Cow genome map

Conread name: rpigcf0_020330.y1

Conread position: 1-152
Cow position: chr20:4893106-4892962 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 121
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 18, 92

Conread position: 1-177
Cow position: chr20:32847143-32847321 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 152
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 93

Conread position: 1-193
Cow position: chr20:10913543-10913351 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 147
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 18, 42

Conread position: 1-193
Cow position: chr20:14879577-14879768 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 155
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 22, 89

Conread position: 1-210
Cow position: chr20:7442333-7442127 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 166
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 23, 93

Conread position: 1-211
Cow position: chr20:33532102-33532307 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 159
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 17, 71

Conread position: 1-214
Cow position: chr20:31746832-31746624 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 165
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 165, 22

Conread position: 1-216
Cow position: chr20:38768662-38768450 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 94

Conread position: 1-217
Cow position: chr20:581129-580916 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 162
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 168, 99

Conread position: 1-217
Cow position: chr20:12334173-12334383 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 163
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 22, 82

Conread position: 1-217
Cow position: chr20:13876917-13876697 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 161
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 26, 130

Conread position: 1-217
Cow position: chr20:21019356-21019572 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 163
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 21, 79

Conread position: 1-218
Cow position: chr20:14831822-14831605 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 162
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 22, 95

Conread position: 1-220
Cow position: chr20:7806771-7806548 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 171
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 20, 173

Conread position: 1-220
Cow position: chr20:10235643-10235864 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 203

Conread position: 1-220
Cow position: chr20:13752032-13752244 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 99

Conread position: 1-220
Cow position: chr20:26996325-26996546 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 22

Conread position: 1-221
Cow position: chr20:33170083-33169861 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 167
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 144, 101

Conread position: 1-221
Cow position: chr20:39398280-39398497 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 73

Conread position: 1-222
Cow position: chr20:6890496-6890728 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 169
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 21, 178

Conread position: 1-222
Cow position: chr20:13465309-13465522 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 157
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 18, 98

Conread position: 1-223
Cow position: chr20:6240738-6240506 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 178
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 17, 0

Conread position: 1-225
Cow position: chr20:22445843-22445622 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 93

Conread position: 1-230
Cow position: chr20:4205754-4205988 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 1-232
Cow position: chr20:12582156-12581934 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 184
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 19, 81

Conread position: 1-235
Cow position: chr20:7110325-7110094 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 169
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 194, 85

Conread position: 1-237
Cow position: chr20:22235105-22235337 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 90

Conread position: 1-242
Cow position: chr20:18618430-18618667 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 185
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 189, 97

Conread position: 1-242
Cow position: chr20:23505620-23505859 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 111

Conread position: 1-243
Cow position: chr20:23065041-23064799 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 180
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 22, 99

Conread position: 1-243
Cow position: chr20:28982489-28982733 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 81

Conread position: 1-244
Cow position: chr20:3781636-3781391 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 185
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 17, 79

Conread position: 1-244
Cow position: chr20:6258272-6258029 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 26

Conread position: 1-244
Cow position: chr20:8703115-8702883 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 186
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 189, 68

Conread position: 1-244
Cow position: chr20:9412287-9412520 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 175
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 22, 0

Conread position: 1-244
Cow position: chr20:10208595-10208840 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 183
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 164, 21

Conread position: 1-244
Cow position: chr20:12420830-12420586 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 100

Conread position: 1-244
Cow position: chr20:13269416-13269654 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 26

Conread position: 1-244
Cow position: chr20:14806677-14806919 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 102

Conread position: 1-244
Cow position: chr20:19363571-19363330 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 71

Conread position: 1-244
Cow position: chr20:20203007-20203250 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 96

Conread position: 1-244
Cow position: chr20:28604997-28605242 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 192
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 163, 118

Conread position: 1-244
Cow position: chr20:31740424-31740187 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 187
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 23, 36

Conread position: 1-244
Cow position: chr20:33363311-33363550 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 182
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 17, 84

Conread position: 1-244
Cow position: chr20:35364843-35365078 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 173
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 192, 81

Conread position: 1-244
Cow position: chr20:38817802-38818039 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 184
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 166, 91

Conread position: 1-244
Cow position: chr20:40511966-40511723 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 192
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 115, 95

Conread position: 2-219
Cow position: chr20:382335-382104 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 179
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 17, 165

Conread position: 2-220
Cow position: chr20:15582244-15582027 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 159
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 16, 81

Conread position: 2-220
Cow position: chr20:25686559-25686338 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 164
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 169, 0

Conread position: 2-225
Cow position: chr20:5998874-5998657 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 179
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 16, 106

Conread position: 2-244
Cow position: chr20:36331636-36331390 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 3-215
Cow position: chr20:9014555-9014340 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 163
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 15, 163

Conread position: 3-219
Cow position: chr20:11550159-11550375 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 174
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 18, 102

Conread position: 3-222
Cow position: chr20:23792397-23792620 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 180
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 60, 24

Conread position: 3-230
Cow position: chr20:38578961-38578742 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 175
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 164, 20

Conread position: 3-237
Cow position: chr20:18321004-18320764 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 3-244
Cow position: chr20:5826730-5826976 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 4-244
Cow position: chr20:3607157-3606928 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 189
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 180, 10

Conread position: 6-244
Cow position: chr20:7756833-7756590 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 178
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 17, 77

Conread position: 6-244
Cow position: chr20:24069608-24069838 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 187
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 164, 31

Conread position: 6-244
Cow position: chr20:39517807-39518039 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 182
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 17, 54

Conread position: 7-220
Cow position: chr20:8578043-8578259 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 170
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 158, 15

Conread position: 7-230
Cow position: chr20:1989942-1989729 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 154
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 12, 21

Conread position: 7-233
Cow position: chr20:29633194-29632977 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 168
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 16, 76

Conread position: 12-238
Cow position: chr20:27977908-27977679 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 162
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 11, 156

Conread position: 12-242
Cow position: chr20:8556472-8556238 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 0

Conread position: 17-180
Cow position: chr20:18423529-18423687 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 65, 0

Conread position: 17-221
Cow position: chr20:27408067-27407863 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 164
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 153, 21

Conread position: 17-236
Cow position: chr20:21324935-21325142 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 165
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 168, 75

Conread position: 17-238
Cow position: chr20:11542475-11542254 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 177
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 66, 103

Conread position: 17-244
Cow position: chr20:8607112-8606896 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 173
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 80, 84

Conread position: 17-244
Cow position: chr20:22313349-22313128 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 173
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 149, 42

Conread position: 19-244
Cow position: chr20:32084274-32084047 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 23

Conread position: 21-214
Cow position: chr20:36207614-36207809 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 160
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 121

Conread position: 24-225
Cow position: chr20:7550056-7550254 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 146
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 166, 72

Conread position: 25-148
Cow position: chr20:39212621-39212739 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 61, 74

Conread position: 25-220
Cow position: chr20:34364851-34365037 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 146
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 186, 46

Conread position: 41-220
Cow position: chr20:3254880-3255054 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 145
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 26, 112

Conread position: 42-244
Cow position: chr20:7210868-7211072 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 161
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 10, 181

Conread position: 44-244
Cow position: chr20:7439014-7438819 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 155
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 122, 22

Conread position: 50-214
Cow position: chr20:34221314-34221486 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 130
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 12, 0

Conread position: 50-222
Cow position: chr20:18837320-18837144 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 142
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 48, 0

Conread position: 52-220
Cow position: chr20:20241943-20242101 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 133
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 42, 0

Conread position: 56-200
Cow position: chr20:14917147-14917292 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 116
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 89, 36

Conread position: 56-242
Cow position: chr20:8307860-8308050 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 146
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 109, 173

Conread position: 60-244
Cow position: chr20:28441177-28441359 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 144
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 127, 159

Conread position: 67-234
Cow position: chr20:9267243-9267082 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 144, 39

Conread position: 76-244
Cow position: chr20:22978185-22978359 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 127
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 90, 24

Conread position: 78-244
Cow position: chr20:7362835-7362999 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 87, 14

Conread position: 83-244
Cow position: chr20:25162258-25162094 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 127
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 82, 0

Conread position: 88-221
Cow position: chr20:35407738-35407874 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 110
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 78, 0

Conread position: 101-243
Cow position: chr20:39267071-39266925 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 118
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 69, 0

Conread position: 116-221
Cow position: chr20:35710075-35710182 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 87
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 51, 0

Conread position: 123-237
Cow position: chr20:28894849-28894964 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 90
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 44, 0

Show alignments to all cow chromosomes.