Cow genome map
| Conread name: | rpigcf0_020330.y1 |
| Conread position: | 1-188 |
| Cow position: | chr12:5134849-5135040 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 161 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 1-188 |
| Cow position: | chr12:40307406-40307593 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 151 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 22, 97 |
| Conread position: | 1-195 |
| Cow position: | chr12:6687579-6687764 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 18, 101 |
| Conread position: | 1-211 |
| Cow position: | chr12:6241019-6241231 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 165 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 22, 154 |
| Conread position: | 1-211 |
| Cow position: | chr12:31532691-31532490 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 166, 25 |
| Conread position: | 1-213 |
| Cow position: | chr12:30745423-30745637 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 90 |
| Conread position: | 1-214 |
| Cow position: | chr12:6411018-6410811 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 22, 106 |
| Conread position: | 1-214 |
| Cow position: | chr12:9465750-9465539 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 37, 88 |
| Conread position: | 1-214 |
| Cow position: | chr12:41083776-41083990 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 31 |
| Conread position: | 1-215 |
| Cow position: | chr12:39486140-39486349 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 0 |
| Conread position: | 1-217 |
| Cow position: | chr12:12017586-12017804 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 171 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 23, 98 |
| Conread position: | 1-217 |
| Cow position: | chr12:32391555-32391775 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 172 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 23, 118 |
| Conread position: | 1-217 |
| Cow position: | chr12:44766793-44767000 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 18, 93 |
| Conread position: | 1-218 |
| Cow position: | chr12:8943510-8943293 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 57 |
| Conread position: | 1-220 |
| Cow position: | chr12:17000968-17001190 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 216 |
| Conread position: | 1-220 |
| Cow position: | chr12:18123397-18123609 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 93 |
| Conread position: | 1-221 |
| Cow position: | chr12:35807386-35807610 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 19, 136 |
| Conread position: | 1-222 |
| Cow position: | chr12:24755314-24755103 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 20, 45 |
| Conread position: | 1-222 |
| Cow position: | chr12:30437961-30438172 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 169, 77 |
| Conread position: | 1-222 |
| Cow position: | chr12:31959603-31959818 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 22, 123 |
| Conread position: | 1-229 |
| Cow position: | chr12:10461716-10461938 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 17, 42 |
| Conread position: | 1-232 |
| Cow position: | chr12:29484181-29483949 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 17, 104 |
| Conread position: | 1-242 |
| Cow position: | chr12:6720032-6720274 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 11 |
| Conread position: | 1-242 |
| Cow position: | chr12:15530775-15531007 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 166, 22 |
| Conread position: | 1-242 |
| Cow position: | chr12:17079968-17080210 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 181 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 17, 77 |
| Conread position: | 1-243 |
| Cow position: | chr12:11056586-11056825 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 182 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 18, 163 |
| Conread position: | 1-244 |
| Cow position: | chr12:3578992-3579238 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 185 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 42, 22 |
| Conread position: | 1-244 |
| Cow position: | chr12:3950641-3950394 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1-244 |
| Cow position: | chr12:4116215-4116440 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 166, 55 |
| Conread position: | 1-244 |
| Cow position: | chr12:5905767-5906007 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 81 |
| Conread position: | 1-244 |
| Cow position: | chr12:6164319-6164071 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 186 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1-244 |
| Cow position: | chr12:6489266-6489037 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 189, 70 |
| Conread position: | 1-244 |
| Cow position: | chr12:15429890-15429645 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 218 |
| Conread position: | 1-244 |
| Cow position: | chr12:17007907-17008155 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 217 |
| Conread position: | 1-244 |
| Cow position: | chr12:17031331-17031567 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 189 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 17, 75 |
| Conread position: | 1-244 |
| Cow position: | chr12:18421216-18420971 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 229 |
| Conread position: | 1-244 |
| Cow position: | chr12:18577560-18577790 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 186 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 166, 79 |
| Conread position: | 1-244 |
| Cow position: | chr12:20777219-20776970 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 190 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 85, 22 |
| Conread position: | 1-244 |
| Cow position: | chr12:26317169-26317416 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 16, 79 |
| Conread position: | 1-244 |
| Cow position: | chr12:32169246-32169492 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 5 |
| Conread position: | 1-244 |
| Cow position: | chr12:34673619-34673389 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 189 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 165, 70 |
| Conread position: | 1-244 |
| Cow position: | chr12:42167356-42167601 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 125 |
| Conread position: | 2-195 |
| Cow position: | chr12:3615601-3615788 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 21, 52 |
| Conread position: | 2-221 |
| Cow position: | chr12:40910579-40910359 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 173 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 84, 109 |
| Conread position: | 2-222 |
| Cow position: | chr12:5632163-5631951 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 17, 106 |
| Conread position: | 2-235 |
| Cow position: | chr12:35707214-35706986 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 146, 13 |
| Conread position: | 2-244 |
| Cow position: | chr12:17881583-17881812 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 16, 41 |
| Conread position: | 2-244 |
| Cow position: | chr12:26223274-26223036 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 189 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 22, 41 |
| Conread position: | 3-184 |
| Cow position: | chr12:25805398-25805219 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 27, 94 |
| Conread position: | 3-222 |
| Cow position: | chr12:6210445-6210226 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 21, 92 |
| Conread position: | 3-229 |
| Cow position: | chr12:12199193-12198964 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 141, 72 |
| Conread position: | 3-244 |
| Cow position: | chr12:19502708-19502477 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 183 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 20, 168 |
| Conread position: | 6-217 |
| Cow position: | chr12:22047185-22047398 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 133, 157 |
| Conread position: | 6-242 |
| Cow position: | chr12:25561085-25561319 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 95 |
| Conread position: | 7-222 |
| Cow position: | chr12:18388566-18388357 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 170 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 12, 88 |
| Conread position: | 7-244 |
| Cow position: | chr12:45820641-45820415 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 17, 50 |
| Conread position: | 11-174 |
| Cow position: | chr12:12976466-12976296 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 11-221 |
| Cow position: | chr12:2812943-2813155 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 167 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 10, 35 |
| Conread position: | 11-242 |
| Cow position: | chr12:29411768-29411540 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 176 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 156, 110 |
| Conread position: | 13-243 |
| Cow position: | chr12:42879429-42879644 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 154, 68 |
| Conread position: | 15-244 |
| Cow position: | chr12:37770600-37770828 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 95 |
| Conread position: | 17-244 |
| Cow position: | chr12:39465305-39465530 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 171 |
| Conread position: | 19-204 |
| Cow position: | chr12:8710560-8710739 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 150, 75 |
| Conread position: | 19-242 |
| Cow position: | chr12:24020450-24020668 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 169, 136 |
| Conread position: | 28-236 |
| Cow position: | chr12:29162073-29161869 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 116, 82 |
| Conread position: | 36-220 |
| Cow position: | chr12:5635702-5635520 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 134, 73 |
| Conread position: | 46-244 |
| Cow position: | chr12:29770817-29770621 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 121, 43 |
| Conread position: | 49-244 |
| Cow position: | chr12:28471398-28471590 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 118, 31 |
| Conread position: | 50-208 |
| Cow position: | chr12:4809065-4809225 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 116, 99 |
| Conread position: | 52-243 |
| Cow position: | chr12:35377961-35378151 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 118, 92 |
| Conread position: | 53-244 |
| Cow position: | chr12:35669703-35669520 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 116, 28 |
| Conread position: | 54-244 |
| Cow position: | chr12:38454682-38454860 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 135, 27 |
| Conread position: | 57-244 |
| Cow position: | chr12:27037681-27037499 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 133, 5 |
| Conread position: | 59-217 |
| Cow position: | chr12:4162602-4162441 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 59-243 |
| Cow position: | chr12:13156443-13156625 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 108, 168 |
| Conread position: | 61-198 |
| Cow position: | chr12:30210247-30210389 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 70-244 |
| Cow position: | chr12:33851135-33851312 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 85-244 |
| Cow position: | chr12:36544858-36544692 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 85, 70 |
Show alignments to all cow chromosomes.