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Cow genome map

           
Conread name:
           
rpigcf0_018626.y1
        

               
Conread position:
               
1-156
               

               
Cow position:
               
chr12:37123237-37123388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
1-164
               

               
Cow position:
               
chr12:19420208-19420044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
130, 41
               

               
Conread position:
               
1-194
               

               
Cow position:
               
chr12:19872162-19872342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
118, 61
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr12:18937111-18937332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr12:3039238-3039439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
124, 67
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr12:44846117-44846350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
84, 57
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr12:32391569-32391820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
98, 136
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr12:6698504-6698750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
100, 52
               

               
Conread position:
               
1-249
               

               
Cow position:
               
chr12:24440536-24440792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
48, 86
               

               
Conread position:
               
1-249
               

               
Cow position:
               
chr12:25455838-25456096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
82, 133
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr12:26782605-26782874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
80, 263
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr12:34385790-34385512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 85
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr12:3956051-3955770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
121, 45
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr12:44014116-44013837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 149
               

               
Conread position:
               
1-292
               

               
Cow position:
               
chr12:12178645-12178943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 125
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr12:20326495-20326801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 17
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr12:15783657-15783949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
204, 78
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr12:19508848-19508531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
1-301
               

               
Cow position:
               
chr12:25805386-25805103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
1-301
               

               
Cow position:
               
chr12:34148627-34148332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
79, 65
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr12:16605922-16605636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
257, 88
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr12:45160788-45160482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
80, 172
               

               
Conread position:
               
1-311
               

               
Cow position:
               
chr12:18518395-18518712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
200, 69
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr12:3076899-3076587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 199
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr12:3473266-3472958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
85, 164
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr12:16359598-16359904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 199
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr12:41091253-41091573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 220
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr12:42160833-42160519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 204
               

               
Conread position:
               
1-315
               

               
Cow position:
               
chr12:18076258-18076559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
126, 83
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr12:8869159-8868820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 130
               

               
Conread position:
               
1-335
               

               
Cow position:
               
chr12:40110113-40110435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
173, 79
               

               
Conread position:
               
1-338
               

               
Cow position:
               
chr12:30170391-30170735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
93, 125
               

               
Conread position:
               
1-344
               

               
Cow position:
               
chr12:2711216-2711571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 268
               

               
Conread position:
               
1-344
               

               
Cow position:
               
chr12:30605432-30605093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
93, 128
               

               
Conread position:
               
1-344
               

               
Cow position:
               
chr12:30662226-30661877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 216
               

               
Conread position:
               
1-345
               

               
Cow position:
               
chr12:2812947-2813301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
80, 31
               

               
Conread position:
               
1-345
               

               
Cow position:
               
chr12:5905781-5906130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 106
               

               
Conread position:
               
1-345
               

               
Cow position:
               
chr12:9229758-9229426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
327, 124
               

               
Conread position:
               
1-345
               

               
Cow position:
               
chr12:9914513-9914863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 75
               

               
Conread position:
               
1-345
               

               
Cow position:
               
chr12:25561094-25561443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 126
               

               
Conread position:
               
1-345
               

               
Cow position:
               
chr12:28582768-28582435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
195, 72
               

               
Conread position:
               
1-345
               

               
Cow position:
               
chr12:30753451-30753793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 22
               

               
Conread position:
               
1-345
               

               
Cow position:
               
chr12:41473819-41474163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 75
               

               
Conread position:
               
1-346
               

               
Cow position:
               
chr12:3950627-3950270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 182
               

               
Conread position:
               
1-346
               

               
Cow position:
               
chr12:29969299-29969654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 136
               

               
Conread position:
               
1-346
               

               
Cow position:
               
chr12:42602516-42602168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
93, 132
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr12:10895824-10895476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 120
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr12:6411004-6410656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 89
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr12:7977771-7978115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 66
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr12:19865966-19866320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 14
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr12:25320647-25320992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
327, 93
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr12:31959617-31959957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
18, 94
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr12:34007023-34007378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 166
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr12:35310949-35310607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
325, 115
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr12:35368367-35368720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 82
               

               
Conread position:
               
2-192
               

               
Cow position:
               
chr12:3880531-3880339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
79, 131
               

               
Conread position:
               
2-199
               

               
Cow position:
               
chr12:3615615-3615806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
2-208
               

               
Cow position:
               
chr12:26223260-26223060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
48, 25
               

               
Conread position:
               
2-212
               

               
Cow position:
               
chr12:3070835-3071044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
85, 61
               

               
Conread position:
               
2-300
               

               
Cow position:
               
chr12:18040866-18040580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
125, 74
               

               
Conread position:
               
2-345
               

               
Cow position:
               
chr12:21922160-21922524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
88, 94
               

               
Conread position:
               
2-346
               

               
Cow position:
               
chr12:29484165-29483811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 93
               

               
Conread position:
               
2-349
               

               
Cow position:
               
chr12:4341995-4341666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
206, 92
               

               
Conread position:
               
2-349
               

               
Cow position:
               
chr12:44518010-44517660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 34
               

               
Conread position:
               
3-263
               

               
Cow position:
               
chr12:11583130-11583381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
129, 35
               

               
Conread position:
               
3-278
               

               
Cow position:
               
chr12:3568672-3568947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
89, 67
               

               
Conread position:
               
3-282
               

               
Cow position:
               
chr12:27563111-27562818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 250
               

               
Conread position:
               
3-300
               

               
Cow position:
               
chr12:41083793-41084084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
86, 11
               

               
Conread position:
               
3-301
               

               
Cow position:
               
chr12:15258979-15258688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
195, 122
               

               
Conread position:
               
3-343
               

               
Cow position:
               
chr12:46314967-46314632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
119, 76
               

               
Conread position:
               
3-345
               

               
Cow position:
               
chr12:6210431-6210084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 122
               

               
Conread position:
               
3-345
               

               
Cow position:
               
chr12:29780176-29779840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 156
               

               
Conread position:
               
3-345
               

               
Cow position:
               
chr12:42698497-42698172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 122
               

               
Conread position:
               
3-349
               

               
Cow position:
               
chr12:9143119-9143465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
78, 126
               

               
Conread position:
               
3-349
               

               
Cow position:
               
chr12:45820631-45820288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
91, 40
               

               
Conread position:
               
4-204
               

               
Cow position:
               
chr12:29694311-29694121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
127, 64
               

               
Conread position:
               
4-209
               

               
Cow position:
               
chr12:37770602-37770803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
89, 98
               

               
Conread position:
               
4-246
               

               
Cow position:
               
chr12:41214592-41214347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
189, 16
               

               
Conread position:
               
4-278
               

               
Cow position:
               
chr12:4116231-4116495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
194, 44
               

               
Conread position:
               
4-280
               

               
Cow position:
               
chr12:26317186-26317473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
23, 62
               

               
Conread position:
               
4-295
               

               
Cow position:
               
chr12:23154740-23154455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
64, 167
               

               
Conread position:
               
4-298
               

               
Cow position:
               
chr12:16543842-16543554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
147, 81
               

               
Conread position:
               
4-300
               

               
Cow position:
               
chr12:21045333-21045038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
186, 52
               

               
Conread position:
               
4-309
               

               
Cow position:
               
chr12:30728512-30728209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
82, 149
               

               
Conread position:
               
4-312
               

               
Cow position:
               
chr12:20316780-20316491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
127, 80
               

               
Conread position:
               
4-341
               

               
Cow position:
               
chr12:34466275-34465934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
131, 69
               

               
Conread position:
               
4-343
               

               
Cow position:
               
chr12:22516010-22515663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
68, 28
               

               
Conread position:
               
4-345
               

               
Cow position:
               
chr12:18943917-18943584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
209, 75
               

               
Conread position:
               
4-345
               

               
Cow position:
               
chr12:22881778-22882129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 29
               

               
Conread position:
               
4-345
               

               
Cow position:
               
chr12:27803323-27802976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 125
               

               
Conread position:
               
4-345
               

               
Cow position:
               
chr12:39465305-39465653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
77, 125
               

               
Conread position:
               
4-345
               

               
Cow position:
               
chr12:45814538-45814188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
4-345
               

               
Cow position:
               
chr12:47803881-47804230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 122
               

               
Conread position:
               
4-349
               

               
Cow position:
               
chr12:5714355-5714704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 121
               

               
Conread position:
               
4-349
               

               
Cow position:
               
chr12:18123413-18123747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
337, 121
               

               
Conread position:
               
4-349
               

               
Cow position:
               
chr12:33323772-33323417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 125
               

               
Conread position:
               
4-349
               

               
Cow position:
               
chr12:40910564-40910208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 123
               

               
Conread position:
               
4-349
               

               
Cow position:
               
chr12:41580843-41581189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 20
               

               
Conread position:
               
4-349
               

               
Cow position:
               
chr12:42966727-42967072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 121
               

               
Conread position:
               
5-172
               

               
Cow position:
               
chr12:9465733-9465563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
20, 166
               

               
Conread position:
               
5-194
               

               
Cow position:
               
chr12:40158512-40158323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
87, 126
               

               
Conread position:
               
5-275
               

               
Cow position:
               
chr12:3510292-3510564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
76, 12
               

               
Conread position:
               
5-344
               

               
Cow position:
               
chr12:8943492-8943151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 42
               

               
Conread position:
               
5-345
               

               
Cow position:
               
chr12:28257318-28256982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
117, 42
               

               
Conread position:
               
5-349
               

               
Cow position:
               
chr12:4866542-4866895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 198
               

               
Conread position:
               
5-349
               

               
Cow position:
               
chr12:20479586-20479260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
179, 86
               

               
Conread position:
               
5-349
               

               
Cow position:
               
chr12:37993998-37993654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 122
               

               
Conread position:
               
5-349
               

               
Cow position:
               
chr12:42181413-42181051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 110
               

               
Conread position:
               
6-233
               

               
Cow position:
               
chr12:28650683-28650911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
86, 17
               

               
Conread position:
               
6-340
               

               
Cow position:
               
chr12:5800764-5801112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 62
               

               
Conread position:
               
6-349
               

               
Cow position:
               
chr12:7000863-7000527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 67
               

               
Conread position:
               
6-349
               

               
Cow position:
               
chr12:15173547-15173901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
68, 112
               

               
Conread position:
               
7-234
               

               
Cow position:
               
chr12:38010319-38010106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
7-298
               

               
Cow position:
               
chr12:25177864-25177572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
35, 129
               

               
Conread position:
               
7-345
               

               
Cow position:
               
chr12:1773937-1773587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
121, 101
               

               
Conread position:
               
7-345
               

               
Cow position:
               
chr12:27563651-27563303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
74, 39
               

               
Conread position:
               
7-349
               

               
Cow position:
               
chr12:31228304-31228649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 118
               

               
Conread position:
               
9-245
               

               
Cow position:
               
chr12:17702501-17702253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
72, 119
               

               
Conread position:
               
12-348
               

               
Cow position:
               
chr12:42283102-42282759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 123
               

               
Conread position:
               
13-267
               

               
Cow position:
               
chr12:24107802-24107550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
48, 62
               

               
Conread position:
               
14-210
               

               
Cow position:
               
chr12:28804730-28804926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
67, 123
               

               
Conread position:
               
14-349
               

               
Cow position:
               
chr12:46333099-46333422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
194, 23
               

               
Conread position:
               
15-210
               

               
Cow position:
               
chr12:29162073-29161884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
16-343
               

               
Cow position:
               
chr12:31532665-31532332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
180, 61
               

               
Conread position:
               
17-343
               

               
Cow position:
               
chr12:5940083-5940413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 117
               

               
Conread position:
               
18-341
               

               
Cow position:
               
chr12:17774546-17774864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 61
               

               
Conread position:
               
23-347
               

               
Cow position:
               
chr12:24024045-24023726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
191, 21
               

               
Conread position:
               
23-349
               

               
Cow position:
               
chr12:5635702-5635375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 103
               

               
Conread position:
               
24-235
               

               
Cow position:
               
chr12:6226900-6226689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
183, 50
               

               
Conread position:
               
24-347
               

               
Cow position:
               
chr12:23797850-23798175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 110
               

               
Conread position:
               
27-345
               

               
Cow position:
               
chr12:28213268-28213583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 98
               

               
Conread position:
               
29-345
               

               
Cow position:
               
chr12:18766229-18765899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 73
               

               
Conread position:
               
33-312
               

               
Cow position:
               
chr12:5658320-5658037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
48, 178
               

               
Conread position:
               
34-345
               

               
Cow position:
               
chr12:34161174-34161487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
30, 58
               

               
Conread position:
               
35-298
               

               
Cow position:
               
chr12:40028997-40028728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
98, 55
               

               
Conread position:
               
36-194
               

               
Cow position:
               
chr12:24180656-24180811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
79, 43
               

               
Conread position:
               
37-212
               

               
Cow position:
               
chr12:43582538-43582706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
129, 42
               

               
Conread position:
               
37-272
               

               
Cow position:
               
chr12:12031075-12030828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
12, 95
               

               
Conread position:
               
37-300
               

               
Cow position:
               
chr12:6275344-6275072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
44, 99
               

               
Conread position:
               
39-246
               

               
Cow position:
               
chr12:30476239-30476456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
43, 90
               

               
Conread position:
               
40-312
               

               
Cow position:
               
chr12:20071822-20071533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
40, 263
               

               
Conread position:
               
40-326
               

               
Cow position:
               
chr12:1889817-1889524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
162, 85
               

               
Conread position:
               
41-307
               

               
Cow position:
               
chr12:5459027-5459284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
86, 124
               

               
Conread position:
               
41-348
               

               
Cow position:
               
chr12:15162914-15163216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
287, 89
               

               
Conread position:
               
42-349
               

               
Cow position:
               
chr12:4162606-4162277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
38, 87
               

               
Conread position:
               
44-246
               

               
Cow position:
               
chr12:38454685-38454883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
152, 24
               

               
Conread position:
               
46-336
               

               
Cow position:
               
chr12:12579256-12578967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
279, 86
               

               
Conread position:
               
48-249
               

               
Cow position:
               
chr12:25820662-25820453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
31, 46
               

               
Conread position:
               
48-311
               

               
Cow position:
               
chr12:3906239-3906512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
33, 85
               

               
Conread position:
               
48-344
               

               
Cow position:
               
chr12:17636402-17636691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
32, 9
               

               
Conread position:
               
48-348
               

               
Cow position:
               
chr12:30210249-30210560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
45, 91
               

               
Conread position:
               
49-349
               

               
Cow position:
               
chr12:27037677-27037372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
32, 80
               

               
Conread position:
               
50-234
               

               
Cow position:
               
chr12:4085693-4085871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
160, 77
               

               
Conread position:
               
52-246
               

               
Cow position:
               
chr12:18021368-18021566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
42, 74
               

               
Conread position:
               
52-325
               

               
Cow position:
               
chr12:25452667-25452394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
138, 9
               

               
Conread position:
               
52-334
               

               
Cow position:
               
chr12:18964154-18963866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
21, 79
               

               
Conread position:
               
52-349
               

               
Cow position:
               
chr12:4596224-4596542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
57-345
               

               
Cow position:
               
chr12:36544869-36544568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
139, 68
               

               
Conread position:
               
58-345
               

               
Cow position:
               
chr12:45680048-45680351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
62-348
               

               
Cow position:
               
chr12:33851140-33851434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
19, 67
               

               
Conread position:
               
63-325
               

               
Cow position:
               
chr12:19401017-19400763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
105, 8
               

               
Conread position:
               
63-337
               

               
Cow position:
               
chr12:22539987-22540273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
64, 24
               

               
Conread position:
               
63-346
               

               
Cow position:
               
chr12:25444708-25444989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
31, 5
               

               
Conread position:
               
65-349
               

               
Cow position:
               
chr12:42162827-42163116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
16, 36
               

               
Conread position:
               
68-221
               

               
Cow position:
               
chr12:7919837-7919993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
21, 62
               

               
Conread position:
               
69-180
               

               
Cow position:
               
chr12:6121146-6121262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
72-267
               

               
Cow position:
               
chr12:13066313-13066505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
40, 54
               

               
Conread position:
               
76-187
               

               
Cow position:
               
chr12:42477552-42477662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
76-345
               

               
Cow position:
               
chr12:33976002-33976273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
127, 21
               

               
Conread position:
               
79-345
               

               
Cow position:
               
chr12:7299666-7299385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
79-345
               

               
Cow position:
               
chr12:12300731-12300992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
133, 34
               

               
Conread position:
               
81-349
               

               
Cow position:
               
chr12:23916645-23916920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
10, 51
               

               
Conread position:
               
82-348
               

               
Cow position:
               
chr12:15050810-15050548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
130, 24
               

               
Conread position:
               
85-349
               

               
Cow position:
               
chr12:46714177-46714447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
41, 30
               

               
Conread position:
               
86-349
               

               
Cow position:
               
chr12:11587576-11587852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
91-236
               

               
Cow position:
               
chr12:7191448-7191298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
114, 51
               

               
Conread position:
               
94-326
               

               
Cow position:
               
chr12:10491089-10491326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
90, 193
               

               
Conread position:
               
95-278
               

               
Cow position:
               
chr12:29921964-29921779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
110, 36
               

               
Conread position:
               
95-300
               

               
Cow position:
               
chr12:18420288-18420498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
111, 35
               

               
Conread position:
               
95-344
               

               
Cow position:
               
chr12:38774422-38774170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
110, 35
               

               
Conread position:
               
95-349
               

               
Cow position:
               
chr12:12637370-12637110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
24, 96
               

               
Conread position:
               
99-349
               

               
Cow position:
               
chr12:4820771-4821039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
34, 218
               

               
Conread position:
               
100-312
               

               
Cow position:
               
chr12:1998977-1998761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
32, 51
               

               
Conread position:
               
100-348
               

               
Cow position:
               
chr12:4719768-4720024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
96, 30
               

               
Conread position:
               
102-348
               

               
Cow position:
               
chr12:44919859-44920107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
103, 29
               

               
Conread position:
               
103-300
               

               
Cow position:
               
chr12:20636333-20636124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
103-340
               

               
Cow position:
               
chr12:42174240-42174485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
27, 172
               

               
Conread position:
               
104-349
               

               
Cow position:
               
chr12:3623520-3623772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
102, 5
               

               
Conread position:
               
104-349
               

               
Cow position:
               
chr12:42233883-42234137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
24, 36
               

               
Conread position:
               
106-349
               

               
Cow position:
               
chr12:3599924-3599682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
218, 24
               

               
Conread position:
               
111-326
               

               
Cow position:
               
chr12:9894616-9894836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
114-345
               

               
Cow position:
               
chr12:41216047-41215811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
70, 11
               

               
Conread position:
               
114-349
               

               
Cow position:
               
chr12:13988206-13988447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
115-307
               

               
Cow position:
               
chr12:41658885-41658690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
101, 9
               

               
Conread position:
               
115-349
               

               
Cow position:
               
chr12:36790973-36790734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
85, 10
               

               
Conread position:
               
116-312
               

               
Cow position:
               
chr12:6102991-6102788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
15, 137
               

               
Conread position:
               
116-312
               

               
Cow position:
               
chr12:15039137-15038936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
81, 5
               

               
Conread position:
               
125-337
               

               
Cow position:
               
chr12:38184443-38184659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
131-345
               

               
Cow position:
               
chr12:26217974-26217750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
131-349
               

               
Cow position:
               
chr12:19258131-19258355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
78, 147
               

               
Conread position:
               
135-348
               

               
Cow position:
               
chr12:7110056-7110274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
148-345
               

               
Cow position:
               
chr12:24152206-24152414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
149-344
               

               
Cow position:
               
chr12:9146819-9147013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
150-349
               

               
Cow position:
               
chr12:37008833-37008629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
47, 127
               

               
Conread position:
               
162-345
               

               
Cow position:
               
chr12:21780047-21780236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
201-349
               

               
Cow position:
               
chr12:45168087-45167942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
211-346
               

               
Cow position:
               
chr12:4797239-4797375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
117, 0
               
Show alignments to all cow chromosomes.