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Cow genome map

           
Conread name:
           
rpigcf0_018626.y1
        

               
Conread position:
               
1-190
               

               
Cow position:
               
chr20:32069052-32068860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
80, 133
               

               
Conread position:
               
1-194
               

               
Cow position:
               
chr20:3034899-3035100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
69, 21
               

               
Conread position:
               
1-194
               

               
Cow position:
               
chr20:10468876-10469062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
1-194
               

               
Cow position:
               
chr20:35760476-35760666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
1-195
               

               
Cow position:
               
chr20:19410564-19410367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
61, 115
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr20:11923435-11923201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
10, 76
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr20:15761143-15760905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 126
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chr20:27314487-27314715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
130, 21
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr20:7132153-7132402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr20:9379214-9379461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 124
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr20:20312932-20312692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 67
               

               
Conread position:
               
1-249
               

               
Cow position:
               
chr20:23936610-23936346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
38, 19
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chr20:21016283-21016552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
128, 12
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr20:30777981-30778252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
124, 78
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr20:40256775-40257053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 57
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr20:13967453-13967169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 78
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr20:39377340-39377079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr20:10884561-10884268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
73, 190
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr20:36997519-36997788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
88, 135
               

               
Conread position:
               
1-282
               

               
Cow position:
               
chr20:30817342-30817627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 76
               

               
Conread position:
               
1-297
               

               
Cow position:
               
chr20:35958450-35958754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 130
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr20:14806691-14806996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 78
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr20:19459839-19459556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
204, 12
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr20:20203021-20203327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
186, 128
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr20:20353109-20352803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
95, 23
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr20:31740410-31740110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
196, 22
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr20:34001591-34001280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 132
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr20:34918084-34918380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
207, 75
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr20:35176964-35176668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
72, 39
               

               
Conread position:
               
1-301
               

               
Cow position:
               
chr20:38768648-38768353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 84
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr20:6501604-6501911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
88, 104
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr20:39743119-39743429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
67, 133
               

               
Conread position:
               
1-311
               

               
Cow position:
               
chr20:4205768-4206092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 129
               

               
Conread position:
               
1-311
               

               
Cow position:
               
chr20:15549092-15548776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
82, 67
               

               
Conread position:
               
1-311
               

               
Cow position:
               
chr20:19363557-19363242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
91, 57
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr20:7806757-7806448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 166
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr20:9014543-9014226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 153
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr20:11341000-11340683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
88, 191
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr20:18551168-18551483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
80, 43
               

               
Conread position:
               
1-313
               

               
Cow position:
               
chr20:14572551-14572241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 98
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr20:21928710-21929039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 26
               

               
Conread position:
               
1-338
               

               
Cow position:
               
chr20:33363325-33363665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
156, 70
               

               
Conread position:
               
1-338
               

               
Cow position:
               
chr20:40423285-40422955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
265, 128
               

               
Conread position:
               
1-342
               

               
Cow position:
               
chr20:11741498-11741155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 9
               

               
Conread position:
               
1-343
               

               
Cow position:
               
chr20:33144750-33144400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
1-344
               

               
Cow position:
               
chr20:4756020-4755679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
80, 55
               

               
Conread position:
               
1-345
               

               
Cow position:
               
chr20:7442319-7441983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 85
               

               
Conread position:
               
1-345
               

               
Cow position:
               
chr20:10818419-10818085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 12
               

               
Conread position:
               
1-345
               

               
Cow position:
               
chr20:28296095-28296450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
70, 130
               

               
Conread position:
               
1-345
               

               
Cow position:
               
chr20:31323602-31323942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
33, 113
               

               
Conread position:
               
1-345
               

               
Cow position:
               
chr20:34597303-34596943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
49, 98
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr20:6240724-6240363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 132
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr20:6890510-6890866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
58, 139
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr20:8556469-8556111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 128
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr20:34251873-34251514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 69
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr20:398489-398148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
195, 61
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr20:4945440-4945095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 67
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr20:6096680-6096336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 41
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr20:9536939-9537291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 276
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr20:13829069-13829419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
93, 157
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr20:15566026-15565670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 298
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr20:19751114-19751466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 86
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr20:21345211-21345592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 79
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr20:23065027-23064676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 125
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr20:29805856-29805500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 26
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr20:29844860-29845209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 89
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr20:33532116-33532462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 57
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr20:34098153-34097794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 124
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr20:39517816-39518165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
188, 46
               

               
Conread position:
               
2-163
               

               
Cow position:
               
chr20:24902665-24902497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
33, 133
               

               
Conread position:
               
2-212
               

               
Cow position:
               
chr20:12334188-12334390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
186, 69
               

               
Conread position:
               
2-319
               

               
Cow position:
               
chr20:6423770-6424095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
120, 66
               

               
Conread position:
               
2-341
               

               
Cow position:
               
chr20:14759858-14759514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 109
               

               
Conread position:
               
2-345
               

               
Cow position:
               
chr20:18320989-18320639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
79, 127
               

               
Conread position:
               
2-349
               

               
Cow position:
               
chr20:12996202-12995847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 98
               

               
Conread position:
               
2-349
               

               
Cow position:
               
chr20:35364857-35365201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 74
               

               
Conread position:
               
3-187
               

               
Cow position:
               
chr20:3781619-3781437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
92, 73
               

               
Conread position:
               
3-259
               

               
Cow position:
               
chr20:18185386-18185635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
198, 68
               

               
Conread position:
               
3-309
               

               
Cow position:
               
chr20:22313350-22313042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 44
               

               
Conread position:
               
3-311
               

               
Cow position:
               
chr20:11542476-11542168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
67, 92
               

               
Conread position:
               
3-339
               

               
Cow position:
               
chr20:15235569-15235901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
26, 129
               

               
Conread position:
               
3-345
               

               
Cow position:
               
chr20:34107923-34108260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 38
               

               
Conread position:
               
3-346
               

               
Cow position:
               
chr20:25009836-25009475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
75, 128
               

               
Conread position:
               
3-348
               

               
Cow position:
               
chr20:10200149-10200504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 133
               

               
Conread position:
               
3-349
               

               
Cow position:
               
chr20:14879594-14879948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 126
               

               
Conread position:
               
3-349
               

               
Cow position:
               
chr20:21372123-21372467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
77, 131
               

               
Conread position:
               
4-212
               

               
Cow position:
               
chr20:26679931-26680140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
77, 18
               

               
Conread position:
               
4-212
               

               
Cow position:
               
chr20:28982505-28982712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
73, 123
               

               
Conread position:
               
4-236
               

               
Cow position:
               
chr20:27339874-27340108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 59
               

               
Conread position:
               
4-246
               

               
Cow position:
               
chr20:5078003-5078253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
77, 36
               

               
Conread position:
               
4-280
               

               
Cow position:
               
chr20:14735484-14735758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
4-298
               

               
Cow position:
               
chr20:6903136-6903421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
202, 16
               

               
Conread position:
               
4-298
               

               
Cow position:
               
chr20:24069619-24069913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
174, 20
               

               
Conread position:
               
4-301
               

               
Cow position:
               
chr20:7659406-7659103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
201, 33
               

               
Conread position:
               
4-310
               

               
Cow position:
               
chr20:21714560-21714880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 65
               

               
Conread position:
               
4-313
               

               
Cow position:
               
chr20:24000971-24000674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
191, 52
               

               
Conread position:
               
4-313
               

               
Cow position:
               
chr20:26076892-26077204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
174, 121
               

               
Conread position:
               
4-315
               

               
Cow position:
               
chr20:39325193-39325515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 141
               

               
Conread position:
               
4-343
               

               
Cow position:
               
chr20:35907239-35906897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 86
               

               
Conread position:
               
4-345
               

               
Cow position:
               
chr20:5950825-5950488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
117, 86
               

               
Conread position:
               
4-345
               

               
Cow position:
               
chr20:11482331-11481980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 130
               

               
Conread position:
               
4-345
               

               
Cow position:
               
chr20:28067618-28067269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 121
               

               
Conread position:
               
4-345
               

               
Cow position:
               
chr20:36779923-36779574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
90, 122
               

               
Conread position:
               
4-346
               

               
Cow position:
               
chr20:11038410-11038732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
15, 116
               

               
Conread position:
               
4-348
               

               
Cow position:
               
chr20:581113-580762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 121
               

               
Conread position:
               
4-348
               

               
Cow position:
               
chr20:40511950-40511598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 122
               

               
Conread position:
               
4-349
               

               
Cow position:
               
chr20:6054705-6054350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 64
               

               
Conread position:
               
4-349
               

               
Cow position:
               
chr20:18392433-18392112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
180, 23
               

               
Conread position:
               
4-349
               

               
Cow position:
               
chr20:20967148-20967480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 51
               

               
Conread position:
               
4-349
               

               
Cow position:
               
chr20:20983815-20984151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 66
               

               
Conread position:
               
4-349
               

               
Cow position:
               
chr20:23871008-23870660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 125
               

               
Conread position:
               
4-349
               

               
Cow position:
               
chr20:42469573-42469918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
173, 26
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr20:39675584-39675297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
81, 48
               

               
Conread position:
               
5-322
               

               
Cow position:
               
chr20:20359967-20359651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
191, 8
               

               
Conread position:
               
5-334
               

               
Cow position:
               
chr20:17845768-17846102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 122
               

               
Conread position:
               
5-345
               

               
Cow position:
               
chr20:9923406-9923722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
323, 57
               

               
Conread position:
               
5-345
               

               
Cow position:
               
chr20:34776995-34777335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 80
               

               
Conread position:
               
5-349
               

               
Cow position:
               
chr20:3599581-3599239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 120
               

               
Conread position:
               
5-349
               

               
Cow position:
               
chr20:39398297-39398640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 58
               

               
Conread position:
               
5-349
               

               
Cow position:
               
chr20:40127527-40127184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 89
               

               
Conread position:
               
6-346
               

               
Cow position:
               
chr20:12582137-12581798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
204, 62
               

               
Conread position:
               
6-349
               

               
Cow position:
               
chr20:17251518-17251876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 49
               

               
Conread position:
               
7-204
               

               
Cow position:
               
chr20:37200164-37200365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
86, 56
               

               
Conread position:
               
7-259
               

               
Cow position:
               
chr20:17903971-17904227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 118
               

               
Conread position:
               
7-318
               

               
Cow position:
               
chr20:38123695-38124014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
47, 147
               

               
Conread position:
               
7-345
               

               
Cow position:
               
chr20:9433409-9433742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 51
               

               
Conread position:
               
7-348
               

               
Cow position:
               
chr20:41627534-41627183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
57, 20
               

               
Conread position:
               
7-349
               

               
Cow position:
               
chr20:9412303-9412647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
192, 82
               

               
Conread position:
               
8-345
               

               
Cow position:
               
chr20:36207614-36207969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
72, 123
               

               
Conread position:
               
10-246
               

               
Cow position:
               
chr20:24391794-24392034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
71, 119
               

               
Conread position:
               
10-343
               

               
Cow position:
               
chr20:38578943-38578611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 104
               

               
Conread position:
               
12-209
               

               
Cow position:
               
chr20:34240340-34240546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
12-349
               

               
Cow position:
               
chr20:3141399-3141732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 85
               

               
Conread position:
               
12-349
               

               
Cow position:
               
chr20:14980698-14980347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 6
               

               
Conread position:
               
13-184
               

               
Cow position:
               
chr20:11045495-11045661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
14-236
               

               
Cow position:
               
chr20:17733960-17733736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
14-349
               

               
Cow position:
               
chr20:40781786-40782120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 77
               

               
Conread position:
               
18-212
               

               
Cow position:
               
chr20:37272538-37272728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
53, 28
               

               
Conread position:
               
19-312
               

               
Cow position:
               
chr20:271598-271302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
78, 9
               

               
Conread position:
               
23-210
               

               
Cow position:
               
chr20:3569233-3569055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
108, 30
               

               
Conread position:
               
24-300
               

               
Cow position:
               
chr20:3740172-3739895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
107, 153
               

               
Conread position:
               
27-349
               

               
Cow position:
               
chr20:3321307-3320985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
179, 63
               

               
Conread position:
               
28-300
               

               
Cow position:
               
chr20:7439017-7438742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
168, 25
               

               
Conread position:
               
29-339
               

               
Cow position:
               
chr20:42197160-42197462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
64, 100
               

               
Conread position:
               
32-246
               

               
Cow position:
               
chr20:41403405-41403632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
32-345
               

               
Cow position:
               
chr20:13652521-13652212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 39
               

               
Conread position:
               
33-349
               

               
Cow position:
               
chr20:15312496-15312828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
48, 101
               

               
Conread position:
               
34-275
               

               
Cow position:
               
chr20:283091-282841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
57, 120
               

               
Conread position:
               
35-194
               

               
Cow position:
               
chr20:12048235-12048390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
35-310
               

               
Cow position:
               
chr20:32523307-32523583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
97, 22
               

               
Conread position:
               
36-184
               

               
Cow position:
               
chr20:9701735-9701590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
39-266
               

               
Cow position:
               
chr20:10348593-10348826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
145, 40
               

               
Conread position:
               
39-349
               

               
Cow position:
               
chr20:32988989-32988673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
119, 46
               

               
Conread position:
               
40-349
               

               
Cow position:
               
chr20:15569106-15568790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
39, 94
               

               
Conread position:
               
41-349
               

               
Cow position:
               
chr20:5636325-5636640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 88
               

               
Conread position:
               
42-275
               

               
Cow position:
               
chr20:24727220-24727447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
89, 34
               

               
Conread position:
               
42-334
               

               
Cow position:
               
chr20:21761622-21761918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
89, 133
               

               
Conread position:
               
43-343
               

               
Cow position:
               
chr20:13025761-13025457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 18
               

               
Conread position:
               
46-312
               

               
Cow position:
               
chr20:36010639-36010917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
46-348
               

               
Cow position:
               
chr20:31799353-31799045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
101, 174
               

               
Conread position:
               
49-349
               

               
Cow position:
               
chr20:4334667-4334370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
162, 38
               

               
Conread position:
               
52-184
               

               
Cow position:
               
chr20:9729941-9730073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
32, 74
               

               
Conread position:
               
52-348
               

               
Cow position:
               
chr20:14917156-14917443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
79, 128
               

               
Conread position:
               
52-349
               

               
Cow position:
               
chr20:30710794-30710478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
31, 148
               

               
Conread position:
               
54-346
               

               
Cow position:
               
chr20:9267243-9266951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
41, 72
               

               
Conread position:
               
58-345
               

               
Cow position:
               
chr20:40446191-40446484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
25, 199
               

               
Conread position:
               
60-312
               

               
Cow position:
               
chr20:4892958-4892701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
63, 200
               

               
Conread position:
               
62-344
               

               
Cow position:
               
chr20:22484726-22485013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
69, 193
               

               
Conread position:
               
62-349
               

               
Cow position:
               
chr20:4332004-4332293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
238, 56
               

               
Conread position:
               
63-206
               

               
Cow position:
               
chr20:22721887-22722032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
14, 65
               

               
Conread position:
               
63-312
               

               
Cow position:
               
chr20:8098148-8098407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
63-343
               

               
Cow position:
               
chr20:38847367-38847081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
59, 5
               

               
Conread position:
               
63-346
               

               
Cow position:
               
chr20:20099722-20099444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
121, 16
               

               
Conread position:
               
67-326
               

               
Cow position:
               
chr20:28955828-28955566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
66, 23
               

               
Conread position:
               
67-341
               

               
Cow position:
               
chr20:36040343-36040626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
64, 24
               

               
Conread position:
               
68-344
               

               
Cow position:
               
chr20:17470606-17470876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
66, 126
               

               
Conread position:
               
69-312
               

               
Cow position:
               
chr20:32674337-32674572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
62, 81
               

               
Conread position:
               
72-172
               

               
Cow position:
               
chr20:5633482-5633382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
101
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
79-345
               

               
Cow position:
               
chr20:28594167-28594442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
117, 11
               

               
Conread position:
               
79-345
               

               
Cow position:
               
chr20:36633700-36633967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
127, 187
               

               
Conread position:
               
81-345
               

               
Cow position:
               
chr20:11188920-11188652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
38, 189
               

               
Conread position:
               
82-345
               

               
Cow position:
               
chr20:5385856-5385588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
52, 87
               

               
Conread position:
               
86-348
               

               
Cow position:
               
chr20:11548831-11548566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
118, 27
               

               
Conread position:
               
94-337
               

               
Cow position:
               
chr20:10188173-10188421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
102, 35
               

               
Conread position:
               
94-349
               

               
Cow position:
               
chr20:24711733-24712000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
102, 37
               

               
Conread position:
               
97-312
               

               
Cow position:
               
chr20:15118177-15118397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
34, 94
               

               
Conread position:
               
99-301
               

               
Cow position:
               
chr20:23103123-23103333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
89, 26
               

               
Conread position:
               
99-340
               

               
Cow position:
               
chr20:33439079-33438830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
99-349
               

               
Cow position:
               
chr20:7738323-7738072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
98, 26
               

               
Conread position:
               
100-341
               

               
Cow position:
               
chr20:12430891-12430650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
99, 25
               

               
Conread position:
               
114-312
               

               
Cow position:
               
chr20:33819135-33819343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
114-349
               

               
Cow position:
               
chr20:11008087-11008329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
94, 71
               

               
Conread position:
               
120-300
               

               
Cow position:
               
chr20:35192700-35192881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
121-349
               

               
Cow position:
               
chr20:16491997-16492232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
86, 8
               

               
Conread position:
               
125-344
               

               
Cow position:
               
chr20:16548350-16548124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
130-349
               

               
Cow position:
               
chr20:6248663-6248442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
80, 44
               

               
Conread position:
               
131-322
               

               
Cow position:
               
chr20:23506536-23506339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
135-349
               

               
Cow position:
               
chr20:16941352-16941129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
20, 32
               

               
Conread position:
               
139-348
               

               
Cow position:
               
chr20:39962517-39962733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
39, 51
               

               
Conread position:
               
148-349
               

               
Cow position:
               
chr20:10772154-10772366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
60, 146
               

               
Conread position:
               
157-345
               

               
Cow position:
               
chr20:11359670-11359477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
49, 87
               

               
Conread position:
               
159-349
               

               
Cow position:
               
chr20:40157862-40158059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
44, 0
               
Show alignments to all cow chromosomes.