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Cow genome map

           
Conread name:
           
rpigcf0_018626.y1
        

               
Conread position:
               
1-189
               

               
Cow position:
               
chr3:21341225-21341036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
94, 43
               

               
Conread position:
               
1-191
               

               
Cow position:
               
chr3:59701752-59701936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
132, 75
               

               
Conread position:
               
1-192
               

               
Cow position:
               
chr3:56704798-56704616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
1-194
               

               
Cow position:
               
chr3:79208264-79208068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
80, 165
               

               
Conread position:
               
1-202
               

               
Cow position:
               
chr3:64011078-64010885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
93, 49
               

               
Conread position:
               
1-204
               

               
Cow position:
               
chr3:2483192-2483386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr3:38863852-38864059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
21, 82
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr3:61678430-61678639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
123, 78
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr3:42588088-42588304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr3:73590259-73590052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr3:2903551-2903349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
183, 124
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr3:30417868-30418077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
177, 93
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr3:69417049-69416834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
93, 136
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr3:80082078-80081875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
1-231
               

               
Cow position:
               
chr3:12323804-12324043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
78, 50
               

               
Conread position:
               
1-231
               

               
Cow position:
               
chr3:15661962-15661728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 90
               

               
Conread position:
               
1-233
               

               
Cow position:
               
chr3:11019857-11020093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
80, 55
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chr3:25691488-25691729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
80, 103
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr3:32597189-32596945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
150, 123
               

               
Conread position:
               
1-249
               

               
Cow position:
               
chr3:24305166-24304924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
186, 35
               

               
Conread position:
               
1-249
               

               
Cow position:
               
chr3:77227057-77227316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
78, 128
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chr3:49337469-49337727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
205, 10
               

               
Conread position:
               
1-260
               

               
Cow position:
               
chr3:4031707-4031976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
78, 126
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr3:84000351-84000617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 129
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr3:8147924-8147658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
190, 12
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr3:48530376-48530642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
130, 183
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr3:59514850-59515116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
195, 78
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr3:21081646-21081360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
78, 26
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr3:56637405-56637682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
76, 141
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr3:66375060-66375343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
203, 49
               

               
Conread position:
               
1-289
               

               
Cow position:
               
chr3:63179607-63179888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 78
               

               
Conread position:
               
1-294
               

               
Cow position:
               
chr3:75158104-75158397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
195, 75
               

               
Conread position:
               
1-294
               

               
Cow position:
               
chr3:83816054-83815751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
80, 118
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr3:53588651-53588343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
78, 64
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr3:66610099-66609804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 59
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr3:70895785-70896088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 128
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr3:80818468-80818757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
169, 34
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr3:18854832-18855117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 67
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr3:62826884-62826577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 128
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr3:72776979-72777280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 140
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr3:79592150-79591849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 216
               

               
Conread position:
               
1-305
               

               
Cow position:
               
chr3:78076928-78077232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
80, 128
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr3:16547415-16547715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
79, 152
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr3:61857235-61857555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 287
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr3:79148537-79148236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
88, 179
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr3:77188181-77188489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
177, 89
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr3:30463427-30463120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 124
               

               
Conread position:
               
1-311
               

               
Cow position:
               
chr3:18393645-18393341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 75
               

               
Conread position:
               
1-311
               

               
Cow position:
               
chr3:26065740-26066053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
93, 126
               

               
Conread position:
               
1-311
               

               
Cow position:
               
chr3:72018858-72019169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 78
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr3:15954338-15954031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
197, 86
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr3:31206611-31206930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr3:31419440-31419746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr3:39661709-39661403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
130, 19
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr3:45279196-45279520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
36, 28
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr3:48852227-48851916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
87, 18
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr3:49461198-49460872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
88, 136
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr3:54050280-54049977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
87, 65
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr3:57754745-57754422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 179
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr3:59366286-59366607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
85, 137
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr3:61539535-61539855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
78, 280
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr3:12255219-12255542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
57, 46
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr3:15655413-15655082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
68, 128
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr3:55124539-55124213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 130
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr3:26920636-26920986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 17
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr3:71430473-71430127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 134
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chr3:49678861-49679211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
109, 134
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chr3:61840028-61840354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
202, 63
               

               
Conread position:
               
1-338
               

               
Cow position:
               
chr3:5096942-5097288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 84
               

               
Conread position:
               
1-338
               

               
Cow position:
               
chr3:59798993-59799329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
205, 75
               

               
Conread position:
               
1-340
               

               
Cow position:
               
chr3:68303067-68303397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
67, 148
               

               
Conread position:
               
1-343
               

               
Cow position:
               
chr3:38346940-38347276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 106
               

               
Conread position:
               
1-343
               

               
Cow position:
               
chr3:58969157-58968819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 67
               

               
Conread position:
               
1-344
               

               
Cow position:
               
chr3:17895593-17895935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 57
               

               
Conread position:
               
1-344
               

               
Cow position:
               
chr3:71231145-71231482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 72
               

               
Conread position:
               
1-345
               

               
Cow position:
               
chr3:525093-525434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
185, 75
               

               
Conread position:
               
1-345
               

               
Cow position:
               
chr3:2393227-2392880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 254
               

               
Conread position:
               
1-345
               

               
Cow position:
               
chr3:3985069-3985410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 89
               

               
Conread position:
               
1-345
               

               
Cow position:
               
chr3:26903854-26904198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 124
               

               
Conread position:
               
1-345
               

               
Cow position:
               
chr3:28908456-28908115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 75
               

               
Conread position:
               
1-345
               

               
Cow position:
               
chr3:37599677-37599340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 105
               

               
Conread position:
               
1-345
               

               
Cow position:
               
chr3:51234357-51234008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 83
               

               
Conread position:
               
1-345
               

               
Cow position:
               
chr3:52418704-52419026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
292, 56
               

               
Conread position:
               
1-345
               

               
Cow position:
               
chr3:57763962-57764305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 128
               

               
Conread position:
               
1-345
               

               
Cow position:
               
chr3:64172184-64172528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
57, 52
               

               
Conread position:
               
1-345
               

               
Cow position:
               
chr3:64281197-64280843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 128
               

               
Conread position:
               
1-345
               

               
Cow position:
               
chr3:65236764-65237112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 60
               

               
Conread position:
               
1-345
               

               
Cow position:
               
chr3:66708333-66707979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
150, 124
               

               
Conread position:
               
1-345
               

               
Cow position:
               
chr3:73467358-73467723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
78, 48
               

               
Conread position:
               
1-345
               

               
Cow position:
               
chr3:80581410-80581743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 78
               

               
Conread position:
               
1-345
               

               
Cow position:
               
chr3:82460922-82461267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 62
               

               
Conread position:
               
1-346
               

               
Cow position:
               
chr3:6689730-6690089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
21, 224
               

               
Conread position:
               
1-346
               

               
Cow position:
               
chr3:77365555-77365200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 63
               

               
Conread position:
               
1-346
               

               
Cow position:
               
chr3:79292573-79292917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 90
               

               
Conread position:
               
1-346
               

               
Cow position:
               
chr3:80053795-80053454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 62
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr3:8393085-8393436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 132
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr3:9663448-9663081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
93, 146
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr3:15229080-15228732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 78
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr3:15387950-15388310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
90, 135
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr3:66292439-66292085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 9
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr3:73394855-73395207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 133
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr3:75046131-75045785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
211, 12
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr3:210061-210411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 74
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr3:2506742-2506387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 134
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr3:5101021-5100680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 17
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr3:5365425-5365769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 65
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr3:13302117-13301759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 98
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr3:18066873-18067224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 125
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr3:30179821-30180178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 94
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr3:42423592-42423236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 89
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr3:45881648-45881990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 124
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr3:48252636-48252977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
187, 19
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr3:53046918-53046571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 96
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr3:53150066-53150423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
73, 111
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr3:53270565-53270922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 131
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr3:53384544-53384188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 70
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr3:57624202-57624556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 93
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr3:59208553-59208886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
323, 128
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr3:59596943-59597270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
206, 35
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr3:60597287-60597634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 57
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr3:61278645-61279000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 169
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr3:66901003-66900641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 175
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr3:78946100-78945747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
23, 39
               

               
Conread position:
               
2-177
               

               
Cow position:
               
chr3:65020074-65020249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
92, 124
               

               
Conread position:
               
2-284
               

               
Cow position:
               
chr3:74499964-74500269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
2-300
               

               
Cow position:
               
chr3:17957207-17957509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 25
               

               
Conread position:
               
2-311
               

               
Cow position:
               
chr3:39171744-39171433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 124
               

               
Conread position:
               
2-312
               

               
Cow position:
               
chr3:20129682-20129989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 194
               

               
Conread position:
               
2-312
               

               
Cow position:
               
chr3:79220590-79220912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 187
               

               
Conread position:
               
2-342
               

               
Cow position:
               
chr3:83490816-83491170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 310
               

               
Conread position:
               
2-343
               

               
Cow position:
               
chr3:59630759-59630427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
332, 88
               

               
Conread position:
               
2-344
               

               
Cow position:
               
chr3:23876738-23877087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
196, 77
               

               
Conread position:
               
2-345
               

               
Cow position:
               
chr3:18459780-18459440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
326, 88
               

               
Conread position:
               
2-345
               

               
Cow position:
               
chr3:74119702-74119341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
79, 12
               

               
Conread position:
               
2-349
               

               
Cow position:
               
chr3:13507206-13507560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
71, 11
               

               
Conread position:
               
2-349
               

               
Cow position:
               
chr3:14552618-14552967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 117
               

               
Conread position:
               
2-349
               

               
Cow position:
               
chr3:58540793-58540430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 132
               

               
Conread position:
               
3-170
               

               
Cow position:
               
chr3:36657029-36656863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
3-187
               

               
Cow position:
               
chr3:51609557-51609744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
78, 126
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chr3:45307675-45307872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
73, 126
               

               
Conread position:
               
3-274
               

               
Cow position:
               
chr3:5416490-5416204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
75, 138
               

               
Conread position:
               
3-274
               

               
Cow position:
               
chr3:14625647-14625374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
35, 73
               

               
Conread position:
               
3-280
               

               
Cow position:
               
chr3:81277962-81277676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
78, 126
               

               
Conread position:
               
3-300
               

               
Cow position:
               
chr3:46350400-46350713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
78, 273
               

               
Conread position:
               
3-300
               

               
Cow position:
               
chr3:69750959-69750669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
235, 67
               

               
Conread position:
               
3-319
               

               
Cow position:
               
chr3:73759776-73759456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 32
               

               
Conread position:
               
3-338
               

               
Cow position:
               
chr3:53739449-53739104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 126
               

               
Conread position:
               
3-344
               

               
Cow position:
               
chr3:54782269-54781917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
175, 26
               

               
Conread position:
               
3-344
               

               
Cow position:
               
chr3:59473853-59474209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 76
               

               
Conread position:
               
3-346
               

               
Cow position:
               
chr3:55190010-55189665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
53, 71
               

               
Conread position:
               
3-346
               

               
Cow position:
               
chr3:77271526-77271189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 76
               

               
Conread position:
               
3-348
               

               
Cow position:
               
chr3:33253140-33252798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 190
               

               
Conread position:
               
3-348
               

               
Cow position:
               
chr3:44101723-44102058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 51
               

               
Conread position:
               
3-348
               

               
Cow position:
               
chr3:71497404-71497047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 73
               

               
Conread position:
               
3-349
               

               
Cow position:
               
chr3:12712182-12711823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 131
               

               
Conread position:
               
3-349
               

               
Cow position:
               
chr3:22221093-22221419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
67, 53
               

               
Conread position:
               
3-349
               

               
Cow position:
               
chr3:31771439-31771772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
205, 94
               

               
Conread position:
               
3-349
               

               
Cow position:
               
chr3:82020103-82019747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
77, 145
               

               
Conread position:
               
4-184
               

               
Cow position:
               
chr3:6853759-6853585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
119, 72
               

               
Conread position:
               
4-204
               

               
Cow position:
               
chr3:41367242-41367046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
4-209
               

               
Cow position:
               
chr3:4087424-4087219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 86
               

               
Conread position:
               
4-209
               

               
Cow position:
               
chr3:35283356-35283146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
77, 125
               

               
Conread position:
               
4-210
               

               
Cow position:
               
chr3:45647881-45648078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
4-235
               

               
Cow position:
               
chr3:8604272-8604041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
207, 121
               

               
Conread position:
               
4-243
               

               
Cow position:
               
chr3:28692688-28692444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 68
               

               
Conread position:
               
4-246
               

               
Cow position:
               
chr3:44623156-44622898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
87, 8
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr3:82657343-82657096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
138, 86
               

               
Conread position:
               
4-260
               

               
Cow position:
               
chr3:49731896-49731638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 86
               

               
Conread position:
               
4-269
               

               
Cow position:
               
chr3:49218566-49218303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
98, 38
               

               
Conread position:
               
4-298
               

               
Cow position:
               
chr3:50768420-50768719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
77, 125
               

               
Conread position:
               
4-298
               

               
Cow position:
               
chr3:65800334-65800625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
25, 128
               

               
Conread position:
               
4-300
               

               
Cow position:
               
chr3:79902245-79902538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 194
               

               
Conread position:
               
4-312
               

               
Cow position:
               
chr3:30055704-30055403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 80
               

               
Conread position:
               
4-312
               

               
Cow position:
               
chr3:31298418-31298109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 203
               

               
Conread position:
               
4-315
               

               
Cow position:
               
chr3:67929524-67929203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 30
               

               
Conread position:
               
4-327
               

               
Cow position:
               
chr3:20437904-20437587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 64
               

               
Conread position:
               
4-333
               

               
Cow position:
               
chr3:27546092-27545744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
90, 13
               

               
Conread position:
               
4-339
               

               
Cow position:
               
chr3:20802888-20802549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 179
               

               
Conread position:
               
4-341
               

               
Cow position:
               
chr3:51012791-51012469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
322, 126
               

               
Conread position:
               
4-343
               

               
Cow position:
               
chr3:8733591-8733273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
163, 18
               

               
Conread position:
               
4-344
               

               
Cow position:
               
chr3:17935181-17934851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
201, 68
               

               
Conread position:
               
4-344
               

               
Cow position:
               
chr3:28898481-28898136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 128
               

               
Conread position:
               
4-344
               

               
Cow position:
               
chr3:46900936-46901284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 136
               

               
Conread position:
               
4-344
               

               
Cow position:
               
chr3:57577436-57577783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 104
               

               
Conread position:
               
4-345
               

               
Cow position:
               
chr3:2216101-2216456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
4-345
               

               
Cow position:
               
chr3:8060874-8061214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 66
               

               
Conread position:
               
4-345
               

               
Cow position:
               
chr3:14601972-14601616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 51
               

               
Conread position:
               
4-345
               

               
Cow position:
               
chr3:35299416-35299754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
192, 72
               

               
Conread position:
               
4-345
               

               
Cow position:
               
chr3:55010413-55010077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
48, 36
               

               
Conread position:
               
4-345
               

               
Cow position:
               
chr3:70401644-70401984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 129
               

               
Conread position:
               
4-345
               

               
Cow position:
               
chr3:72390822-72391170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
4-345
               

               
Cow position:
               
chr3:80071858-80072217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
70, 130
               

               
Conread position:
               
4-345
               

               
Cow position:
               
chr3:80564702-80565054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 59
               

               
Conread position:
               
4-346
               

               
Cow position:
               
chr3:38691664-38691317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 93
               

               
Conread position:
               
4-346
               

               
Cow position:
               
chr3:65058443-65058787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 40
               

               
Conread position:
               
4-348
               

               
Cow position:
               
chr3:29891675-29891318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
90, 43
               

               
Conread position:
               
4-348
               

               
Cow position:
               
chr3:59001004-59000666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 75
               

               
Conread position:
               
4-348
               

               
Cow position:
               
chr3:65413534-65413186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 49
               

               
Conread position:
               
4-349
               

               
Cow position:
               
chr3:23408601-23408266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
200, 59
               

               
Conread position:
               
4-349
               

               
Cow position:
               
chr3:29596136-29596482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 86
               

               
Conread position:
               
4-349
               

               
Cow position:
               
chr3:52863442-52863091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 16
               

               
Conread position:
               
4-349
               

               
Cow position:
               
chr3:53790803-53790444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
18, 129
               

               
Conread position:
               
4-349
               

               
Cow position:
               
chr3:55272301-55271953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
181, 75
               

               
Conread position:
               
4-349
               

               
Cow position:
               
chr3:65968896-65969259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
4-349
               

               
Cow position:
               
chr3:71237899-71238245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 36
               

               
Conread position:
               
4-349
               

               
Cow position:
               
chr3:81471359-81471004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 188
               

               
Conread position:
               
5-278
               

               
Cow position:
               
chr3:8716989-8717262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
83, 25
               

               
Conread position:
               
5-279
               

               
Cow position:
               
chr3:9843326-9843609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 123
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr3:54903311-54903606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
83, 201
               

               
Conread position:
               
5-303
               

               
Cow position:
               
chr3:22820312-22820616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
191, 65
               

               
Conread position:
               
5-311
               

               
Cow position:
               
chr3:14633244-14632930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
76, 66
               

               
Conread position:
               
5-338
               

               
Cow position:
               
chr3:5374076-5374409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 96
               

               
Conread position:
               
5-345
               

               
Cow position:
               
chr3:7331374-7331041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
76, 124
               

               
Conread position:
               
5-345
               

               
Cow position:
               
chr3:49482963-49482628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 15
               

               
Conread position:
               
5-345
               

               
Cow position:
               
chr3:67744885-67744540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 125
               

               
Conread position:
               
5-349
               

               
Cow position:
               
chr3:3556287-3556637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 17
               

               
Conread position:
               
5-349
               

               
Cow position:
               
chr3:11254406-11254076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
321, 19
               

               
Conread position:
               
5-349
               

               
Cow position:
               
chr3:11987073-11987421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
198, 80
               

               
Conread position:
               
5-349
               

               
Cow position:
               
chr3:14801494-14801836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
120, 59
               

               
Conread position:
               
5-349
               

               
Cow position:
               
chr3:49650122-49650480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 131
               

               
Conread position:
               
5-349
               

               
Cow position:
               
chr3:56476425-56476774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 74
               

               
Conread position:
               
6-194
               

               
Cow position:
               
chr3:3164752-3164565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
6-194
               

               
Cow position:
               
chr3:23269846-23270028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
6-209
               

               
Cow position:
               
chr3:45312797-45312994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
6-212
               

               
Cow position:
               
chr3:13353101-13353309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
75, 127
               

               
Conread position:
               
6-246
               

               
Cow position:
               
chr3:70333732-70333493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
125, 84
               

               
Conread position:
               
6-298
               

               
Cow position:
               
chr3:33327448-33327749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
145, 119
               

               
Conread position:
               
6-327
               

               
Cow position:
               
chr3:26553968-26553646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
139, 83
               

               
Conread position:
               
6-345
               

               
Cow position:
               
chr3:18686660-18686994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 54
               

               
Conread position:
               
6-345
               

               
Cow position:
               
chr3:55970248-55970594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 125
               

               
Conread position:
               
6-349
               

               
Cow position:
               
chr3:26219317-26218961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
75, 7
               

               
Conread position:
               
6-349
               

               
Cow position:
               
chr3:73708793-73709138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 34
               

               
Conread position:
               
6-349
               

               
Cow position:
               
chr3:82056374-82056027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 252
               

               
Conread position:
               
7-204
               

               
Cow position:
               
chr3:48578586-48578771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
7-241
               

               
Cow position:
               
chr3:52650788-52650545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
76, 120
               

               
Conread position:
               
7-311
               

               
Cow position:
               
chr3:68708259-68707960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
76, 28
               

               
Conread position:
               
7-318
               

               
Cow position:
               
chr3:23092238-23091916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
71, 142
               

               
Conread position:
               
7-334
               

               
Cow position:
               
chr3:56626-56301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 88
               

               
Conread position:
               
7-349
               

               
Cow position:
               
chr3:26970570-26970905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 120
               

               
Conread position:
               
8-265
               

               
Cow position:
               
chr3:7678417-7678666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
160, 71
               

               
Conread position:
               
8-275
               

               
Cow position:
               
chr3:41328201-41328458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
195, 72
               

               
Conread position:
               
8-349
               

               
Cow position:
               
chr3:4049956-4050285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
190, 44
               

               
Conread position:
               
9-312
               

               
Cow position:
               
chr3:5045063-5044759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 202
               

               
Conread position:
               
10-194
               

               
Cow position:
               
chr3:61361150-61361336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
30, 44
               

               
Conread position:
               
10-349
               

               
Cow position:
               
chr3:29360390-29360059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
60, 30
               

               
Conread position:
               
11-345
               

               
Cow position:
               
chr3:52652325-52651992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 83
               

               
Conread position:
               
12-212
               

               
Cow position:
               
chr3:15752878-15752687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
12-349
               

               
Cow position:
               
chr3:70334952-70334603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 25
               

               
Conread position:
               
13-322
               

               
Cow position:
               
chr3:15685167-15684858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
16, 116
               

               
Conread position:
               
14-212
               

               
Cow position:
               
chr3:44932260-44932459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
67, 115
               

               
Conread position:
               
14-273
               

               
Cow position:
               
chr3:15052193-15051933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
182, 52
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr3:55947327-55947621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
67, 285
               

               
Conread position:
               
14-345
               

               
Cow position:
               
chr3:58767031-58767351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
185, 61
               

               
Conread position:
               
15-349
               

               
Cow position:
               
chr3:8393692-8394035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
190, 75
               

               
Conread position:
               
16-210
               

               
Cow position:
               
chr3:55836075-55835879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
65, 113
               

               
Conread position:
               
16-280
               

               
Cow position:
               
chr3:83201774-83201502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
65, 113
               

               
Conread position:
               
16-311
               

               
Cow position:
               
chr3:23445136-23444835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 69
               

               
Conread position:
               
24-311
               

               
Cow position:
               
chr3:34937602-34937897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
53, 109
               

               
Conread position:
               
24-349
               

               
Cow position:
               
chr3:67930416-67930093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
12, 43
               

               
Conread position:
               
25-192
               

               
Cow position:
               
chr3:23215821-23215644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
26-176
               

               
Cow position:
               
chr3:78067374-78067221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
52, 108
               

               
Conread position:
               
27-195
               

               
Cow position:
               
chr3:29334749-29334580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
56, 105
               

               
Conread position:
               
27-311
               

               
Cow position:
               
chr3:31047184-31046899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
180, 20
               

               
Conread position:
               
27-345
               

               
Cow position:
               
chr3:11711718-11712043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 13
               

               
Conread position:
               
27-345
               

               
Cow position:
               
chr3:17447843-17447527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
206, 82
               

               
Conread position:
               
28-204
               

               
Cow position:
               
chr3:15192329-15192505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
7, 151
               

               
Conread position:
               
29-348
               

               
Cow position:
               
chr3:17134106-17134425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
118, 65
               

               
Conread position:
               
30-298
               

               
Cow position:
               
chr3:22888148-22887889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
101, 46
               

               
Conread position:
               
30-312
               

               
Cow position:
               
chr3:21547334-21547047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
51, 137
               

               
Conread position:
               
30-349
               

               
Cow position:
               
chr3:27940360-27940051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
298, 95
               

               
Conread position:
               
31-311
               

               
Cow position:
               
chr3:68881346-68881068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
50, 7
               

               
Conread position:
               
31-349
               

               
Cow position:
               
chr3:78092740-78092420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
50, 9
               

               
Conread position:
               
33-335
               

               
Cow position:
               
chr3:76015070-76015369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
145, 43
               

               
Conread position:
               
33-349
               

               
Cow position:
               
chr3:59621865-59621556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
175, 14
               

               
Conread position:
               
34-340
               

               
Cow position:
               
chr3:68146064-68145765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
162, 42
               

               
Conread position:
               
36-345
               

               
Cow position:
               
chr3:53240047-53240344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
204, 20
               

               
Conread position:
               
36-348
               

               
Cow position:
               
chr3:26960821-26960497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
45, 100
               

               
Conread position:
               
37-164
               

               
Cow position:
               
chr3:22734500-22734375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
37-249
               

               
Cow position:
               
chr3:21051063-21050846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
156, 32
               

               
Conread position:
               
37-274
               

               
Cow position:
               
chr3:42367724-42367497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
37-301
               

               
Cow position:
               
chr3:56301573-56301315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
44, 96
               

               
Conread position:
               
39-349
               

               
Cow position:
               
chr3:60265459-60265162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
119, 49
               

               
Conread position:
               
40-298
               

               
Cow position:
               
chr3:2198660-2198923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
110, 85
               

               
Conread position:
               
42-279
               

               
Cow position:
               
chr3:15859891-15859644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
39, 87
               

               
Conread position:
               
42-349
               

               
Cow position:
               
chr3:45211075-45211393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
45-349
               

               
Cow position:
               
chr3:46006248-46005930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
34, 90
               

               
Conread position:
               
46-291
               

               
Cow position:
               
chr3:35005561-35005809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
48, 82
               

               
Conread position:
               
46-300
               

               
Cow position:
               
chr3:4319494-4319753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
41, 83
               

               
Conread position:
               
46-302
               

               
Cow position:
               
chr3:15672360-15672110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
85, 129
               

               
Conread position:
               
46-345
               

               
Cow position:
               
chr3:63269013-63269310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 11
               

               
Conread position:
               
47-300
               

               
Cow position:
               
chr3:76713537-76713283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
159, 32
               

               
Conread position:
               
47-340
               

               
Cow position:
               
chr3:78896433-78896729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
14, 65
               

               
Conread position:
               
48-246
               

               
Cow position:
               
chr3:25059859-25060068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
33, 80
               

               
Conread position:
               
48-284
               

               
Cow position:
               
chr3:39328186-39328426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
148, 42
               

               
Conread position:
               
48-312
               

               
Cow position:
               
chr3:74878804-74878535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 49
               

               
Conread position:
               
48-345
               

               
Cow position:
               
chr3:20842074-20841785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 86
               

               
Conread position:
               
50-300
               

               
Cow position:
               
chr3:79825127-79824878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
77, 18
               

               
Conread position:
               
52-349
               

               
Cow position:
               
chr3:36375758-36375448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
29, 119
               

               
Conread position:
               
55-300
               

               
Cow position:
               
chr3:83727458-83727209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
26, 99
               

               
Conread position:
               
57-349
               

               
Cow position:
               
chr3:55712220-55712532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
57-349
               

               
Cow position:
               
chr3:57760293-57760590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 68
               

               
Conread position:
               
59-312
               

               
Cow position:
               
chr3:83798043-83797780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
59-334
               

               
Cow position:
               
chr3:67520379-67520090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
58, 38
               

               
Conread position:
               
62-298
               

               
Cow position:
               
chr3:7940756-7940517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
134, 63
               

               
Conread position:
               
63-317
               

               
Cow position:
               
chr3:8591556-8591313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
62, 8
               

               
Conread position:
               
63-333
               

               
Cow position:
               
chr3:3637988-3638253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
145, 5
               

               
Conread position:
               
63-344
               

               
Cow position:
               
chr3:38828568-38828844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
40, 5
               

               
Conread position:
               
63-345
               

               
Cow position:
               
chr3:27697177-27696890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
133, 5
               

               
Conread position:
               
64-345
               

               
Cow position:
               
chr3:49791011-49790724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
27, 11
               

               
Conread position:
               
68-230
               

               
Cow position:
               
chr3:83691921-83691752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
68-345
               

               
Cow position:
               
chr3:66884135-66883856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
128, 64
               

               
Conread position:
               
68-348
               

               
Cow position:
               
chr3:53875953-53875674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
140, 57
               

               
Conread position:
               
68-348
               

               
Cow position:
               
chr3:59884267-59883978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
11, 31
               

               
Conread position:
               
69-312
               

               
Cow position:
               
chr3:13890274-13890531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
72-312
               

               
Cow position:
               
chr3:59034843-59035094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
72-343
               

               
Cow position:
               
chr3:34669918-34669647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 58
               

               
Conread position:
               
73-300
               

               
Cow position:
               
chr3:55819558-55819800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
73-312
               

               
Cow position:
               
chr3:55434142-55434383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
58, 38
               

               
Conread position:
               
75-349
               

               
Cow position:
               
chr3:19198800-19199077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
111, 54
               

               
Conread position:
               
76-344
               

               
Cow position:
               
chr3:75687625-75687351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
120, 56
               

               
Conread position:
               
76-349
               

               
Cow position:
               
chr3:76268166-76267883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
55, 18
               

               
Conread position:
               
79-300
               

               
Cow position:
               
chr3:54374044-54373818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
23, 54
               

               
Conread position:
               
79-300
               

               
Cow position:
               
chr3:79092578-79092350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
79-340
               

               
Cow position:
               
chr3:74502505-74502242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
79-344
               

               
Cow position:
               
chr3:15751905-15751627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
117, 51
               

               
Conread position:
               
79-344
               

               
Cow position:
               
chr3:53318220-53318487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
129, 53
               

               
Conread position:
               
79-349
               

               
Cow position:
               
chr3:7661667-7661944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
112, 192
               

               
Conread position:
               
81-338
               

               
Cow position:
               
chr3:26981883-26982138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
83-310
               

               
Cow position:
               
chr3:81359292-81359055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
39, 111
               

               
Conread position:
               
83-344
               

               
Cow position:
               
chr3:70762302-70762036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
131, 42
               

               
Conread position:
               
84-307
               

               
Cow position:
               
chr3:3913629-3913393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
84-312
               

               
Cow position:
               
chr3:81507290-81507057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
47, 83
               

               
Conread position:
               
85-338
               

               
Cow position:
               
chr3:62046485-62046745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
121, 40
               

               
Conread position:
               
90-345
               

               
Cow position:
               
chr3:48810809-48810557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
113, 35
               

               
Conread position:
               
91-310
               

               
Cow position:
               
chr3:32787289-32787512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
34, 57
               

               
Conread position:
               
91-344
               

               
Cow position:
               
chr3:23920601-23920342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
109, 40
               

               
Conread position:
               
91-349
               

               
Cow position:
               
chr3:24616008-24615759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
94, 30
               

               
Conread position:
               
93-349
               

               
Cow position:
               
chr3:24935202-24935456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
120, 11
               

               
Conread position:
               
94-267
               

               
Cow position:
               
chr3:23037798-23037611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
94-345
               

               
Cow position:
               
chr3:26874422-26874678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
44, 12
               

               
Conread position:
               
94-345
               

               
Cow position:
               
chr3:54100891-54100638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
18, 37
               

               
Conread position:
               
95-300
               

               
Cow position:
               
chr3:26489252-26489038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
95-345
               

               
Cow position:
               
chr3:30222018-30222279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
99-246
               

               
Cow position:
               
chr3:15231867-15232019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
106, 15
               

               
Conread position:
               
99-346
               

               
Cow position:
               
chr3:12978780-12978528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
95, 33
               

               
Conread position:
               
100-312
               

               
Cow position:
               
chr3:42671377-42671583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
31, 50
               

               
Conread position:
               
101-315
               

               
Cow position:
               
chr3:41129560-41129768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
30, 49
               

               
Conread position:
               
101-349
               

               
Cow position:
               
chr3:53508460-53508703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
105, 24
               

               
Conread position:
               
102-349
               

               
Cow position:
               
chr3:58973143-58973387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
99, 23
               

               
Conread position:
               
104-345
               

               
Cow position:
               
chr3:77581950-77582194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
92, 26
               

               
Conread position:
               
104-349
               

               
Cow position:
               
chr3:15153534-15153783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
84, 21
               

               
Conread position:
               
108-345
               

               
Cow position:
               
chr3:19793747-19793503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
58, 197
               

               
Conread position:
               
108-346
               

               
Cow position:
               
chr3:2648668-2648421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
20, 61
               

               
Conread position:
               
108-348
               

               
Cow position:
               
chr3:29946240-29946477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
109-334
               

               
Cow position:
               
chr3:46541981-46541753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
99, 20
               

               
Conread position:
               
114-345
               

               
Cow position:
               
chr3:5366622-5366856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
91, 11
               

               
Conread position:
               
116-345
               

               
Cow position:
               
chr3:60389619-60389852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
90, 72
               

               
Conread position:
               
118-344
               

               
Cow position:
               
chr3:22509876-22510112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
15, 119
               

               
Conread position:
               
121-346
               

               
Cow position:
               
chr3:59040425-59040657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
62, 12
               

               
Conread position:
               
121-349
               

               
Cow position:
               
chr3:73820513-73820279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
75, 58
               

               
Conread position:
               
122-345
               

               
Cow position:
               
chr3:3889709-3889481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
62, 113
               

               
Conread position:
               
123-345
               

               
Cow position:
               
chr3:32457060-32457281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
81, 7
               

               
Conread position:
               
124-348
               

               
Cow position:
               
chr3:78093525-78093297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
125-348
               

               
Cow position:
               
chr3:15443869-15443638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
83, 137
               

               
Conread position:
               
130-349
               

               
Cow position:
               
chr3:17058674-17058454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
93, 8
               

               
Conread position:
               
130-349
               

               
Cow position:
               
chr3:76024385-76024595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
133, 46
               

               
Conread position:
               
131-345
               

               
Cow position:
               
chr3:74846844-74846621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
8, 49
               

               
Conread position:
               
131-346
               

               
Cow position:
               
chr3:84175959-84175734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
133-349
               

               
Cow position:
               
chr3:53704098-53703872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
16, 44
               

               
Conread position:
               
135-348
               

               
Cow position:
               
chr3:3649347-3649133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
69, 80
               

               
Conread position:
               
136-345
               

               
Cow position:
               
chr3:73298958-73299166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
74, 133
               

               
Conread position:
               
141-349
               

               
Cow position:
               
chr3:48468059-48468265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
37, 46
               

               
Conread position:
               
177-349
               

               
Cow position:
               
chr3:23667535-23667712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
194-345
               

               
Cow position:
               
chr3:11292314-11292160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
196-349
               

               
Cow position:
               
chr3:69650948-69650797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
132, 16
               

               
Conread position:
               
197-349
               

               
Cow position:
               
chr3:27976587-27976432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
197-349
               

               
Cow position:
               
chr3:56949146-56948996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
131, 15
               

               
Conread position:
               
199-349
               

               
Cow position:
               
chr3:64373217-64373064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
207-349
               

               
Cow position:
               
chr3:57877515-57877658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
121, 0
               
Show alignments to all cow chromosomes.