               

               
Conread position:
               
59-463
               

               
Cow position:
               
chr1:10655684-10655253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
68, 160
               

               
Conread position:
               
59-463
               

               
Cow position:
               
chr1:22729261-22728823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 25
               

               
Conread position:
               
59-463
               

               
Cow position:
               
chr1:34160035-34159607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 245
               

               
Conread position:
               
59-463
               

               
Cow position:
               
chr1:41056886-41056460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 21
               

               
Conread position:
               
59-463
               

               
Cow position:
               
chr1:43352446-43352875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 317
               

               
Conread position:
               
59-463
               

               
Cow position:
               
chr1:44507175-44506744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 410
               

               
Conread position:
               
59-463
               

               
Cow position:
               
chr1:63595844-63596284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
68, 259
               

               
Conread position:
               
59-463
               

               
Cow position:
               
chr1:92370161-92370585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
68, 113
               

               
Conread position:
               
59-463
               

               
Cow position:
               
chr1:96964526-96964096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 249
               

               
Conread position:
               
59-466
               

               
Cow position:
               
chr1:101835022-101834608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 8
               

               
Conread position:
               
59-468
               

               
Cow position:
               
chr1:26895605-26896054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 116
               

               
Conread position:
               
59-468
               

               
Cow position:
               
chr1:36998389-36997965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 205
               

               
Conread position:
               
59-469
               

               
Cow position:
               
chr1:6759838-6760248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
132, 12
               

               
Conread position:
               
59-470
               

               
Cow position:
               
chr1:63504521-63504107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
128, 61
               

               
Conread position:
               
59-471
               

               
Cow position:
               
chr1:21130921-21131317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
134, 76
               

               
Conread position:
               
59-471
               

               
Cow position:
               
chr1:31934711-31934282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 106
               

               
Conread position:
               
59-478
               

               
Cow position:
               
chr1:196799-197249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
82, 104
               

               
Conread position:
               
59-577
               

               
Cow position:
               
chr1:29935184-29935712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 46
               

               
Conread position:
               
59-577
               

               
Cow position:
               
chr1:52435482-52434916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 232
               

               
Conread position:
               
59-581
               

               
Cow position:
               
chr1:86579180-86578620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 335
               

               
Conread position:
               
60-165
               

               
Cow position:
               
chr1:51292348-51292238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
60-191
               

               
Cow position:
               
chr1:62181933-62182063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
60-191
               

               
Cow position:
               
chr1:89835916-89835784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
60-195
               

               
Cow position:
               
chr1:45233189-45233054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
79, 92
               

               
Conread position:
               
60-250
               

               
Cow position:
               
chr1:99604986-99605183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
77, 32
               

               
Conread position:
               
60-377
               

               
Cow position:
               
chr1:64572720-64572380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 230
               

               
Conread position:
               
60-397
               

               
Cow position:
               
chr1:541981-541651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
142, 65
               

               
Conread position:
               
60-397
               

               
Cow position:
               
chr1:42545594-42545940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 33
               

               
Conread position:
               
60-409
               

               
Cow position:
               
chr1:73545702-73546071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
67, 114
               

               
Conread position:
               
60-428
               

               
Cow position:
               
chr1:49317295-49317683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 217
               

               
Conread position:
               
60-437
               

               
Cow position:
               
chr1:95101157-95100763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
81, 229
               

               
Conread position:
               
60-438
               

               
Cow position:
               
chr1:99570292-99570664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
82, 19
               

               
Conread position:
               
60-457
               

               
Cow position:
               
chr1:68817595-68818016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 26
               

               
Conread position:
               
60-462
               

               
Cow position:
               
chr1:4691794-4691369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
70, 216
               

               
Conread position:
               
60-462
               

               
Cow position:
               
chr1:20000550-20000972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 106
               

               
Conread position:
               
60-462
               

               
Cow position:
               
chr1:66138528-66138093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
72, 231
               

               
Conread position:
               
60-463
               

               
Cow position:
               
chr1:1878229-1877803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 226
               

               
Conread position:
               
60-463
               

               
Cow position:
               
chr1:11021202-11020811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
133, 14
               

               
Conread position:
               
60-463
               

               
Cow position:
               
chr1:31347727-31348134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 187
               

               
Conread position:
               
60-463
               

               
Cow position:
               
chr1:42887074-42887487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 174
               

               
Conread position:
               
60-463
               

               
Cow position:
               
chr1:47658554-47658129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
70, 120
               

               
Conread position:
               
60-463
               

               
Cow position:
               
chr1:50930774-50931193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 217
               

               
Conread position:
               
60-463
               

               
Cow position:
               
chr1:51394624-51394195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 159
               

               
Conread position:
               
60-463
               

               
Cow position:
               
chr1:53374633-53374211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 35
               

               
Conread position:
               
60-463
               

               
Cow position:
               
chr1:55230179-55229760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 175
               

               
Conread position:
               
60-463
               

               
Cow position:
               
chr1:64803891-64804332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 261
               

               
Conread position:
               
60-463
               

               
Cow position:
               
chr1:72011616-72012028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 84
               

               
Conread position:
               
60-463
               

               
Cow position:
               
chr1:81290710-81290294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
57, 160
               

               
Conread position:
               
60-472
               

               
Cow position:
               
chr1:96365855-96365442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 35
               

               
Conread position:
               
61-196
               

               
Cow position:
               
chr1:30949187-30949053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
74, 32
               

               
Conread position:
               
61-463
               

               
Cow position:
               
chr1:102785151-102784736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 85
               

               
Conread position:
               
62-189
               

               
Cow position:
               
chr1:40724796-40724665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
62-432
               

               
Cow position:
               
chr1:58754594-58754978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
77, 53
               

               
Conread position:
               
62-463
               

               
Cow position:
               
chr1:73521989-73522368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
313, 58
               

               
Conread position:
               
63-191
               

               
Cow position:
               
chr1:92363467-92363596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
75, 108
               

               
Conread position:
               
63-230
               

               
Cow position:
               
chr1:63079204-63079032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
66, 30
               

               
Conread position:
               
63-354
               

               
Cow position:
               
chr1:26427677-26427972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
129, 64
               

               
Conread position:
               
63-391
               

               
Cow position:
               
chr1:89449101-89448750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
65, 55
               

               
Conread position:
               
63-397
               

               
Cow position:
               
chr1:96081682-96081328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
9, 35
               

               
Conread position:
               
63-439
               

               
Cow position:
               
chr1:66430477-66430096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 41
               

               
Conread position:
               
63-463
               

               
Cow position:
               
chr1:71045938-71045530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 72
               

               
Conread position:
               
63-463
               

               
Cow position:
               
chr1:82337577-82338008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 309
               

               
Conread position:
               
63-483
               

               
Cow position:
               
chr1:92010500-92010069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
28, 64
               

               
Conread position:
               
63-577
               

               
Cow position:
               
chr1:73761187-73761676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 69
               

               
Conread position:
               
64-260
               

               
Cow position:
               
chr1:69940623-69940842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
68, 15
               

               
Conread position:
               
64-368
               

               
Cow position:
               
chr1:72813820-72813488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
10, 45
               

               
Conread position:
               
64-408
               

               
Cow position:
               
chr1:24581769-24581416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
10, 32
               

               
Conread position:
               
64-436
               

               
Cow position:
               
chr1:72104056-72103649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
64-457
               

               
Cow position:
               
chr1:31348236-31348659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 26
               

               
Conread position:
               
64-462
               

               
Cow position:
               
chr1:34856422-34856852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 381
               

               
Conread position:
               
64-462
               

               
Cow position:
               
chr1:93528896-93528467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 14
               

               
Conread position:
               
64-463
               

               
Cow position:
               
chr1:6941670-6941241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 314
               

               
Conread position:
               
64-463
               

               
Cow position:
               
chr1:6959083-6958654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 314
               

               
Conread position:
               
64-463
               

               
Cow position:
               
chr1:70297489-70297047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
10, 209
               

               
Conread position:
               
65-332
               

               
Cow position:
               
chr1:79135480-79135190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
70, 95
               

               
Conread position:
               
65-455
               

               
Cow position:
               
chr1:100741483-100741076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 302
               

               
Conread position:
               
65-469
               

               
Cow position:
               
chr1:27145443-27145884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
53, 230
               

               
Conread position:
               
66-170
               

               
Cow position:
               
chr1:68857683-68857576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
62, 77
               

               
Conread position:
               
66-197
               

               
Cow position:
               
chr1:58785147-58785015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
72, 6
               

               
Conread position:
               
66-272
               

               
Cow position:
               
chr1:96362238-96362443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
126, 26
               

               
Conread position:
               
66-463
               

               
Cow position:
               
chr1:95764912-95765313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
130, 62
               

               
Conread position:
               
67-191
               

               
Cow position:
               
chr1:7966046-7965913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
67-191
               

               
Cow position:
               
chr1:43378036-43377918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
67-191
               

               
Cow position:
               
chr1:51968726-51968604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
72, 25
               

               
Conread position:
               
67-191
               

               
Cow position:
               
chr1:81858702-81858833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
67-191
               

               
Cow position:
               
chr1:89388542-89388411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
67-191
               

               
Cow position:
               
chr1:97833896-97833774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
67-200
               

               
Cow position:
               
chr1:11708825-11708961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
61, 98
               

               
Conread position:
               
67-209
               

               
Cow position:
               
chr1:50906482-50906632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
67-210
               

               
Cow position:
               
chr1:85339576-85339426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
67-211
               

               
Cow position:
               
chr1:5849444-5849304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
122, 58
               

               
Conread position:
               
67-219
               

               
Cow position:
               
chr1:51860365-51860528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
67-222
               

               
Cow position:
               
chr1:63994356-63994525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
61, 113
               

               
Conread position:
               
67-240
               

               
Cow position:
               
chr1:71636129-71636311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
53, 99
               

               
Conread position:
               
67-263
               

               
Cow position:
               
chr1:6731378-6731158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
71, 198
               

               
Conread position:
               
67-289
               

               
Cow position:
               
chr1:60045186-60044939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
74, 104
               

               
Conread position:
               
67-291
               

               
Cow position:
               
chr1:84110-83886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
125, 78
               

               
Conread position:
               
67-301
               

               
Cow position:
               
chr1:77739923-77739657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
62, 103
               

               
Conread position:
               
67-301
               

               
Cow position:
               
chr1:79719007-79718742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
71, 109
               

               
Conread position:
               
67-303
               

               
Cow position:
               
chr1:22035807-22035548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
71, 205
               

               
Conread position:
               
67-305
               

               
Cow position:
               
chr1:48206341-48206598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
71, 25
               

               
Conread position:
               
67-320
               

               
Cow position:
               
chr1:98583947-98583680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
71, 167
               

               
Conread position:
               
67-333
               

               
Cow position:
               
chr1:100575842-100576130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
67-337
               

               
Cow position:
               
chr1:102305948-102306238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
67-340
               

               
Cow position:
               
chr1:82513153-82513453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
67-405
               

               
Cow position:
               
chr1:42175927-42175560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
70, 308
               

               
Conread position:
               
67-409
               

               
Cow position:
               
chr1:33206675-33207039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 204
               

               
Conread position:
               
67-428
               

               
Cow position:
               
chr1:71228294-71227887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
67-430
               

               
Cow position:
               
chr1:724938-724543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
67, 34
               

               
Conread position:
               
67-434
               

               
Cow position:
               
chr1:65025460-65025061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
48, 100
               

               
Conread position:
               
67-438
               

               
Cow position:
               
chr1:24542371-24542781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
65, 198
               

               
Conread position:
               
67-445
               

               
Cow position:
               
chr1:23488304-23488719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
55, 155
               

               
Conread position:
               
67-446
               

               
Cow position:
               
chr1:75383162-75382784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 126
               

               
Conread position:
               
67-457
               

               
Cow position:
               
chr1:38754116-38753703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 376
               

               
Conread position:
               
67-457
               

               
Cow position:
               
chr1:49130951-49131340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
92, 59
               

               
Conread position:
               
67-462
               

               
Cow position:
               
chr1:7443181-7442762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
69, 224
               

               
Conread position:
               
67-462
               

               
Cow position:
               
chr1:69539884-69539475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 165
               

               
Conread position:
               
67-462
               

               
Cow position:
               
chr1:70422501-70422077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
60, 24
               

               
Conread position:
               
67-463
               

               
Cow position:
               
chr1:16766887-16767309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 225
               

               
Conread position:
               
67-463
               

               
Cow position:
               
chr1:26201433-26200996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
61, 17
               

               
Conread position:
               
67-463
               

               
Cow position:
               
chr1:68217167-68217583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
61, 28
               

               
Conread position:
               
67-463
               

               
Cow position:
               
chr1:69678124-69678550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
28, 151
               

               
Conread position:
               
67-463
               

               
Cow position:
               
chr1:82936406-82936806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
72, 19
               

               
Conread position:
               
67-463
               

               
Cow position:
               
chr1:100422019-100421619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 35
               

               
Conread position:
               
67-467
               

               
Cow position:
               
chr1:41182035-41181616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 92
               

               
Conread position:
               
67-468
               

               
Cow position:
               
chr1:63434599-63435035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 230
               

               
Conread position:
               
67-469
               

               
Cow position:
               
chr1:11853487-11853921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
65, 35
               

               
Conread position:
               
67-470
               

               
Cow position:
               
chr1:42555442-42555038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 31
               

               
Conread position:
               
67-471
               

               
Cow position:
               
chr1:61741765-61742199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
72, 35
               

               
Conread position:
               
67-490
               

               
Cow position:
               
chr1:81568830-81569285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 255
               

               
Conread position:
               
67-577
               

               
Cow position:
               
chr1:21578009-21577452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
30, 219
               

               
Conread position:
               
67-577
               

               
Cow position:
               
chr1:89548367-89547863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
58, 73
               

               
Conread position:
               
67-581
               

               
Cow position:
               
chr1:64678879-64678338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
46, 74
               

               
Conread position:
               
68-463
               

               
Cow position:
               
chr1:1980912-1981334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
66, 24
               

               
Conread position:
               
68-463
               

               
Cow position:
               
chr1:62964466-62964055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
71, 171
               

               
Conread position:
               
69-191
               

               
Cow position:
               
chr1:10470619-10470493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
69-211
               

               
Cow position:
               
chr1:77810566-77810718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
62, 21
               

               
Conread position:
               
69-264
               

               
Cow position:
               
chr1:95618838-95618619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
64, 212
               

               
Conread position:
               
69-344
               

               
Cow position:
               
chr1:75250309-75250011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
63, 37
               

               
Conread position:
               
69-347
               

               
Cow position:
               
chr1:38055308-38055579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
5, 27
               

               
Conread position:
               
69-356
               

               
Cow position:
               
chr1:81582292-81582009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
123, 53
               

               
Conread position:
               
69-366
               

               
Cow position:
               
chr1:101788900-101789194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
60, 161
               
UCSC Genome Browser

               
Conread position:
               
69-463
               

               
Cow position:
               
chr1:55357092-55357510 (view  custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 210
               
UCSC Genome Browser

               
               
               
Conread position:
69-463

               
               
               
Cow position:
chr1:70533760-70534158 (view  custom track)

               
               
               
Alignm length:
413

               
               
               
Alignm identity:
271

               
               
               
Alignm E-value:
4e-28

               
               
               
Alignm gaps (pig, cow):
59, 142
UCSC Genome Browser

               
               
               
Conread position:
69-468

               
               
               
Cow position:
chr1:70379969-70380375 (view  custom track)

               
               
               
Alignm length:
416

               
               
               
Alignm identity:
276

               
               
               
Alignm E-value:
7e-34

               
               
               
Alignm gaps (pig, cow):
78, 44

               
               
               Conread position:69-472
               
               
               Cow position:chr1:8869498-8869896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:272
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):109, 62

               
               
               Conread position:69-529
               
               
               Cow position:chr1:12464468-12464972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 234

               
               
               Conread position:69-581
               
               
               Cow position:chr1:3607992-3607496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 67

               
               
               Conread position:70-191
               
               
               Cow position:chr1:40303744-40303618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:70-191
               
               
               Cow position:chr1:67743542-67743669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:70-222
               
               
               Cow position:chr1:23373057-23372889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:70-280
               
               
               Cow position:chr1:70416564-70416785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):68, 193

               
               
               Conread position:70-320
               
               
               Cow position:chr1:98467998-98467730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):38, 215

               
               
               Conread position:70-397
               
               
               Cow position:chr1:33409427-33409784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):57, 100

               
               
               Conread position:70-430
               
               
               Cow position:chr1:31807054-31806682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:266
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):67, 27

               
               
               Conread position:70-572
               
               
               Cow position:chr1:16855505-16856035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 60

               
               
               Conread position:70-573
               
               
               Cow position:chr1:68845310-68845818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 103

               
               
               Conread position:70-581
               
               
               Cow position:chr1:7971600-7971079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 50

               
               
               Conread position:71-229
               
               
               Cow position:chr1:61011370-61011204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:71-280
               
               
               Cow position:chr1:17056185-17055957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):68, 95

               
               
               Conread position:71-338
               
               
               Cow position:chr1:24406719-24406989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):121, 52

               
               
               Conread position:71-401
               
               
               Cow position:chr1:53369392-53369053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):64, 21

               
               
               Conread position:71-463
               
               
               Cow position:chr1:731775-732149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:276
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):112, 21

               
               
               Conread position:71-463
               
               
               Cow position:chr1:21934007-21934396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):55, 68

               
               
               Conread position:72-221
               
               
               Cow position:chr1:25021884-25022044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:72-222
               
               
               Cow position:chr1:76518619-76518452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:72-345
               
               
               Cow position:chr1:71350530-71350825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:208
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):66, 261

               
               
               Conread position:72-371
               
               
               Cow position:chr1:86340264-86340599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):58, 297

               
               
               Conread position:72-380
               
               
               Cow position:chr1:47886286-47886626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:250
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):63, 105

               
               
               Conread position:72-400
               
               
               Cow position:chr1:76612938-76613289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:257
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):66, 219

               
               
               Conread position:72-409
               
               
               Cow position:chr1:101267808-101268172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):61, 13

               
               
               Conread position:72-446
               
               
               Cow position:chr1:49082940-49082515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:287
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:72-462
               
               
               Cow position:chr1:84283265-84282838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:291
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):57, 21

               
               
               Conread position:72-462
               
               
               Cow position:chr1:97820878-97820462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:279
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):19, 102

               
               
               Conread position:72-463
               
               
               Cow position:chr1:19144741-19145143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 94

               
               
               Conread position:72-463
               
               
               Cow position:chr1:23633733-23634125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 100

               
               
               Conread position:72-463
               
               
               Cow position:chr1:54258763-54258343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 268

               
               
               Conread position:72-463
               
               
               Cow position:chr1:63390570-63390998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:296
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:72-472
               
               
               Cow position:chr1:101634893-101634469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:295
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):121, 70

               
               
               Conread position:72-577
               
               
               Cow position:chr1:71136325-71135798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 26

               
               
               Conread position:72-577
               
               
               Cow position:chr1:97090511-97089979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:356
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):64, 14

               
               
               Conread position:73-191
               
               
               Cow position:chr1:39703145-39703031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:73-191
               
               
               Cow position:chr1:78793810-78793935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:73-243
               
               
               Cow position:chr1:63905071-63905252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:73-269
               
               
               Cow position:chr1:99629355-99629149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):56, 87

               
               
               Conread position:73-312
               
               
               Cow position:chr1:45223769-45223510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):60, 204

               
               
               Conread position:73-331
               
               
               Cow position:chr1:19991965-19992217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):35, 24

               
               
               Conread position:73-347
               
               
               Cow position:chr1:362948-362683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):145, 13

               
               
               Conread position:73-457
               
               
               Cow position:chr1:77720067-77720450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 65

               
               
               Conread position:73-462
               
               
               Cow position:chr1:78810073-78809660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 22

               
               
               Conread position:73-463
               
               
               Cow position:chr1:11913688-11914102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:290
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):45, 95

               
               
               Conread position:73-463
               
               
               Cow position:chr1:102349566-102349982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 40

               
               
               Conread position:73-463
               
               
               Cow position:chr1:102756242-102756644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:273
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):68, 52

               
               
               Conread position:73-579
               
               
               Cow position:chr1:11729365-11728824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 51

               
               
               Conread position:74-461
               
               
               Cow position:chr1:71078770-71079179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:287
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):61, 82

               
               
               Conread position:74-461
               
               
               Cow position:chr1:89381466-89381056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:284
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):64, 297

               
               
               Conread position:74-463
               
               
               Cow position:chr1:24597846-24597428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:295
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):5, 113

               
               
               Conread position:74-472
               
               
               Cow position:chr1:88926184-88926614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:291
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):16, 103

               
               
               Conread position:75-186
               
               
               Cow position:chr1:426195-426305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:75-271
               
               
               Cow position:chr1:52369990-52370194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):117, 62

               
               
               Conread position:75-318
               
               
               Cow position:chr1:53402975-53402706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:75-386
               
               
               Cow position:chr1:6228390-6228730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):32, 105

               
               
               Conread position:75-386
               
               
               Cow position:chr1:17196434-17196771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):62, 234

               
               
               Conread position:75-463
               
               
               Cow position:chr1:94212413-94212009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:283
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):40, 89

               
               
               Conread position:75-463
               
               
               Cow position:chr1:95499305-95499720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:284
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):56, 274

               
               
               Conread position:75-486
               
               
               Cow position:chr1:43388863-43389295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 49

               
               
               Conread position:76-340
               
               
               Cow position:chr1:55819224-55818964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):61, 21

               
               
               Conread position:76-460
               
               
               Cow position:chr1:98031105-98030693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:300
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):62, 16

               
               
               Conread position:77-266
               
               
               Cow position:chr1:31256041-31256247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):30, 196

               
               
               Conread position:77-374
               
               
               Cow position:chr1:2975800-2976125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):59, 217

               
               
               Conread position:78-191
               
               
               Cow position:chr1:89157942-89158058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:80-460
               
               
               Cow position:chr1:92963563-92963177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 55

               
               
               Conread position:80-463
               
               
               Cow position:chr1:42968131-42968542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):47, 9

               
               
               Conread position:80-463
               
               
               Cow position:chr1:91816582-91816998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:290
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):47, 229

               
               
               Conread position:80-471
               
               
               Cow position:chr1:1053768-1053357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:279
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):56, 207

               
               
               Conread position:81-463
               
               
               Cow position:chr1:71692008-71691590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:277
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):46, 193

               
               
               Conread position:81-471
               
               
               Cow position:chr1:99642184-99642601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 204

               
               
               Conread position:83-227
               
               
               Cow position:chr1:81471534-81471380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:84-462
               
               
               Cow position:chr1:61735266-61735662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:275
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):108, 53

               
               
               Conread position:84-463
               
               
               Cow position:chr1:51628326-51628726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:276
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):43, 183

               
               
               Conread position:84-474
               
               
               Cow position:chr1:53398155-53397752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:279
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):47, 151

               
               
               Conread position:85-461
               
               
               Cow position:chr1:89937197-89937583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):108, 63

               
               
               Conread position:86-361
               
               
               Cow position:chr1:65028701-65028412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):106, 37

               
               
               Conread position:86-406
               
               
               Cow position:chr1:19569035-19568687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):41, 205

               
               
               Conread position:88-581
               
               
               Cow position:chr1:13637487-13638033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 210

               
               
               Conread position:89-463
               
               
               Cow position:chr1:95057221-95056831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 194

               
               
               Conread position:93-463
               
               
               Cow position:chr1:31413823-31414183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:262
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):169, 38

               
               
               Conread position:93-463
               
               
               Cow position:chr1:57637535-57637148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):7, 206

               
               
               Conread position:95-461
               
               
               Cow position:chr1:76019527-76019904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 8

               
               
               Conread position:97-457
               
               
               Cow position:chr1:48581299-48580913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:274
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):41, 73

               
               
               Conread position:99-406
               
               
               Cow position:chr1:91811949-91811621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:249
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):57, 39

               
               
               Conread position:99-463
               
               
               Cow position:chr1:24534094-24534467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 183

               
               
               Conread position:100-210
               
               
               Cow position:chr1:31628004-31627891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):82, 37

               
               
               Conread position:100-436
               
               
               Cow position:chr1:90975931-90976280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 13

               
               
               Conread position:100-461
               
               
               Cow position:chr1:6078045-6077672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:249
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):92, 24

               
               
               Conread position:100-463
               
               
               Cow position:chr1:22827312-22826945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):93, 35

               
               
               Conread position:101-461
               
               
               Cow position:chr1:52487813-52488183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:265
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):34, 80

               
               
               Conread position:101-470
               
               
               Cow position:chr1:4291319-4290927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 12

               
               
               Conread position:103-340
               
               
               Cow position:chr1:6972679-6972432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):88, 26

               
               
               Conread position:103-461
               
               
               Cow position:chr1:56229393-56229032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:262
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):57, 34

               
               
               Conread position:105-463
               
               
               Cow position:chr1:52039794-52039412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 229

               
               
               Conread position:107-472
               
               
               Cow position:chr1:102647147-102647501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 30

               
               
               Conread position:109-376
               
               
               Cow position:chr1:86073750-86073462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):31, 179

               
               
               Conread position:111-433
               
               
               Cow position:chr1:32001167-32001515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 168

               
               
               Conread position:113-470
               
               
               Cow position:chr1:72285924-72286281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:250
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):79, 25

               
               
               Conread position:113-471
               
               
               Cow position:chr1:53495605-53495231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:262
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):66, 25

               
               
               Conread position:114-453
               
               
               Cow position:chr1:19885525-19885170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:263
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):25, 10

               
               
               Conread position:115-355
               
               
               Cow position:chr1:3352556-3352806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):24, 159

               
               
               Conread position:118-463
               
               
               Cow position:chr1:93810568-93810217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:264
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):21, 11

               
               
               Conread position:118-467
               
               
               Cow position:chr1:83582797-83583166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:256
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):74, 10

               
               
               Conread position:118-467
               
               
               Cow position:chr1:93044162-93043797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):13, 164

               
               
               Conread position:121-581
               
               
               Cow position:chr1:54732354-54732814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 17

               
               
               Conread position:123-439
               
               
               Cow position:chr1:94261669-94261347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:243
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):66, 14

               
               
               Conread position:123-457
               
               
               Cow position:chr1:79844603-79844250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):22, 242

               
               
               Conread position:124-427
               
               
               Cow position:chr1:93554971-93554663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):15, 200

               
               
               Conread position:125-401
               
               
               Cow position:chr1:97696878-97696580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:220
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:126-392
               
               
               Cow position:chr1:5580186-5579908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):65, 11

               
               
               Conread position:126-428
               
               
               Cow position:chr1:39509927-39510240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):66, 11

               
               
               Conread position:126-463
               
               
               Cow position:chr1:39068823-39069175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 154

               
               
               Conread position:126-463
               
               
               Cow position:chr1:68253726-68253367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:250
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):45, 11

               
               
               Conread position:126-463
               
               
               Cow position:chr1:74822582-74822227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:247
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):62, 11

               
               
               Conread position:126-470
               
               
               Cow position:chr1:101822384-101822729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:256
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):67, 11

               
               
               Conread position:127-237
               
               
               Cow position:chr1:76080937-76080823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:95
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):12, 105

               
               
               Conread position:127-315
               
               
               Cow position:chr1:5674573-5674393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:127-319
               
               
               Cow position:chr1:68672470-68672676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:127-319
               
               
               Cow position:chr1:98576179-98575969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):12, 144

               
               
               Conread position:127-327
               
               
               Cow position:chr1:8347255-8347039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):12, 154

               
               
               Conread position:127-337
               
               
               Cow position:chr1:95153354-95153125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):12, 153

               
               
               Conread position:127-355
               
               
               Cow position:chr1:81580307-81580063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):65, 10

               
               
               Conread position:127-356
               
               
               Cow position:chr1:45553111-45553356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):12, 238

               
               
               Conread position:127-399
               
               
               Cow position:chr1:65909640-65909368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 10

               
               
               Conread position:127-401
               
               
               Cow position:chr1:97939089-97938809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):13, 148

               
               
               Conread position:127-409
               
               
               Cow position:chr1:91874787-91875075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):64, 10

               
               
               Conread position:127-421
               
               
               Cow position:chr1:24777865-24778161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):63, 8

               
               
               Conread position:127-436
               
               
               Cow position:chr1:43872190-43872532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:256
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):66, 9

               
               
               Conread position:127-458
               
               
               Cow position:chr1:53671618-53671969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):12, 107

               
               
               Conread position:127-459
               
               
               Cow position:chr1:84255899-84255534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:259
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:127-459
               
               
               Cow position:chr1:98461416-98461070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:256
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):63, 20

               
               
               Conread position:127-460
               
               
               Cow position:chr1:80422402-80422081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):65, 11

               
               
               Conread position:127-460
               
               
               Cow position:chr1:98360274-98360630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:258
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):66, 12

               
               
               Conread position:127-462
               
               
               Cow position:chr1:3138043-3137710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 10

               
               
               Conread position:127-462
               
               
               Cow position:chr1:48730701-48731051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 153

               
               
               Conread position:127-463
               
               
               Cow position:chr1:21836061-21835724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:241
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):65, 19

               
               
               Conread position:127-463
               
               
               Cow position:chr1:33996794-33997136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:231
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):66, 10

               
               
               Conread position:127-463
               
               
               Cow position:chr1:36875158-36874791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:270
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):12, 241

               
               
               Conread position:127-463
               
               
               Cow position:chr1:36932285-36931935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 147

               
               
               Conread position:127-463
               
               
               Cow position:chr1:47233346-47233699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:253
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):12, 157

               
               
               Conread position:127-463
               
               
               Cow position:chr1:53308262-53308617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 52

               
               
               Conread position:127-463
               
               
               Cow position:chr1:77880601-77880940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:259
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):15, 182

               
               
               Conread position:127-463
               
               
               Cow position:chr1:81913023-81913376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:260
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):12, 212

               
               
               Conread position:127-463
               
               
               Cow position:chr1:90868317-90868660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 11

               
               
               Conread position:127-463
               
               
               Cow position:chr1:98551851-98551489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):12, 38

               
               
               Conread position:127-470
               
               
               Cow position:chr1:69264938-69264590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 10

               
               
               Conread position:127-471
               
               
               Cow position:chr1:53458825-53458474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:244
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):65, 18

               
               
               Conread position:127-528
               
               
               Cow position:chr1:49839616-49839204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 110

               
               
               Conread position:128-314
               
               
               Cow position:chr1:186150-186348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):11, 64

               
               
               Conread position:128-365
               
               
               Cow position:chr1:78697643-78697893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):65, 9

               
               
               Conread position:128-371
               
               
               Cow position:chr1:100569287-100569024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):11, 147

               
               
               Conread position:128-461
               
               
               Cow position:chr1:4027994-4027639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:254
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):11, 190

               
               
               Conread position:128-463
               
               
               Cow position:chr1:71253427-71253779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):64, 9

               
               
               Conread position:128-463
               
               
               Cow position:chr1:94226424-94226772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 85

               
               
               Conread position:128-463
               
               
               Cow position:chr1:100800480-100800132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:250
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):65, 9

               
               
               Conread position:128-476
               
               
               Cow position:chr1:21461000-21460631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):62, 23

               
               
               Conread position:129-376
               
               
               Cow position:chr1:76436608-76436359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):63, 8

               
               
               Conread position:129-409
               
               
               Cow position:chr1:84910518-84910795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):10, 104

               
               
               Conread position:129-460
               
               
               Cow position:chr1:52956379-52956038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 18

               
               
               Conread position:130-401
               
               
               Cow position:chr1:85647651-85647942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):19, 46

               
               
               Conread position:130-463
               
               
               Cow position:chr1:1991310-1991649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 58

               
               
               Conread position:130-463
               
               
               Cow position:chr1:52995155-52994799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 214

               
               
               Conread position:132-376
               
               
               Cow position:chr1:85549952-85550210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):60, 148

               
               
               Conread position:132-461
               
               
               Cow position:chr1:5135582-5135914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:234
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):6, 97

               
               
               Conread position:132-486
               
               
               Cow position:chr1:49796118-49795758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:263
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):60, 145

               
               
               Conread position:133-401
               
               
               Cow position:chr1:77683477-77683197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):60, 225

               
               
               Conread position:133-463
               
               
               Cow position:chr1:67821095-67821434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:242
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):6, 110

               
               
               Conread position:133-490
               
               
               Cow position:chr1:98594691-98594319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 147

               
               
               Conread position:135-423
               
               
               Cow position:chr1:75933389-75933088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 222

               
               
               Conread position:136-392
               
               
               Cow position:chr1:68245198-68245459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):55, 93

               
               
               Conread position:136-461
               
               
               Cow position:chr1:44125516-44125862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:242
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):58, 236

               
               
               Conread position:137-355
               
               
               Cow position:chr1:30417927-30418150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):54, 136

               
               
               Conread position:137-406
               
               
               Cow position:chr1:31607768-31608059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):20, 40

               
               
               Conread position:137-408
               
               
               Cow position:chr1:74928005-74927713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):57, 78

               
               
               Conread position:137-409
               
               
               Cow position:chr1:24876383-24876101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):57, 129

               
               
               Conread position:137-463
               
               
               Cow position:chr1:1165707-1165377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):39, 64

               
               
               Conread position:137-463
               
               
               Cow position:chr1:3789949-3790280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):54, 20

               
               
               Conread position:137-463
               
               
               Cow position:chr1:8349203-8349535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 135

               
               
               Conread position:137-463
               
               
               Cow position:chr1:41252289-41252627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 139

               
               
               Conread position:137-463
               
               
               Cow position:chr1:42360409-42360042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:137-463
               
               
               Cow position:chr1:65103736-65103412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):53, 165

               
               
               Conread position:137-463
               
               
               Cow position:chr1:80988467-80988122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):20, 26

               
               
               Conread position:137-463
               
               
               Cow position:chr1:81613510-81613161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):56, 168

               
               
               Conread position:137-565
               
               
               Cow position:chr1:4032753-4032295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 283

               
               
               Conread position:137-581
               
               
               Cow position:chr1:43447728-43448151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 73

               
               
               Conread position:139-394
               
               
               Cow position:chr1:57420617-57420881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:193
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:139-461
               
               
               Cow position:chr1:80336130-80336469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:249
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):53, 140

               
               
               Conread position:139-463
               
               
               Cow position:chr1:31499744-31499403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:242
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):54, 196

               
               
               Conread position:139-463
               
               
               Cow position:chr1:40530984-40531333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 290

               
               
               Conread position:139-463
               
               
               Cow position:chr1:80973490-80973838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:229
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):57, 29

               
               
               Conread position:139-463
               
               
               Cow position:chr1:100706245-100705908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 136

               
               
               Conread position:139-581
               
               
               Cow position:chr1:84240999-84240539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 35

               
               
               Conread position:140-458
               
               
               Cow position:chr1:94875557-94875898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):11, 22

               
               
               Conread position:140-462
               
               
               Cow position:chr1:72141690-72141341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):53, 28

               
               
               Conread position:140-463
               
               
               Cow position:chr1:76470761-76470435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 91

               
               
               Conread position:141-345
               
               
               Cow position:chr1:48769919-48769700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:142-354
               
               
               Cow position:chr1:43822515-43822290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):51, 220

               
               
               Conread position:143-456
               
               
               Cow position:chr1:37309404-37309728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 136

               
               
               Conread position:143-463
               
               
               Cow position:chr1:95215075-95215410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 87

               
               
               Conread position:144-356
               
               
               Cow position:chr1:61542805-61543031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):48, 129

               
               
               Conread position:144-463
               
               
               Cow position:chr1:37706863-37707193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:249
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):48, 89

               
               
               Conread position:145-396
               
               
               Cow position:chr1:60281486-60281215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):48, 162

               
               
               Conread position:147-418
               
               
               Cow position:chr1:12978793-12978503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):46, 67

               
               
               Conread position:147-446
               
               
               Cow position:chr1:82884284-82884597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):42, 211

               
               
               Conread position:147-463
               
               
               Cow position:chr1:10063870-10064203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):46, 148

               
               
               Conread position:147-463
               
               
               Cow position:chr1:80900230-80899883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:147-468
               
               
               Cow position:chr1:64250941-64251281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 180

               
               
               Conread position:147-470
               
               
               Cow position:chr1:81868619-81868957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:253
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):46, 10

               
               
               Conread position:148-531
               
               
               Cow position:chr1:89350075-89349685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:286
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):43, 154

               
               
               Conread position:148-577
               
               
               Cow position:chr1:26702097-26702564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 215

               
               
               Conread position:148-577
               
               
               Cow position:chr1:91039064-91039526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:328
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):45, 116

               
               
               Conread position:151-444
               
               
               Cow position:chr1:75142104-75141801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:233
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):41, 129

               
               
               Conread position:151-463
               
               
               Cow position:chr1:20205134-20204802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):42, 159

               
               
               Conread position:151-463
               
               
               Cow position:chr1:81355596-81355928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 204

               
               
               Conread position:152-463
               
               
               Cow position:chr1:3456956-3456648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):40, 54

               
               
               Conread position:153-446
               
               
               Cow position:chr1:62291596-62291893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):40, 49

               
               
               Conread position:153-463
               
               
               Cow position:chr1:45288766-45289097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 122

               
               
               Conread position:154-463
               
               
               Cow position:chr1:56635202-56634874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):38, 110

               
               
               Conread position:156-462
               
               
               Cow position:chr1:51531853-51531550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:239
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):36, 121

               
               
               Conread position:157-463
               
               
               Cow position:chr1:20384522-20384845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):35, 113

               
               
               Conread position:158-452
               
               
               Cow position:chr1:40482313-40482625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):35, 17

               
               
               Conread position:162-462
               
               
               Cow position:chr1:55146894-55146578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:247
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):31, 110

               
               
               Conread position:162-463
               
               
               Cow position:chr1:90641124-90640800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:163-463
               
               
               Cow position:chr1:26729808-26729503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 112

               
               
               Conread position:164-446
               
               
               Cow position:chr1:89485674-89485378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:223
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):29, 258

               
               
               Conread position:165-397
               
               
               Cow position:chr1:69540375-69540144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):28, 41

               
               
               Conread position:165-463
               
               
               Cow position:chr1:75443339-75443641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):45, 54

               
               
               Conread position:167-463
               
               
               Cow position:chr1:57263915-57264211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 186

               
               
               Conread position:168-431
               
               
               Cow position:chr1:70026255-70026534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):23, 63

               
               
               Conread position:169-471
               
               
               Cow position:chr1:85597027-85596712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 225

               
               
               Conread position:170-471
               
               
               Cow position:chr1:92551058-92551366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):47, 39

               
               
               Conread position:173-456
               
               
               Cow position:chr1:94404283-94403999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):62, 91

               
               
               Conread position:176-391
               
               
               Cow position:chr1:70312746-70312955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):51, 7

               
               
               Conread position:176-434
               
               
               Cow position:chr1:71257406-71257678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):37, 11

               
               
               Conread position:183-369
               
               
               Cow position:chr1:7597313-7597118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):39, 77

               
               
               Conread position:183-446
               
               
               Cow position:chr1:71643605-71643871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):42, 80

               
               
               Conread position:183-463
               
               
               Cow position:chr1:61723963-61724249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:216
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):52, 25

               
               
               Conread position:188-463
               
               
               Cow position:chr1:43379971-43380253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):37, 96

               
               
               Conread position:189-461
               
               
               Cow position:chr1:635257-634969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):28, 103

               
               
               Conread position:191-462
               
               
               Cow position:chr1:68912788-68912528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):19, 14

               
               
               Conread position:191-463
               
               
               Cow position:chr1:53595380-53595101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):26, 79

               
               
               Conread position:191-463
               
               
               Cow position:chr1:57305880-57305608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):187, 89

               
               
               Conread position:191-463
               
               
               Cow position:chr1:57395875-57396152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):38, 93

               
               
               Conread position:191-463
               
               
               Cow position:chr1:60707464-60707179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):34, 77

               
               
               Conread position:191-463
               
               
               Cow position:chr1:79591159-79590876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):75, 66

               
               
               Conread position:192-463
               
               
               Cow position:chr1:56719351-56719093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):33, 74

               
               
               Conread position:192-463
               
               
               Cow position:chr1:95035292-95035580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):33, 107

               
               
               Conread position:193-463
               
               
               Cow position:chr1:61176237-61175959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):71, 31

               
               
               Conread position:196-446
               
               
               Cow position:chr1:53423731-53423471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):22, 43

               
               
               Conread position:198-467
               
               
               Cow position:chr1:57247479-57247209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):11, 92

               
               
               Conread position:199-364
               
               
               Cow position:chr1:22394845-22394674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):26, 67

               
               
               Conread position:199-463
               
               
               Cow position:chr1:11226204-11226470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):26, 68

               
               
               Conread position:199-473
               
               
               Cow position:chr1:16961968-16962248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):26, 59

               
               
               Conread position:199-577
               
               
               Cow position:chr1:61742419-61742803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:267
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):29, 24

               
               
               Conread position:202-454
               
               
               Cow position:chr1:68996219-68995956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):23, 65

               
               
               Conread position:203-483
               
               
               Cow position:chr1:89076597-89076881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:201
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):144, 21

               
               
               Conread position:205-427
               
               
               Cow position:chr1:43703445-43703226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):20, 69

               
               
               Conread position:205-434
               
               
               Cow position:chr1:6788247-6788485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):30, 18

               
               
               Conread position:205-462
               
               
               Cow position:chr1:92434036-92433796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):30, 18

               
               
               Conread position:205-463
               
               
               Cow position:chr1:12870973-12871231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):30, 18

               
               
               Conread position:205-463
               
               
               Cow position:chr1:53425212-53424963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):20, 58

               
               
               Conread position:205-468
               
               
               Cow position:chr1:24235483-24235750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):30, 15

               
               
               Conread position:205-511
               
               
               Cow position:chr1:57297518-57297217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):30, 18

               
               
               Conread position:205-531
               
               
               Cow position:chr1:31390553-31390884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):30, 18

               
               
               Conread position:205-581
               
               
               Cow position:chr1:95654677-95655054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 18

               
               
               Conread position:212-409
               
               
               Cow position:chr1:95178985-95178786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):11, 56

               
               
               Conread position:213-409
               
               
               Cow position:chr1:92369766-92369564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):10, 141

               
               
               Conread position:213-434
               
               
               Cow position:chr1:95687074-95687301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):143, 32

               
               
               Conread position:213-457
               
               
               Cow position:chr1:22745653-22745406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):20, 10

               
               
               Conread position:213-459
               
               
               Cow position:chr1:10719450-10719705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):23, 10

               
               
               Conread position:213-462
               
               
               Cow position:chr1:51770115-51769862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):22, 10

               
               
               Conread position:213-463
               
               
               Cow position:chr1:29916442-29916190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):10, 138

               
               
               Conread position:214-462
               
               
               Cow position:chr1:102825790-102826037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):13, 51

               
               
               Conread position:214-463
               
               
               Cow position:chr1:51968491-51968246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):9, 138

               
               
               Conread position:217-463
               
               
               Cow position:chr1:3962675-3962908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):161, 48

               
               
               Conread position:218-457
               
               
               Cow position:chr1:68282816-68282578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):17, 46

               
               
               Conread position:218-463
               
               
               Cow position:chr1:57900719-57900965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):160, 37

               
               
               Conread position:218-470
               
               
               Cow position:chr1:55260407-55260662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):9, 47

               
               
               Conread position:219-463
               
               
               Cow position:chr1:15311886-15311644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):13, 27

               
               
               Conread position:219-463
               
               
               Cow position:chr1:101547000-101547266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):13, 260

               
               
               Conread position:220-462
               
               
               Cow position:chr1:56408638-56408390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):48, 9

               
               
               Conread position:221-437
               
               
               Cow position:chr1:51654445-51654212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:222-366
               
               
               Cow position:chr1:79631738-79631879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):134, 38

               
               
               Conread position:222-457
               
               
               Cow position:chr1:98311090-98310842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:193
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):10, 42

               
               
               Conread position:222-458
               
               
               Cow position:chr1:91800579-91800825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):13, 82

               
               
               Conread position:222-461
               
               
               Cow position:chr1:666386-666138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):10, 53

               
               
               Conread position:222-461
               
               
               Cow position:chr1:44769089-44769334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 129

               
               
               Conread position:222-463
               
               
               Cow position:chr1:11770272-11770518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:193
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):13, 45

               
               
               Conread position:222-463
               
               
               Cow position:chr1:45535727-45535478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):7, 53

               
               
               Conread position:222-463
               
               
               Cow position:chr1:55163939-55163698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):13, 102

               
               
               Conread position:222-463
               
               
               Cow position:chr1:57635482-57635242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):11, 37

               
               
               Conread position:222-463
               
               
               Cow position:chr1:78783568-78783322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:195
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):8, 46

               
               
               Conread position:222-468
               
               
               Cow position:chr1:47009053-47008801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:194
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):11, 61

               
               
               Conread position:222-504
               
               
               Cow position:chr1:85593794-85593507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):155, 27

               
               
               Conread position:222-558
               
               
               Cow position:chr1:22255390-22255054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:241
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):11, 35

               
               
               Conread position:222-576
               
               
               Cow position:chr1:88971075-88970713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:262
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):12, 44

               
               
               Conread position:222-577
               
               
               Cow position:chr1:55135851-55135475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 40

               
               
               Conread position:223-401
               
               
               Cow position:chr1:25387072-25386891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):129, 38

               
               
               Conread position:223-446
               
               
               Cow position:chr1:41954222-41954461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:223-462
               
               
               Cow position:chr1:25886056-25886298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):9, 109

               
               
               Conread position:223-468
               
               
               Cow position:chr1:63240980-63240718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):14, 249

               
               
               Conread position:224-354
               
               
               Cow position:chr1:80942564-80942437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:224-389
               
               
               Cow position:chr1:3955463-3955635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):119, 97

               
               
               Conread position:224-396
               
               
               Cow position:chr1:84235313-84235488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):114, 106

               
               
               Conread position:224-401
               
               
               Cow position:chr1:51684823-51684643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:147
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:224-409
               
               
               Cow position:chr1:52679312-52679146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:224-409
               
               
               Cow position:chr1:69127150-69127331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):46, 37

               
               
               Conread position:224-413
               
               
               Cow position:chr1:81638421-81638229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):125, 37

               
               
               Conread position:224-418
               
               
               Cow position:chr1:85826363-85826166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:157
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):34, 125

               
               
               Conread position:224-423
               
               
               Cow position:chr1:3243952-3243754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):130, 33

               
               
               Conread position:224-431
               
               
               Cow position:chr1:56674110-56674322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):154, 42

               
               
               Conread position:224-438
               
               
               Cow position:chr1:771808-772022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):174, 56

               
               
               Conread position:224-438
               
               
               Cow position:chr1:81471149-81470929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):37, 20

               
               
               Conread position:224-446
               
               
               Cow position:chr1:77502770-77502987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):132, 42

               
               
               Conread position:224-457
               
               
               Cow position:chr1:81472887-81472661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):186, 32

               
               
               Conread position:224-457
               
               
               Cow position:chr1:98557768-98558002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):125, 32

               
               
               Conread position:224-458
               
               
               Cow position:chr1:22448565-22448806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 127

               
               
               Conread position:224-462
               
               
               Cow position:chr1:3776601-3776837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:190
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):11, 32

               
               
               Conread position:224-462
               
               
               Cow position:chr1:4374321-4374562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 62

               
               
               Conread position:224-462
               
               
               Cow position:chr1:13547969-13548213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):131, 35

               
               
               Conread position:224-462
               
               
               Cow position:chr1:30034549-30034323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):131, 38

               
               
               Conread position:224-462
               
               
               Cow position:chr1:31341037-31341277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):132, 33

               
               
               Conread position:224-462
               
               
               Cow position:chr1:33811946-33811711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 68

               
               
               Conread position:224-462
               
               
               Cow position:chr1:58419952-58419709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):151, 33

               
               
               Conread position:224-462
               
               
               Cow position:chr1:60907393-60907138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:224-462
               
               
               Cow position:chr1:71953092-71952864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):184, 25

               
               
               Conread position:224-463
               
               
               Cow position:chr1:1916211-1916459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):52, 42

               
               
               Conread position:224-463
               
               
               Cow position:chr1:3244866-3244626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):154, 76

               
               
               Conread position:224-463
               
               
               Cow position:chr1:29900949-29901181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:191
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):46, 104

               
               
               Conread position:224-463
               
               
               Cow position:chr1:56748617-56748365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:191
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:224-463
               
               
               Cow position:chr1:61725098-61725337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):155, 46

               
               
               Conread position:224-463
               
               
               Cow position:chr1:63905458-63905698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 33

               
               
               Conread position:224-463
               
               
               Cow position:chr1:73561631-73561874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:189
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):125, 73

               
               
               Conread position:224-463
               
               
               Cow position:chr1:89741984-89742236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):155, 38

               
               
               Conread position:224-463
               
               
               Cow position:chr1:90864277-90864524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):33, 53

               
               
               Conread position:224-463
               
               
               Cow position:chr1:99637764-99638004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):130, 33

               
               
               Conread position:224-465
               
               
               Cow position:chr1:68782620-68782877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):45, 192

               
               
               Conread position:224-466
               
               
               Cow position:chr1:1802157-1801912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:187
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):45, 38

               
               
               Conread position:224-469
               
               
               Cow position:chr1:78794720-78794966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):35, 98

               
               
               Conread position:224-471
               
               
               Cow position:chr1:3751922-3752174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):123, 33

               
               
               Conread position:224-472
               
               
               Cow position:chr1:88618612-88618360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:193
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):154, 55

               
               
               Conread position:224-476
               
               
               Cow position:chr1:64962651-64962891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):122, 66

               
               
               Conread position:224-490
               
               
               Cow position:chr1:38544448-38544696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 33

               
               
               Conread position:224-577
               
               
               Cow position:chr1:50679263-50679618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 235

               
               
               Conread position:224-577
               
               
               Cow position:chr1:86512147-86511795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):151, 42

               
               
               Conread position:224-581
               
               
               Cow position:chr1:83593792-83594147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 37

               
               
               Conread position:225-337
               
               
               Cow position:chr1:4221824-4221933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:225-356
               
               
               Cow position:chr1:71716526-71716397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):52, 62

               
               
               Conread position:225-373
               
               
               Cow position:chr1:10952211-10952361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:225-386
               
               
               Cow position:chr1:93228540-93228383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):148, 37

               
               
               Conread position:225-396
               
               
               Cow position:chr1:44110776-44110597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):78, 37

               
               
               Conread position:225-409
               
               
               Cow position:chr1:9470383-9470566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):153, 32

               
               
               Conread position:225-421
               
               
               Cow position:chr1:24445612-24445811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):153, 37

               
               
               Conread position:225-461
               
               
               Cow position:chr1:100770738-100770961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):143, 41

               
               
               Conread position:225-463
               
               
               Cow position:chr1:24655973-24655736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):125, 37

               
               
               Conread position:225-463
               
               
               Cow position:chr1:31234916-31235156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):154, 38

               
               
               Conread position:225-463
               
               
               Cow position:chr1:45007479-45007242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):153, 43

               
               
               Conread position:225-463
               
               
               Cow position:chr1:52753145-52753390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):36, 74

               
               
               Conread position:225-463
               
               
               Cow position:chr1:68951642-68951407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:189
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):32, 44

               
               
               Conread position:225-463
               
               
               Cow position:chr1:71818446-71818686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):153, 32

               
               
               Conread position:225-463
               
               
               Cow position:chr1:78184712-78184479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):32, 159

               
               
               Conread position:225-463
               
               
               Cow position:chr1:82504991-82504742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:192
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):78, 37

               
               
               Conread position:225-468
               
               
               Cow position:chr1:3340953-3340708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):154, 92

               
               
               Conread position:225-478
               
               
               Cow position:chr1:79278431-79278681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):43, 30

               
               
               Conread position:225-482
               
               
               Cow position:chr1:182819-182564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):41, 15

               
               
               Conread position:225-577
               
               
               Cow position:chr1:57639500-57639868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:253
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):72, 36

               
               
               Conread position:226-463
               
               
               Cow position:chr1:5872953-5873196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:183
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):36, 59

               
               
               Conread position:226-463
               
               
               Cow position:chr1:11873347-11873581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:184
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):181, 36

               
               
               Conread position:226-511
               
               
               Cow position:chr1:54162790-54163080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):111, 125

               
               
               Conread position:227-462
               
               
               Cow position:chr1:33702130-33701897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):129, 13

               
               
               Conread position:228-416
               
               
               Cow position:chr1:32596469-32596276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):113, 36

               
               
               Conread position:228-439
               
               
               Cow position:chr1:89437926-89438136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):80, 37

               
               
               Conread position:229-369
               
               
               Cow position:chr1:8984672-8984810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):45, 64

               
               
               Conread position:229-394
               
               
               Cow position:chr1:6961919-6961757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):74, 28

               
               
               Conread position:229-446
               
               
               Cow position:chr1:5393861-5394078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):128, 28

               
               
               Conread position:229-446
               
               
               Cow position:chr1:51818953-51818734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):127, 41

               
               
               Conread position:229-461
               
               
               Cow position:chr1:56658044-56657816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):149, 33

               
               
               Conread position:229-462
               
               
               Cow position:chr1:5409604-5409837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):127, 28

               
               
               Conread position:229-481
               
               
               Cow position:chr1:32013965-32013711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):149, 41

               
               
               Conread position:229-525
               
               
               Cow position:chr1:4573531-4573218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):175, 28

               
               
               Conread position:230-461
               
               
               Cow position:chr1:24728829-24729062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):143, 31

               
               
               Conread position:230-461
               
               
               Cow position:chr1:68276426-68276184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):39, 51

               
               
               Conread position:230-461
               
               
               Cow position:chr1:81363998-81363770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):74, 31

               
               
               Conread position:230-463
               
               
               Cow position:chr1:20002218-20002460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):19, 157

               
               
               Conread position:230-463
               
               
               Cow position:chr1:34000921-34000681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):125, 40

               
               
               Conread position:230-463
               
               
               Cow position:chr1:96478710-96478471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:230-463
               
               
               Cow position:chr1:100512619-100512371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:231-392
               
               
               Cow position:chr1:10519029-10519192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):140, 33

               
               
               Conread position:231-403
               
               
               Cow position:chr1:101946705-101946869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:231-408
               
               
               Cow position:chr1:70028589-70028415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):145, 33

               
               
               Conread position:231-460
               
               
               Cow position:chr1:24528612-24528820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):182, 34

               
               
               Conread position:231-463
               
               
               Cow position:chr1:1403472-1403698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):173, 31

               
               
               Conread position:231-463
               
               
               Cow position:chr1:2765423-2765192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):31, 40

               
               
               Conread position:231-463
               
               
               Cow position:chr1:19998033-19998260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):147, 26

               
               
               Conread position:231-463
               
               
               Cow position:chr1:44155258-44155038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):41, 58

               
               
               Conread position:231-463
               
               
               Cow position:chr1:61284064-61283801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:231-463
               
               
               Cow position:chr1:62920177-62919952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):30, 104

               
               
               Conread position:231-463
               
               
               Cow position:chr1:88652640-88652406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:181
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):31, 42

               
               
               Conread position:231-463
               
               
               Cow position:chr1:89341977-89342217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):31, 125

               
               
               Conread position:231-463
               
               
               Cow position:chr1:95050078-95050324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 62

               
               
               Conread position:231-468
               
               
               Cow position:chr1:99095373-99095134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:184
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):39, 25

               
               
               Conread position:231-470
               
               
               Cow position:chr1:26943317-26943080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):144, 39

               
               
               Conread position:231-470
               
               
               Cow position:chr1:44165095-44164847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):32, 118

               
               
               Conread position:231-471
               
               
               Cow position:chr1:83747952-83747708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):37, 63

               
               
               Conread position:231-581
               
               
               Cow position:chr1:29671512-29671881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:270
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):30, 17

               
               
               Conread position:232-442
               
               
               Cow position:chr1:82443446-82443659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:168
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):146, 41

               
               
               Conread position:233-406
               
               
               Cow position:chr1:75347632-75347455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):33, 115

               
               
               Conread position:233-462
               
               
               Cow position:chr1:75967438-75967213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:179
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):144, 35

               
               
               Conread position:233-463
               
               
               Cow position:chr1:4294064-4293838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:180
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):174, 28

               
               
               Conread position:233-463
               
               
               Cow position:chr1:79663666-79663890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):145, 24

               
               
               Conread position:233-573
               
               
               Cow position:chr1:55194461-55194797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 24

               
               
               Conread position:234-463
               
               
               Cow position:chr1:12595895-12596125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):144, 114

               
               
               Conread position:234-463
               
               
               Cow position:chr1:41004354-41004591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):144, 112

               
               
               Conread position:234-463
               
               
               Cow position:chr1:71946364-71946595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:176
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):34, 116

               
               
               Conread position:234-472
               
               
               Cow position:chr1:99136423-99136662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):28, 47

               
               
               Conread position:235-457
               
               
               Cow position:chr1:77099542-77099756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):38, 76

               
               
               Conread position:235-463
               
               
               Cow position:chr1:22467942-22467706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):35, 59

               
               
               Conread position:235-581
               
               
               Cow position:chr1:91142143-91142509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:264
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):18, 53

               
               
               Conread position:236-463
               
               
               Cow position:chr1:43358006-43358239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):116, 47

               
               
               Conread position:236-463
               
               
               Cow position:chr1:82861785-82861550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):25, 38

               
               
               Conread position:237-419
               
               
               Cow position:chr1:98396957-98397134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:239-463
               
               
               Cow position:chr1:96184016-96184232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):137, 7

               
               
               Conread position:240-458
               
               
               Cow position:chr1:45673715-45673492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):29, 191

               
               
               Conread position:240-462
               
               
               Cow position:chr1:7350548-7350315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):26, 112

               
               
               Conread position:240-463
               
               
               Cow position:chr1:78689936-78689709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):103, 22

               
               
               Conread position:243-471
               
               
               Cow position:chr1:42053332-42053556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):34, 77

               
               
               Conread position:244-469
               
               
               Cow position:chr1:81277201-81277432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):11, 101

               
               
               Conread position:245-461
               
               
               Cow position:chr1:4618865-4619091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):62, 35

               
               
               Conread position:245-463
               
               
               Cow position:chr1:98577488-98577253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):68, 17

               
               
               Conread position:248-460
               
               
               Cow position:chr1:84116388-84116180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):130, 16

               
               
               Conread position:249-459
               
               
               Cow position:chr1:87216452-87216242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):129, 36

               
               
               Conread position:250-470
               
               
               Cow position:chr1:57698455-57698685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):105, 46

               
               
               Conread position:251-461
               
               
               Cow position:chr1:69940978-69941187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):148, 6

               
               
               Conread position:253-462
               
               
               Cow position:chr1:4589485-4589704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):118, 27

               
               
               Conread position:253-463
               
               
               Cow position:chr1:28412350-28412550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):50, 27

               
               
               Conread position:255-428
               
               
               Cow position:chr1:101007631-101007809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):9, 137

               
               
               Conread position:255-463
               
               
               Cow position:chr1:5162062-5162277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):75, 9

               
               
               Conread position:256-467
               
               
               Cow position:chr1:80870102-80869878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):122, 92

               
               
               Conread position:256-577
               
               
               Cow position:chr1:67995119-67994795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):14, 67

               
               
               Conread position:257-453
               
               
               Cow position:chr1:101207808-101207619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):114, 45

               
               
               Conread position:257-468
               
               
               Cow position:chr1:20288107-20287885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):14, 94

               
               
               Conread position:257-477
               
               
               Cow position:chr1:5062013-5061783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):75, 90

               
               
               Conread position:258-470
               
               
               Cow position:chr1:51836555-51836340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):71, 92

               
               
               Conread position:259-463
               
               
               Cow position:chr1:77658051-77657841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):65, 84

               
               
               Conread position:260-469
               
               
               Cow position:chr1:27495469-27495266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):6, 60

               
               
               Conread position:261-425
               
               
               Cow position:chr1:89083094-89082921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):16, 89

               
               
               Conread position:261-471
               
               
               Cow position:chr1:3035010-3035224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):19, 89

               
               
               Conread position:262-439
               
               
               Cow position:chr1:53613214-53613393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):8, 35

               
               
               Conread position:265-463
               
               
               Cow position:chr1:98380594-98380801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):53, 83

               
               
               Conread position:267-446
               
               
               Cow position:chr1:342166-342352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):106, 13

               
               
               Conread position:268-463
               
               
               Cow position:chr1:81179997-81180204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:268-463
               
               
               Cow position:chr1:85361835-85361631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):85, 49

               
               
               Conread position:269-395
               
               
               Cow position:chr1:73536712-73536587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):84, 109

               
               
               Conread position:269-413
               
               
               Cow position:chr1:72422599-72422743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):115, 79

               
               
               Conread position:269-463
               
               
               Cow position:chr1:52506581-52506768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):144, 52

               
               
               Conread position:269-463
               
               
               Cow position:chr1:81563710-81563509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):109, 79

               
               
               Conread position:272-461
               
               
               Cow position:chr1:80555223-80555405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):51, 77

               
               
               Conread position:273-463
               
               
               Cow position:chr1:98708410-98708218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):114, 75

               
               
               Conread position:273-465
               
               
               Cow position:chr1:95327181-95327379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):104, 48

               
               
               Conread position:273-471
               
               
               Cow position:chr1:37646032-37646232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):6, 80

               
               
               Conread position:275-440
               
               
               Cow position:chr1:49753896-49753729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):103, 74

               
               
               Conread position:275-461
               
               
               Cow position:chr1:71938545-71938734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):69, 61

               
               
               Conread position:276-461
               
               
               Cow position:chr1:56711652-56711844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:276-462
               
               
               Cow position:chr1:20799852-20799649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:277-463
               
               
               Cow position:chr1:89395567-89395368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:277-463
               
               
               Cow position:chr1:97806754-97806568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):103, 71

               
               
               Conread position:282-438
               
               
               Cow position:chr1:7450091-7449933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):96, 119

               
               
               Conread position:282-461
               
               
               Cow position:chr1:21093053-21092869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):129, 65

               
               
               Conread position:283-461
               
               
               Cow position:chr1:61246199-61246376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):109, 65

               
               
               Conread position:283-463
               
               
               Cow position:chr1:71325288-71325471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):68, 10

               
               
               Conread position:285-482
               
               
               Cow position:chr1:19545141-19545342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):93, 65

               
               
               Conread position:285-581
               
               
               Cow position:chr1:44136508-44136822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:231
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):114, 63

               
               
               Conread position:288-463
               
               
               Cow position:chr1:30504426-30504246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):111, 60

               
               
               Conread position:288-463
               
               
               Cow position:chr1:36613320-36613499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):90, 60

               
               
               Conread position:292-461
               
               
               Cow position:chr1:43893876-43893703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):83, 56

               
               
               Conread position:293-463
               
               
               Cow position:chr1:39702771-39702606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):114, 35

               
               
               Conread position:294-463
               
               
               Cow position:chr1:64160289-64160116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:294-471
               
               
               Cow position:chr1:19516456-19516637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):84, 28

               
               
               Conread position:297-463
               
               
               Cow position:chr1:69445310-69445147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):102, 65

               
               
               Conread position:297-463
               
               
               Cow position:chr1:84786721-84786546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):52, 45

               
               
               Conread position:299-471
               
               
               Cow position:chr1:7186739-7186556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):54, 177

               
               
               Conread position:299-514
               
               
               Cow position:chr1:99118333-99118103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):33, 18

               
               
               Conread position:306-463
               
               
               Cow position:chr1:32631404-32631242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:306-463
               
               
               Cow position:chr1:33717165-33716997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:307-463
               
               
               Cow position:chr1:3757892-3757728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:311-463
               
               
               Cow position:chr1:24201814-24201963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 69

               
               
               Conread position:312-463
               
               
               Cow position:chr1:95071915-95071761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):66, 38

               
               
               Conread position:325-461
               
               
               Cow position:chr1:65638127-65637982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:325-577
               
               
               Cow position:chr1:58196180-58196449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:332-463
               
               
               Cow position:chr1:62996405-62996270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):47, 17

               
               
               Conread position:337-577
               
               
               Cow position:chr1:53650800-53650540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):41, 10

               
               
               Conread position:351-566
               
               
               Cow position:chr1:77168849-77168618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):27, 225

               
               
               Conread position:420-581
               
               
               Cow position:chr1:65394331-65394167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):44, 0
Show alignments to all cow chromosomes.