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Cow genome map

           
Conread name:
           
rpigcf0_020330.y1
        

               
Conread position:
               
1-145
               

               
Cow position:
               
chr1:81579518-81579662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
18, 82
               

               
Conread position:
               
1-159
               

               
Cow position:
               
chr1:58439291-58439140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
22, 33
               

               
Conread position:
               
1-162
               

               
Cow position:
               
chr1:51983348-51983497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
1-193
               

               
Cow position:
               
chr1:2055120-2054925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
28, 94
               

               
Conread position:
               
1-199
               

               
Cow position:
               
chr1:86325856-86325655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
18, 115
               

               
Conread position:
               
1-200
               

               
Cow position:
               
chr1:36613520-36613321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
22, 94
               

               
Conread position:
               
1-200
               

               
Cow position:
               
chr1:67290621-67290820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
138, 109
               

               
Conread position:
               
1-200
               

               
Cow position:
               
chr1:94226793-94226598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
22, 80
               

               
Conread position:
               
1-202
               

               
Cow position:
               
chr1:82936827-82936636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
18, 94
               

               
Conread position:
               
1-208
               

               
Cow position:
               
chr1:63596305-63596094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
17, 135
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:34685950-34686155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
21, 33
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:102266514-102266305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
17, 84
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr1:85028716-85028918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
192, 34
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chr1:43352894-43352689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
127, 14
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chr1:72304616-72304409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
22, 94
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chr1:95499740-95499526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
188, 130
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr1:8349556-8349346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
17, 94
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr1:18937079-18936864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
20, 196
               

               
Conread position:
               
1-218
               

               
Cow position:
               
chr1:10778329-10778537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
165, 86
               

               
Conread position:
               
1-218
               

               
Cow position:
               
chr1:54258322-54258535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
22, 92
               

               
Conread position:
               
1-219
               

               
Cow position:
               
chr1:84255509-84255736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
21, 171
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chr1:31399471-31399250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
22, 143
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chr1:68818041-68817825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 22
               

               
Conread position:
               
1-221
               

               
Cow position:
               
chr1:1991673-1991445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
1-221
               

               
Cow position:
               
chr1:24655715-24655937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
22, 31
               

               
Conread position:
               
1-221
               

               
Cow position:
               
chr1:29935626-29935412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
1-221
               

               
Cow position:
               
chr1:84116157-84116371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
142, 72
               

               
Conread position:
               
1-221
               

               
Cow position:
               
chr1:95215431-95215206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr1:1981355-1981139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
22, 101
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr1:33811689-33811905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
22, 81
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr1:69539454-69539674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
165, 56
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr1:77099785-77099575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
28, 94
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr1:21835703-21835921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
21, 82
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr1:55135591-55135809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
22, 33
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr1:81868972-81868750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
18, 98
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr1:85774214-85774431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
17, 116
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr1:100421598-100421809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
22, 73
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr1:68854930-68855141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
166, 81
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr1:78857567-78857342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 85
               

               
Conread position:
               
1-229
               

               
Cow position:
               
chr1:50931214-50930992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
17, 70
               

               
Conread position:
               
1-229
               

               
Cow position:
               
chr1:51628747-51628515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
18, 166
               

               
Conread position:
               
1-229
               

               
Cow position:
               
chr1:85361610-85361843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
20, 179
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chr1:31190349-31190123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
22, 40
               

               
Conread position:
               
1-233
               

               
Cow position:
               
chr1:81913397-81913166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
22, 149
               

               
Conread position:
               
1-234
               

               
Cow position:
               
chr1:45555117-45555351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
44, 24
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chr1:13548235-13547995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
22, 101
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr1:19998280-19998050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
188, 101
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr1:64251294-64251063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
169, 22
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr1:79844224-79844458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 99
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr1:22826924-22827148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
22, 100
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr1:98562915-98563153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 53
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr1:6077649-6077894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
18, 213
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr1:20384866-20384626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 100
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr1:41056439-41056671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 53
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr1:42874192-42873959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 96
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr1:48105679-48105437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 103
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr1:56225232-56225462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 14
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr1:61564546-61564792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr1:68619182-68618937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 45
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr1:197247-197010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
20, 33
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr1:3061839-3061589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
21, 127
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr1:3456627-3456865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 70
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr1:3661301-3661069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
17, 84
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr1:7350293-7350543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr1:41004612-41004365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 42
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr1:50634651-50634402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr1:53458460-53458693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
22, 92
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr1:61742213-61741972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
22, 82
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr1:61884670-61884908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
22, 169
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr1:70538358-70538606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 232
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr1:70828669-70828898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
21, 34
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr1:71253800-71253558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
21, 100
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr1:78810791-78811034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 227
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr1:81569281-81569033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
11, 207
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr1:81613140-81613384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 205
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr1:88652386-88652626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 95
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr1:89349732-89349960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
22, 80
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr1:89510177-89509926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 160
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr1:95687346-95687105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
139, 23
               

               
Conread position:
               
2-152
               

               
Cow position:
               
chr1:56618921-56618773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
27, 19
               

               
Conread position:
               
2-152
               

               
Cow position:
               
chr1:99105126-99104981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
2-213
               

               
Cow position:
               
chr1:33331317-33331121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
165, 37
               

               
Conread position:
               
2-220
               

               
Cow position:
               
chr1:67821454-67821237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
21, 81
               

               
Conread position:
               
2-222
               

               
Cow position:
               
chr1:39510286-39510079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
17, 37
               

               
Conread position:
               
2-234
               

               
Cow position:
               
chr1:44164835-44165071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
168, 0
               

               
Conread position:
               
3-148
               

               
Cow position:
               
chr1:43649777-43649644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
3-197
               

               
Cow position:
               
chr1:19516649-19516454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
20, 70
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chr1:100800114-100800313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
163, 32
               

               
Conread position:
               
3-216
               

               
Cow position:
               
chr1:1956572-1956364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
20, 90
               

               
Conread position:
               
3-220
               

               
Cow position:
               
chr1:5135934-5135730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
83, 96
               

               
Conread position:
               
3-220
               

               
Cow position:
               
chr1:69540040-69540273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
3-220
               

               
Cow position:
               
chr1:73960457-73960679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
3-222
               

               
Cow position:
               
chr1:69264579-69264787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
143, 79
               

               
Conread position:
               
3-223
               

               
Cow position:
               
chr1:87216218-87216436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
22, 67
               

               
Conread position:
               
3-229
               

               
Cow position:
               
chr1:92370602-92370377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
141, 13
               

               
Conread position:
               
3-234
               

               
Cow position:
               
chr1:62964036-62964262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 79
               

               
Conread position:
               
3-238
               

               
Cow position:
               
chr1:101634458-101634694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 85
               

               
Conread position:
               
3-240
               

               
Cow position:
               
chr1:91142397-91142165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
142, 20
               

               
Conread position:
               
3-244
               

               
Cow position:
               
chr1:24133298-24133065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 81
               

               
Conread position:
               
3-244
               

               
Cow position:
               
chr1:25383419-25383664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 78
               

               
Conread position:
               
3-244
               

               
Cow position:
               
chr1:52039394-52039633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 93
               

               
Conread position:
               
3-244
               

               
Cow position:
               
chr1:57900984-57900746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 94
               

               
Conread position:
               
3-244
               

               
Cow position:
               
chr1:80899865-80900115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
130, 237
               

               
Conread position:
               
3-244
               

               
Cow position:
               
chr1:85162790-85162552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
164, 179
               

               
Conread position:
               
4-163
               

               
Cow position:
               
chr1:62996253-62996408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
4-222
               

               
Cow position:
               
chr1:41696815-41697034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 19
               

               
Conread position:
               
4-244
               

               
Cow position:
               
chr1:19482316-19482086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
19, 96
               

               
Conread position:
               
5-227
               

               
Cow position:
               
chr1:62732334-62732557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
18, 68
               

               
Conread position:
               
5-244
               

               
Cow position:
               
chr1:94403975-94404209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
24, 85
               

               
Conread position:
               
6-195
               

               
Cow position:
               
chr1:30504231-30504420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 116
               

               
Conread position:
               
6-199
               

               
Cow position:
               
chr1:25281916-25281729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
17, 84
               

               
Conread position:
               
6-221
               

               
Cow position:
               
chr1:70434752-70434973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
17, 186
               

               
Conread position:
               
7-222
               

               
Cow position:
               
chr1:74822212-74822425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 164
               

               
Conread position:
               
7-243
               

               
Cow position:
               
chr1:1403709-1403487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
31, 24
               

               
Conread position:
               
7-244
               

               
Cow position:
               
chr1:70380385-70380145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
11, 74
               

               
Conread position:
               
8-173
               

               
Cow position:
               
chr1:99222069-99221902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
15, 99
               

               
Conread position:
               
9-146
               

               
Cow position:
               
chr1:71715937-71716075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
10-222
               

               
Cow position:
               
chr1:42968554-42968339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
8, 91
               

               
Conread position:
               
11-225
               

               
Cow position:
               
chr1:25886310-25886099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
13, 100
               

               
Conread position:
               
11-244
               

               
Cow position:
               
chr1:98551478-98551715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 49
               

               
Conread position:
               
13-211
               

               
Cow position:
               
chr1:20799639-20799850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
10, 157
               

               
Conread position:
               
14-244
               

               
Cow position:
               
chr1:43389280-43389053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
5, 76
               

               
Conread position:
               
15-244
               

               
Cow position:
               
chr1:43448055-43447833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
6, 79
               

               
Conread position:
               
17-211
               

               
Cow position:
               
chr1:53397759-53397950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 161
               

               
Conread position:
               
17-221
               

               
Cow position:
               
chr1:62919948-62920139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
149, 42
               

               
Conread position:
               
17-232
               

               
Cow position:
               
chr1:98360637-98360413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
17-236
               

               
Cow position:
               
chr1:89381050-89381264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
149, 51
               

               
Conread position:
               
17-241
               

               
Cow position:
               
chr1:96136259-96136474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
17-244
               

               
Cow position:
               
chr1:55705482-55705251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
19-225
               

               
Cow position:
               
chr1:67008964-67008765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
152, 34
               

               
Conread position:
               
20-244
               

               
Cow position:
               
chr1:87072479-87072694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
148, 82
               

               
Conread position:
               
24-244
               

               
Cow position:
               
chr1:93043804-93044016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
26-244
               

               
Cow position:
               
chr1:53671969-53671742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
73, 125
               

               
Conread position:
               
27-223
               

               
Cow position:
               
chr1:49433483-49433284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
117, 87
               

               
Conread position:
               
28-221
               

               
Cow position:
               
chr1:62036581-62036776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
9, 107
               

               
Conread position:
               
35-173
               

               
Cow position:
               
chr1:99792601-99792740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
35-244
               

               
Cow position:
               
chr1:3167283-3167078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
135, 154
               

               
Conread position:
               
36-212
               

               
Cow position:
               
chr1:62291895-62291725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
130, 46
               

               
Conread position:
               
41-176
               

               
Cow position:
               
chr1:21500654-21500520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
129, 9
               

               
Conread position:
               
42-244
               

               
Cow position:
               
chr1:68862832-68863030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
128, 40
               

               
Conread position:
               
43-222
               

               
Cow position:
               
chr1:101207630-101207799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
127, 28
               

               
Conread position:
               
43-225
               

               
Cow position:
               
chr1:4414410-4414229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
127, 39
               

               
Conread position:
               
44-230
               

               
Cow position:
               
chr1:89438137-89437953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
123, 54
               

               
Conread position:
               
44-244
               

               
Cow position:
               
chr1:5597400-5597213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
46-217
               

               
Cow position:
               
chr1:81470929-81471103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
50-244
               

               
Cow position:
               
chr1:89497770-89497952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
171, 30
               

               
Conread position:
               
55-242
               

               
Cow position:
               
chr1:89082917-89083106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
115, 45
               

               
Conread position:
               
59-204
               

               
Cow position:
               
chr1:57097178-57097323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
81, 69
               

               
Conread position:
               
59-241
               

               
Cow position:
               
chr1:102113295-102113110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
60-244
               

               
Cow position:
               
chr1:84910816-84910636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
129, 48
               

               
Conread position:
               
61-222
               

               
Cow position:
               
chr1:68763866-68763708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
109, 33
               

               
Conread position:
               
61-244
               

               
Cow position:
               
chr1:99039537-99039360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
106, 35
               

               
Conread position:
               
63-220
               

               
Cow position:
               
chr1:24445811-24445652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
104, 19
               

               
Conread position:
               
65-220
               

               
Cow position:
               
chr1:18780518-18780364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
37, 14
               

               
Conread position:
               
71-225
               

               
Cow position:
               
chr1:91875085-91874930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
96, 35
               

               
Conread position:
               
76-220
               

               
Cow position:
               
chr1:87211772-87211917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
90, 73
               

               
Conread position:
               
82-221
               

               
Cow position:
               
chr1:24581416-24581555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
111, 127
               

               
Conread position:
               
83-220
               

               
Cow position:
               
chr1:86110898-86110757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
84-219
               

               
Cow position:
               
chr1:31960059-31960198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
87-243
               

               
Cow position:
               
chr1:3882627-3882465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
87-244
               

               
Cow position:
               
chr1:85647944-85647785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
16, 11
               

               
Conread position:
               
88-244
               

               
Cow position:
               
chr1:38401631-38401793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
89-222
               

               
Cow position:
               
chr1:80311310-80311441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
78, 97
               

               
Conread position:
               
90-221
               

               
Cow position:
               
chr1:42175565-42175698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
75, 129
               

               
Conread position:
               
97-240
               

               
Cow position:
               
chr1:64572361-64572506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
70, 130
               

               
Conread position:
               
100-222
               

               
Cow position:
               
chr1:101834675-101834797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
102-244
               

               
Cow position:
               
chr1:91023615-91023470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
105-244
               

               
Cow position:
               
chr1:87440324-87440463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
61, 78
               

               
Conread position:
               
110-244
               

               
Cow position:
               
chr1:85301279-85301414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
111-244
               

               
Cow position:
               
chr1:89230366-89230234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
129-225
               

               
Cow position:
               
chr1:50907516-50907417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
130-244
               

               
Cow position:
               
chr1:9437428-9437311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
37, 0
               
Show alignments to all cow chromosomes.