Cow genome map

Conread name: rpigcf0_020330.y1

Conread position: 1-172
Cow position: chr15:13669563-13669731 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 139
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 165, 81

Conread position: 1-177
Cow position: chr15:5658503-5658326 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 140
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 21, 31

Conread position: 1-181
Cow position: chr15:52197973-52198145 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 135
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 162, 97

Conread position: 1-195
Cow position: chr15:46563138-46563345 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 157
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 20, 146

Conread position: 1-204
Cow position: chr15:17869953-17870148 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 159
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 17, 70

Conread position: 1-210
Cow position: chr15:44051158-44051367 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 166
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 27, 22

Conread position: 1-211
Cow position: chr15:45323124-45322918 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 165
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 142, 105

Conread position: 1-217
Cow position: chr15:9871070-9871289 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 0

Conread position: 1-217
Cow position: chr15:20472205-20472421 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 171
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 17, 51

Conread position: 1-217
Cow position: chr15:29792571-29792785 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 167
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 17, 94

Conread position: 1-217
Cow position: chr15:39621679-39621465 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 168
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 22, 80

Conread position: 1-219
Cow position: chr15:16640124-16639905 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 163
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 170, 200

Conread position: 1-219
Cow position: chr15:38846437-38846224 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 165
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 20, 81

Conread position: 1-220
Cow position: chr15:16543123-16543332 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 164
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 22, 81

Conread position: 1-220
Cow position: chr15:22532582-22532359 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 1-220
Cow position: chr15:24128990-24128772 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 175
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 17, 96

Conread position: 1-220
Cow position: chr15:28513747-28513968 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 175
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 80, 52

Conread position: 1-220
Cow position: chr15:30316251-30316460 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 161
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 22, 0

Conread position: 1-221
Cow position: chr15:12785777-12785546 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 166
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 20, 0

Conread position: 1-221
Cow position: chr15:16112745-16112521 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 167
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 144, 207

Conread position: 1-221
Cow position: chr15:17683369-17683149 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 158
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 24, 48

Conread position: 1-221
Cow position: chr15:30800223-30800004 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 172
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 16, 103

Conread position: 1-221
Cow position: chr15:30985940-30986159 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 159
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 22, 84

Conread position: 1-222
Cow position: chr15:13846236-13846473 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 173
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 22, 0

Conread position: 1-225
Cow position: chr15:48486974-48486750 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 160
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 17, 117

Conread position: 1-235
Cow position: chr15:5234664-5234894 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 93

Conread position: 1-241
Cow position: chr15:26404610-26404385 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 174
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 18, 77

Conread position: 1-242
Cow position: chr15:14871088-14870842 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 171

Conread position: 1-242
Cow position: chr15:24968128-24967890 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 195
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 17, 35

Conread position: 1-244
Cow position: chr15:3699941-3700189 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 1-244
Cow position: chr15:6530503-6530748 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 150

Conread position: 1-244
Cow position: chr15:6586372-6586617 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 228

Conread position: 1-244
Cow position: chr15:13515710-13515466 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 22

Conread position: 1-244
Cow position: chr15:16476403-16476639 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 186
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 18, 161

Conread position: 1-244
Cow position: chr15:23486832-23487068 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 187
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 17, 65

Conread position: 1-244
Cow position: chr15:23567786-23568027 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 196
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 151, 56

Conread position: 1-244
Cow position: chr15:24044757-24044999 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 89

Conread position: 1-244
Cow position: chr15:25208423-25208665 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 168

Conread position: 1-244
Cow position: chr15:29340403-29340163 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 80

Conread position: 1-244
Cow position: chr15:30047195-30047446 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 1-244
Cow position: chr15:33306448-33306209 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 31

Conread position: 1-244
Cow position: chr15:40957920-40957676 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 84

Conread position: 1-244
Cow position: chr15:52611654-52611407 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 234

Conread position: 2-146
Cow position: chr15:10450562-10450707 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 21, 9

Conread position: 2-222
Cow position: chr15:13554681-13554473 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 171
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 20, 92

Conread position: 2-238
Cow position: chr15:10336091-10335860 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 21

Conread position: 2-244
Cow position: chr15:11658225-11658474 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 3-193
Cow position: chr15:33679033-33678851 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 142
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 79, 0

Conread position: 3-219
Cow position: chr15:11011270-11011482 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 172
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 17, 80

Conread position: 3-221
Cow position: chr15:41583249-41583029 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 173
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 23, 94

Conread position: 3-244
Cow position: chr15:5730276-5730041 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 183
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 15, 80

Conread position: 3-244
Cow position: chr15:15707781-15708014 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 187
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 20, 29

Conread position: 3-244
Cow position: chr15:36422994-36422758 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 28

Conread position: 5-178
Cow position: chr15:39090599-39090437 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 134
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 13, 38

Conread position: 6-221
Cow position: chr15:47822135-47821930 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 168
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 17, 25

Conread position: 7-232
Cow position: chr15:40009315-40009542 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 177
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 15, 83

Conread position: 8-193
Cow position: chr15:26158284-26158466 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 151
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 158, 74

Conread position: 9-243
Cow position: chr15:16823269-16823036 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 179
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 54, 73

Conread position: 10-242
Cow position: chr15:24128352-24128129 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 172
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 8, 32

Conread position: 11-214
Cow position: chr15:22939002-22939196 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 157
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 12, 92

Conread position: 11-232
Cow position: chr15:10456682-10456903 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 13

Conread position: 11-235
Cow position: chr15:19279763-19279983 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 162
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 174, 83

Conread position: 15-244
Cow position: chr15:17763226-17763004 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 174
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 152, 66

Conread position: 17-195
Cow position: chr15:30982240-30982072 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 140
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 150, 44

Conread position: 17-217
Cow position: chr15:36782008-36782201 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 153
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 153, 75

Conread position: 17-222
Cow position: chr15:12304965-12304761 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 163
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 149, 77

Conread position: 17-244
Cow position: chr15:21908258-21908035 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 179
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 150, 25

Conread position: 18-217
Cow position: chr15:20352157-20351955 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 155
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 55, 131

Conread position: 19-244
Cow position: chr15:39598560-39598342 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 177
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 149, 57

Conread position: 25-225
Cow position: chr15:20082076-20081879 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 157
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 141, 163

Conread position: 27-220
Cow position: chr15:20390964-20391153 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 162
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 143, 84

Conread position: 27-221
Cow position: chr15:42788840-42789026 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 150
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 163, 29

Conread position: 31-196
Cow position: chr15:47843797-47843962 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 42-242
Cow position: chr15:24305179-24305380 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 154
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 151, 100

Conread position: 42-244
Cow position: chr15:1722552-1722751 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 160
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 125, 15

Conread position: 44-206
Cow position: chr15:1128293-1128130 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 143, 17

Conread position: 46-244
Cow position: chr15:23696622-23696811 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 155
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 121, 36

Conread position: 46-244
Cow position: chr15:36259307-36259504 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 155
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 40, 19

Conread position: 48-232
Cow position: chr15:36671741-36671930 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 139
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 74, 96

Conread position: 51-244
Cow position: chr15:33643376-33643190 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 142
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 139, 30

Conread position: 53-244
Cow position: chr15:7456985-7456795 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 146
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 112, 29

Conread position: 59-214
Cow position: chr15:45585007-45584853 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 80, 100

Conread position: 59-220
Cow position: chr15:25907195-25907039 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 132
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 25, 88

Conread position: 60-235
Cow position: chr15:41045686-41045513 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 138
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 81, 9

Conread position: 60-244
Cow position: chr15:38877022-38877204 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 153
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 110, 89

Conread position: 61-232
Cow position: chr15:49230061-49230230 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 126
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 35, 107

Conread position: 62-244
Cow position: chr15:5715831-5715651 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 141
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 103, 20

Conread position: 83-244
Cow position: chr15:8354305-8354141 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 84, 0

Conread position: 96-244
Cow position: chr15:16261562-16261413 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 17, 30

Conread position: 116-244
Cow position: chr15:36353897-36353768 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 107
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 53, 0

Conread position: 125-244
Cow position: chr15:30470750-30470872 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 42, 0

Show alignments to all cow chromosomes.