Cow genome map

Conread name: rpigcf0_020330.y1

Conread position: 1-154
Cow position: chr14:16525173-16525019 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 121
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 17, 0

Conread position: 1-164
Cow position: chr14:19106169-19106006 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 17, 49

Conread position: 1-180
Cow position: chr14:34096301-34096475 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 145
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 165, 95

Conread position: 1-190
Cow position: chr14:37640527-37640342 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 142
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 22, 80

Conread position: 1-194
Cow position: chr14:31399871-31399674 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 148
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 17, 0

Conread position: 1-199
Cow position: chr14:24581218-24581021 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 169
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 110

Conread position: 1-201
Cow position: chr14:20666730-20666930 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 163
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 167, 25

Conread position: 1-204
Cow position: chr14:27791825-27791624 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 160
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 20, 186

Conread position: 1-211
Cow position: chr14:10858726-10858517 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 158
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 21, 108

Conread position: 1-211
Cow position: chr14:34199547-34199765 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 171
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 17, 92

Conread position: 1-213
Cow position: chr14:11819829-11820041 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 172
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 22, 96

Conread position: 1-214
Cow position: chr14:7960055-7959858 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 156
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 139, 22

Conread position: 1-214
Cow position: chr14:33209064-33209270 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 166
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 17, 96

Conread position: 1-215
Cow position: chr14:28795971-28795754 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 168
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 17, 165

Conread position: 1-220
Cow position: chr14:33791484-33791262 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 216

Conread position: 1-220
Cow position: chr14:37624193-37624412 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 158
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 25, 94

Conread position: 1-220
Cow position: chr14:39779048-39778830 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 165

Conread position: 1-221
Cow position: chr14:22583433-22583219 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 165
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 168, 81

Conread position: 1-221
Cow position: chr14:34082861-34083072 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 173
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 17, 37

Conread position: 1-221
Cow position: chr14:35544220-35544439 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 173
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 22, 180

Conread position: 1-221
Cow position: chr14:41211152-41210929 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 1-221
Cow position: chr14:47483990-47483767 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 160
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 22, 166

Conread position: 1-222
Cow position: chr14:27848495-27848273 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 100

Conread position: 1-223
Cow position: chr14:39774760-39774977 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 172
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 22, 82

Conread position: 1-229
Cow position: chr14:6984673-6984898 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 164
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 141, 80

Conread position: 1-229
Cow position: chr14:35018461-35018687 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 181
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 21, 94

Conread position: 1-232
Cow position: chr14:37103498-37103275 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 175
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 17, 37

Conread position: 1-234
Cow position: chr14:36151687-36151466 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 170
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 188, 21

Conread position: 1-238
Cow position: chr14:33714393-33714620 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 182
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 22, 82

Conread position: 1-239
Cow position: chr14:42154666-42154910 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 1-240
Cow position: chr14:8784470-8784239 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 185
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 166, 41

Conread position: 1-243
Cow position: chr14:22989329-22989087 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 100

Conread position: 1-244
Cow position: chr14:4991286-4991055 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 185
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 21, 56

Conread position: 1-244
Cow position: chr14:9308520-9308282 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 185
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 17, 109

Conread position: 1-244
Cow position: chr14:15033051-15032807 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 179
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 22, 95

Conread position: 1-244
Cow position: chr14:18345436-18345679 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 37

Conread position: 1-244
Cow position: chr14:18904313-18904557 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 226

Conread position: 1-244
Cow position: chr14:20640326-20640577 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 1-244
Cow position: chr14:26432946-26433189 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 170

Conread position: 1-244
Cow position: chr14:26442043-26442290 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 146

Conread position: 1-244
Cow position: chr14:37131953-37131706 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 1-244
Cow position: chr14:41749469-41749707 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 186
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 173, 81

Conread position: 1-244
Cow position: chr14:42596672-42596435 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 191
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 22, 51

Conread position: 1-244
Cow position: chr14:48427371-48427124 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 1-244
Cow position: chr14:49543898-49543663 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 184
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 22, 38

Conread position: 2-240
Cow position: chr14:24837669-24837899 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 172
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 160, 19

Conread position: 3-210
Cow position: chr14:34221347-34221140 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 153
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 15, 92

Conread position: 3-217
Cow position: chr14:5630453-5630239 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 163
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 164, 107

Conread position: 3-222
Cow position: chr14:9901463-9901250 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 173
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 20, 94

Conread position: 3-242
Cow position: chr14:21538189-21538395 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 178
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 78, 0

Conread position: 4-175
Cow position: chr14:21534749-21534913 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 135
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 18, 7

Conread position: 4-199
Cow position: chr14:47385927-47385741 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 147
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 19, 60

Conread position: 5-240
Cow position: chr14:8495444-8495207 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 180
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 162, 90

Conread position: 6-178
Cow position: chr14:38168973-38168801 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 133
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 12, 48

Conread position: 6-197
Cow position: chr14:28098141-28097962 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 148
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 17, 64

Conread position: 6-220
Cow position: chr14:43036168-43035959 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 165
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 17, 77

Conread position: 6-221
Cow position: chr14:8848538-8848328 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 167
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 15, 158

Conread position: 6-223
Cow position: chr14:39926481-39926273 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 169
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 17, 77

Conread position: 7-220
Cow position: chr14:38337862-38338070 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 161
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 16, 25

Conread position: 9-244
Cow position: chr14:30926992-30926757 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 182
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 11, 72

Conread position: 11-199
Cow position: chr14:41325151-41325341 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 153
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 12, 123

Conread position: 11-233
Cow position: chr14:3437275-3437055 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 160
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 11, 35

Conread position: 19-244
Cow position: chr14:29632607-29632833 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 164
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 150, 0

Conread position: 20-210
Cow position: chr14:28708307-28708112 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 144
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 63, 94

Conread position: 20-244
Cow position: chr14:8750349-8750124 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 173
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 28, 7

Conread position: 21-239
Cow position: chr14:39918489-39918703 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 167
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 168, 59

Conread position: 31-185
Cow position: chr14:13846250-13846099 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 122
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 136, 65

Conread position: 32-214
Cow position: chr14:40433184-40433001 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 147
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 134, 16

Conread position: 36-217
Cow position: chr14:10721474-10721651 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 138
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 9, 53

Conread position: 37-220
Cow position: chr14:2959778-2959588 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 138
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 37, 70

Conread position: 43-214
Cow position: chr14:1645937-1646111 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 141
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 123, 0

Conread position: 45-217
Cow position: chr14:16033257-16033086 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 137
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 122, 25

Conread position: 46-206
Cow position: chr14:24387700-24387537 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 131
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 121, 0

Conread position: 51-232
Cow position: chr14:13043005-13042819 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 145
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 60, 0

Conread position: 52-244
Cow position: chr14:16760642-16760452 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 142
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 114, 131

Conread position: 59-244
Cow position: chr14:20110484-20110669 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 147
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 108, 132

Conread position: 59-244
Cow position: chr14:26190860-26191051 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 139
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 84, 108

Conread position: 71-222
Cow position: chr14:20826696-20826550 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 96, 27

Conread position: 84-221
Cow position: chr14:14581080-14580939 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 55, 0

Conread position: 86-243
Cow position: chr14:15997555-15997711 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 116
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 59, 79

Conread position: 87-220
Cow position: chr14:41966451-41966316 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 80, 0

Conread position: 87-244
Cow position: chr14:16256977-16256819 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 128
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 78, 0

Conread position: 93-235
Cow position: chr14:36289595-36289741 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 110
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 47, 0

Conread position: 101-244
Cow position: chr14:24608163-24608017 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 117
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 69, 0

Conread position: 103-244
Cow position: chr14:15492791-15492647 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 63, 0

Conread position: 111-242
Cow position: chr14:16549817-16549949 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 59, 116

Conread position: 111-244
Cow position: chr14:23080578-23080714 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 56, 9

Show alignments to all cow chromosomes.