Cow genome map

Conread name: rpigcf0_020330.y1

Conread position: 1-152
Cow position: chr21:26681135-26680985 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 17, 71

Conread position: 1-156
Cow position: chr21:5153429-5153581 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 124
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 22, 96

Conread position: 1-195
Cow position: chr21:8351492-8351301 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 152
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 17, 42

Conread position: 1-206
Cow position: chr21:28944552-28944348 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 153
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 22, 94

Conread position: 1-206
Cow position: chr21:33419903-33419706 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 159
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 17, 65

Conread position: 1-209
Cow position: chr21:2367152-2367354 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 158
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 17, 82

Conread position: 1-209
Cow position: chr21:21480367-21480163 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 161
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 169, 22

Conread position: 1-210
Cow position: chr21:45473946-45473733 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 158
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 22, 95

Conread position: 1-211
Cow position: chr21:395688-395892 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 167
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 165, 80

Conread position: 1-217
Cow position: chr21:393833-394047 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 171
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 20, 166

Conread position: 1-217
Cow position: chr21:6102457-6102232 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 172
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 25, 129

Conread position: 1-217
Cow position: chr21:42540408-42540196 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 169
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 17, 48

Conread position: 1-220
Cow position: chr21:4276782-4276566 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 160
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 20, 150

Conread position: 1-220
Cow position: chr21:6051318-6051537 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 173
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 22, 105

Conread position: 1-220
Cow position: chr21:7132650-7132436 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 127

Conread position: 1-221
Cow position: chr21:13128279-13128066 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 165
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 169, 22

Conread position: 1-222
Cow position: chr21:81882-82113 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 1-222
Cow position: chr21:16187987-16187776 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 176
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 169, 38

Conread position: 1-222
Cow position: chr21:33982998-33982773 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 143

Conread position: 1-223
Cow position: chr21:18494778-18495005 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 0

Conread position: 1-225
Cow position: chr21:32665960-32665742 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 157
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 22, 37

Conread position: 1-232
Cow position: chr21:45850898-45850668 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 174
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 186, 77

Conread position: 1-233
Cow position: chr21:31277633-31277863 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 164
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 17, 42

Conread position: 1-236
Cow position: chr21:29002350-29002110 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 232

Conread position: 1-239
Cow position: chr21:48251218-48250977 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 176
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 18, 142

Conread position: 1-240
Cow position: chr21:7672945-7673172 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 176
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 189, 100

Conread position: 1-241
Cow position: chr21:27569346-27569119 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 177
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 22, 0

Conread position: 1-242
Cow position: chr21:16612441-16612676 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 183
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 22, 82

Conread position: 1-242
Cow position: chr21:24130893-24131121 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 173
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 208, 93

Conread position: 1-242
Cow position: chr21:29069517-29069276 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 94

Conread position: 1-242
Cow position: chr21:42135812-42135564 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 1-243
Cow position: chr21:11740320-11740067 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 189
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 17, 171

Conread position: 1-244
Cow position: chr21:725080-724831 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 1-244
Cow position: chr21:8985361-8985605 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 187
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 23, 99

Conread position: 1-244
Cow position: chr21:12961087-12960845 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 22

Conread position: 1-244
Cow position: chr21:13089670-13089415 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 177
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 16, 182

Conread position: 1-244
Cow position: chr21:18828497-18828249 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 154

Conread position: 1-244
Cow position: chr21:18850407-18850173 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 178
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 23, 75

Conread position: 1-244
Cow position: chr21:20262522-20262279 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 88

Conread position: 1-244
Cow position: chr21:22860814-22861055 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 186
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 166, 79

Conread position: 1-244
Cow position: chr21:23150207-23149967 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 182
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 189, 80

Conread position: 1-244
Cow position: chr21:23192706-23192459 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 1-244
Cow position: chr21:27124316-27124068 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 184
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 17, 79

Conread position: 1-244
Cow position: chr21:28626053-28626295 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 42

Conread position: 1-244
Cow position: chr21:29484796-29485035 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 101

Conread position: 1-244
Cow position: chr21:30990456-30990225 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 80

Conread position: 1-244
Cow position: chr21:31691289-31691538 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 236

Conread position: 1-244
Cow position: chr21:34653896-34654127 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 187
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 166, 32

Conread position: 1-244
Cow position: chr21:36795414-36795656 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 189
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 17, 99

Conread position: 1-244
Cow position: chr21:37299277-37299515 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 193
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 25, 86

Conread position: 1-244
Cow position: chr21:38120919-38121154 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 187
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 19, 100

Conread position: 1-244
Cow position: chr21:44515086-44515317 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 183
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 17, 82

Conread position: 1-244
Cow position: chr21:46263988-46264225 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 185
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 22, 45

Conread position: 2-217
Cow position: chr21:15610967-15611170 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 156
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 7, 22

Conread position: 2-219
Cow position: chr21:22856029-22856250 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 161
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 137, 21

Conread position: 2-240
Cow position: chr21:33997409-33997178 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 173
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 19, 81

Conread position: 2-242
Cow position: chr21:2904649-2904426 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 172
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 21, 79

Conread position: 2-244
Cow position: chr21:12616952-12617193 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 97

Conread position: 2-244
Cow position: chr21:18845202-18844959 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 190
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 24, 48

Conread position: 3-220
Cow position: chr21:13035235-13035013 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 162
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 15, 164

Conread position: 3-220
Cow position: chr21:24598473-24598686 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 165
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 20, 82

Conread position: 3-222
Cow position: chr21:18289475-18289697 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 160
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 20, 91

Conread position: 3-222
Cow position: chr21:32559540-32559328 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 172
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 21, 71

Conread position: 3-238
Cow position: chr21:28443565-28443326 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 216

Conread position: 3-244
Cow position: chr21:2679366-2679610 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 227

Conread position: 3-244
Cow position: chr21:11645155-11644913 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 114

Conread position: 4-242
Cow position: chr21:9990329-9990562 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 180
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 21, 46

Conread position: 4-244
Cow position: chr21:5392727-5392483 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 129

Conread position: 5-211
Cow position: chr21:30250392-30250174 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 169
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 95, 176

Conread position: 5-244
Cow position: chr21:28190844-28191087 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 6-244
Cow position: chr21:18842421-18842184 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 180
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 17, 143

Conread position: 7-220
Cow position: chr21:20426351-20426558 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 149
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 89, 0

Conread position: 7-244
Cow position: chr21:13488337-13488579 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 104

Conread position: 9-217
Cow position: chr21:5137671-5137458 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 157
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 5, 95

Conread position: 10-220
Cow position: chr21:29979935-29979728 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 168
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 8, 73

Conread position: 11-215
Cow position: chr21:15976464-15976659 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 154
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 128, 48

Conread position: 11-242
Cow position: chr21:643155-643376 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 176
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 12, 84

Conread position: 12-244
Cow position: chr21:19363641-19363406 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 100

Conread position: 18-220
Cow position: chr21:10007812-10007610 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 149
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 6, 59

Conread position: 19-211
Cow position: chr21:21169664-21169470 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 148
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 70, 63

Conread position: 27-195
Cow position: chr21:13714005-13713836 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 117
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 143, 0

Conread position: 27-220
Cow position: chr21:27624551-27624739 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 156
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 140, 22

Conread position: 27-222
Cow position: chr21:26244767-26244951 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 149
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 6, 61

Conread position: 27-244
Cow position: chr21:48234319-48234105 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 158
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 140, 21

Conread position: 31-222
Cow position: chr21:18800686-18800502 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 143
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 139, 51

Conread position: 32-173
Cow position: chr21:14125889-14126030 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 118
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 134, 79

Conread position: 33-244
Cow position: chr21:20260476-20260266 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 165
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 16, 10

Conread position: 40-244
Cow position: chr21:18041991-18041794 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 159
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 127, 41

Conread position: 43-242
Cow position: chr21:957521-957725 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 162
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 5, 123

Conread position: 50-220
Cow position: chr21:11359899-11360068 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 133
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 120, 78

Conread position: 50-225
Cow position: chr21:12462109-12461932 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 144
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 31, 53

Conread position: 52-192
Cow position: chr21:12723020-12723158 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 115
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 113, 0

Conread position: 53-244
Cow position: chr21:17856408-17856597 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 153
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 117, 89

Conread position: 60-244
Cow position: chr21:20192774-20192950 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 145
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 110, 22

Conread position: 62-217
Cow position: chr21:27810278-27810436 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 132
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 104, 0

Conread position: 65-244
Cow position: chr21:30222218-30222398 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 145
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 102, 45

Conread position: 71-244
Cow position: chr21:44214001-44214180 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 134
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 7, 40

Conread position: 82-244
Cow position: chr21:9360335-9360490 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 60, 0

Conread position: 90-214
Cow position: chr21:22465095-22465222 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 98
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 75, 0

Conread position: 94-235
Cow position: chr21:4568187-4568331 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 76, 66

Conread position: 94-238
Cow position: chr21:10561682-10561533 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 73, 0

Conread position: 94-244
Cow position: chr21:45262910-45262757 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 115
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 73, 0

Conread position: 100-221
Cow position: chr21:45906713-45906589 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 66, 0

Show alignments to all cow chromosomes.