Cow genome map

Conread name: rpigcf0_020330.y1

Conread position: 1-152
Cow position:
Alignm length: 152
Alignm identity: 130
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 1-163
Cow position:
Alignm length: 163
Alignm identity: 139
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 93, 0

Conread position: 1-174
Cow position:
Alignm length: 176
Alignm identity: 141
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 18, 82

Conread position: 1-178
Cow position:
Alignm length: 180
Alignm identity: 150
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 1-193
Cow position:
Alignm length: 196
Alignm identity: 153
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 22, 95

Conread position: 1-199
Cow position:
Alignm length: 204
Alignm identity: 165
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 22, 64

Conread position: 1-200
Cow position:
Alignm length: 203
Alignm identity: 165
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 22

Conread position: 1-206
Cow position:
Alignm length: 209
Alignm identity: 153
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 165, 22

Conread position: 1-208
Cow position:
Alignm length: 211
Alignm identity: 166
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 168, 38

Conread position: 1-211
Cow position:
Alignm length: 212
Alignm identity: 164
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 144, 21

Conread position: 1-214
Cow position:
Alignm length: 218
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 1-214
Cow position:
Alignm length: 224
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 209

Conread position: 1-216
Cow position:
Alignm length: 217
Alignm identity: 158
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 22, 82

Conread position: 1-217
Cow position:
Alignm length: 218
Alignm identity: 167
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 169, 81

Conread position: 1-217
Cow position:
Alignm length: 223
Alignm identity: 171
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 17, 165

Conread position: 1-219
Cow position:
Alignm length: 221
Alignm identity: 171
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 20, 82

Conread position: 1-219
Cow position:
Alignm length: 224
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 93

Conread position: 1-220
Cow position:
Alignm length: 223
Alignm identity: 172
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 165, 109

Conread position: 1-221
Cow position:
Alignm length: 226
Alignm identity: 174
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 19, 101

Conread position: 1-221
Cow position:
Alignm length: 223
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 191

Conread position: 1-221
Cow position:
Alignm length: 227
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 40

Conread position: 1-221
Cow position:
Alignm length: 225
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 0

Conread position: 1-221
Cow position:
Alignm length: 223
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 82

Conread position: 1-222
Cow position:
Alignm length: 223
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 62

Conread position: 1-223
Cow position:
Alignm length: 226
Alignm identity: 179
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 22, 67

Conread position: 1-223
Cow position:
Alignm length: 230
Alignm identity: 169
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 23, 82

Conread position: 1-225
Cow position:
Alignm length: 226
Alignm identity: 158
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 73, 58

Conread position: 1-225
Cow position:
Alignm length: 229
Alignm identity: 170
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 22, 79

Conread position: 1-226
Cow position:
Alignm length: 228
Alignm identity: 172
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 20, 0

Conread position: 1-228
Cow position:
Alignm length: 231
Alignm identity: 170
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 22, 12

Conread position: 1-228
Cow position:
Alignm length: 233
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 43

Conread position: 1-232
Cow position:
Alignm length: 236
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 22

Conread position: 1-232
Cow position:
Alignm length: 245
Alignm identity: 181
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 17, 213

Conread position: 1-232
Cow position:
Alignm length: 237
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 129

Conread position: 1-233
Cow position:
Alignm length: 236
Alignm identity: 172
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 165, 13

Conread position: 1-233
Cow position:
Alignm length: 239
Alignm identity: 181
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 19, 109

Conread position: 1-236
Cow position:
Alignm length: 243
Alignm identity: 172
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 25, 102

Conread position: 1-239
Cow position:
Alignm length: 244
Alignm identity: 178
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 17, 143

Conread position: 1-240
Cow position:
Alignm length: 246
Alignm identity: 189
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 22, 82

Conread position: 1-240
Cow position:
Alignm length: 241
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 106

Conread position: 1-242
Cow position:
Alignm length: 245
Alignm identity: 170
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 20, 164

Conread position: 1-242
Cow position:
Alignm length: 249
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 96

Conread position: 1-242
Cow position:
Alignm length: 246
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 153

Conread position: 1-243
Cow position:
Alignm length: 245
Alignm identity: 184
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 17, 9

Conread position: 1-243
Cow position:
Alignm length: 245
Alignm identity: 175
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 187, 154

Conread position: 1-243
Cow position:
Alignm length: 247
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 0

Conread position: 1-243
Cow position:
Alignm length: 252
Alignm identity: 191
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 22, 106

Conread position: 1-243
Cow position:
Alignm length: 246
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 229

Conread position: 1-244
Cow position:
Alignm length: 245
Alignm identity: 186
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 230, 22

Conread position: 1-244
Cow position:
Alignm length: 252
Alignm identity: 189
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 22, 87

Conread position: 1-244
Cow position:
Alignm length: 250
Alignm identity: 184
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 17, 97

Conread position: 1-244
Cow position:
Alignm length: 249
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 228

Conread position: 1-244
Cow position:
Alignm length: 246
Alignm identity: 185
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 22, 82

Conread position: 1-244
Cow position:
Alignm length: 245
Alignm identity: 175
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 37, 22

Conread position: 1-244
Cow position:
Alignm length: 251
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 147

Conread position: 1-244
Cow position:
Alignm length: 249
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 203

Conread position: 1-244
Cow position:
Alignm length: 246
Alignm identity: 185
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 183, 115

Conread position: 1-244
Cow position:
Alignm length: 248
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 222

Conread position: 1-244
Cow position:
Alignm length: 246
Alignm identity: 181
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 188, 109

Conread position: 1-244
Cow position:
Alignm length: 245
Alignm identity: 189
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 165, 56

Conread position: 1-244
Cow position:
Alignm length: 248
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 1-244
Cow position:
Alignm length: 248
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 26

Conread position: 1-244
Cow position:
Alignm length: 246
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 22

Conread position: 1-244
Cow position:
Alignm length: 245
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 105

Conread position: 1-244
Cow position:
Alignm length: 249
Alignm identity: 183
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 107, 21

Conread position: 1-244
Cow position:
Alignm length: 246
Alignm identity: 187
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 22, 41

Conread position: 1-244
Cow position:
Alignm length: 249
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 1-244
Cow position:
Alignm length: 248
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 1-244
Cow position:
Alignm length: 245
Alignm identity: 175
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 22, 56

Conread position: 1-244
Cow position:
Alignm length: 250
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 51

Conread position: 1-244
Cow position:
Alignm length: 248
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 95

Conread position: 1-244
Cow position:
Alignm length: 247
Alignm identity: 185
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 23, 94

Conread position: 1-244
Cow position:
Alignm length: 248
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 80

Conread position: 1-244
Cow position:
Alignm length: 249
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 97

Conread position: 1-244
Cow position:
Alignm length: 247
Alignm identity: 176
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 23, 221

Conread position: 1-244
Cow position:
Alignm length: 248
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 1-244
Cow position:
Alignm length: 248
Alignm identity: 183
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 22, 81

Conread position: 1-244
Cow position:
Alignm length: 247
Alignm identity: 186
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 166, 22

Conread position: 1-244
Cow position:
Alignm length: 247
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 101

Conread position: 1-244
Cow position:
Alignm length: 250
Alignm identity: 185
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 13, 29

Conread position: 1-244
Cow position:
Alignm length: 246
Alignm identity: 190
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 18, 79

Conread position: 1-244
Cow position:
Alignm length: 246
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 177

Conread position: 1-244
Cow position:
Alignm length: 248
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 117

Conread position: 1-244
Cow position:
Alignm length: 247
Alignm identity: 190
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 165, 70

Conread position: 1-244
Cow position:
Alignm length: 251
Alignm identity: 183
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 22, 56

Conread position: 2-162
Cow position:
Alignm length: 162
Alignm identity: 131
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 21, 0

Conread position: 2-211
Cow position:
Alignm length: 215
Alignm identity: 165
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 117, 0

Conread position: 2-212
Cow position:
Alignm length: 214
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 0

Conread position: 2-214
Cow position:
Alignm length: 220
Alignm identity: 156
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 143, 20

Conread position: 2-236
Cow position:
Alignm length: 241
Alignm identity: 189
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 21, 81

Conread position: 2-242
Cow position:
Alignm length: 244
Alignm identity: 185
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 18, 58

Conread position: 2-244
Cow position:
Alignm length: 245
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 76

Conread position: 2-244
Cow position:
Alignm length: 248
Alignm identity: 188
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 150, 79

Conread position: 2-244
Cow position:
Alignm length: 249
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 87

Conread position: 3-219
Cow position:
Alignm length: 224
Alignm identity: 173
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 5, 51

Conread position: 3-219
Cow position:
Alignm length: 221
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 114

Conread position: 3-220
Cow position:
Alignm length: 220
Alignm identity: 145
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 15, 141

Conread position: 3-220
Cow position:
Alignm length: 220
Alignm identity: 168
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 166, 22

Conread position: 3-223
Cow position:
Alignm length: 225
Alignm identity: 171
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 152, 95

Conread position: 3-244
Cow position:
Alignm length: 245
Alignm identity: 194
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 167, 20

Conread position: 3-244
Cow position:
Alignm length: 252
Alignm identity: 189
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 46, 102

Conread position: 4-244
Cow position:
Alignm length: 243
Alignm identity: 177
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 14, 78

Conread position: 4-244
Cow position:
Alignm length: 248
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 221

Conread position: 6-217
Cow position:
Alignm length: 216
Alignm identity: 156
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 16, 88

Conread position: 6-222
Cow position:
Alignm length: 220
Alignm identity: 155
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 17, 78

Conread position: 6-244
Cow position:
Alignm length: 243
Alignm identity: 187
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 12, 114

Conread position: 8-244
Cow position:
Alignm length: 240
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 103

Conread position: 9-217
Cow position:
Alignm length: 211
Alignm identity: 151
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 136, 83

Conread position: 9-238
Cow position:
Alignm length: 235
Alignm identity: 161
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 16, 86

Conread position: 11-214
Cow position:
Alignm length: 207
Alignm identity: 168
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 39

Conread position: 11-244
Cow position:
Alignm length: 249
Alignm identity: 173
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 12, 0

Conread position: 13-220
Cow position:
Alignm length: 211
Alignm identity: 152
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 6, 89

Conread position: 15-211
Cow position:
Alignm length: 198
Alignm identity: 161
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 8

Conread position: 17-218
Cow position:
Alignm length: 203
Alignm identity: 161
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 149, 65

Conread position: 17-223
Cow position:
Alignm length: 207
Alignm identity: 156
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 64, 0

Conread position: 17-244
Cow position:
Alignm length: 232
Alignm identity: 173
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 150, 21

Conread position: 17-244
Cow position:
Alignm length: 229
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 77

Conread position: 17-244
Cow position:
Alignm length: 229
Alignm identity: 157
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 149, 77

Conread position: 19-217
Cow position:
Alignm length: 202
Alignm identity: 154
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 157, 147

Conread position: 19-244
Cow position:
Alignm length: 230
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 208

Conread position: 19-244
Cow position:
Alignm length: 228
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 11

Conread position: 21-244
Cow position:
Alignm length: 227
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 0

Conread position: 24-219
Cow position:
Alignm length: 200
Alignm identity: 142
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 99, 58

Conread position: 27-222
Cow position:
Alignm length: 199
Alignm identity: 113
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 138, 7

Conread position: 42-187
Cow position:
Alignm length: 147
Alignm identity: 113
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 125, 47

Conread position: 42-244
Cow position:
Alignm length: 206
Alignm identity: 165
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 93

Conread position: 42-244
Cow position:
Alignm length: 205
Alignm identity: 155
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 145, 30

Conread position: 44-219
Cow position:
Alignm length: 178
Alignm identity: 135
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 18, 38

Conread position: 49-212
Cow position:
Alignm length: 166
Alignm identity: 138
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 110, 0

Conread position: 53-238
Cow position:
Alignm length: 188
Alignm identity: 148
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 136, 45

Conread position: 56-191
Cow position:
Alignm length: 137
Alignm identity: 113
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 110, 131

Conread position: 56-244
Cow position:
Alignm length: 189
Alignm identity: 148
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 115, 0

Conread position: 66-244
Cow position:
Alignm length: 184
Alignm identity: 142
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 100, 21

Conread position: 71-244
Cow position:
Alignm length: 177
Alignm identity: 144
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 96, 160

Conread position: 77-220
Cow position:
Alignm length: 146
Alignm identity: 118
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 89, 138

Conread position: 84-236
Cow position:
Alignm length: 156
Alignm identity: 126
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 83, 0

Conread position: 95-222
Cow position:
Alignm length: 131
Alignm identity: 101
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 70, 0

Conread position: 95-243
Cow position:
Alignm length: 154
Alignm identity: 118
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 70, 110

Conread position: 103-219
Cow position:
Alignm length: 120
Alignm identity: 97
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 64, 25

Conread position: 106-228
Cow position:
Alignm length: 126
Alignm identity: 100
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 61, 0

Conread position: 123-244
Cow position:
Alignm length: 126
Alignm identity: 99
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 44, 0

Show alignments to all cow chromosomes.