Cow genome map
| Conread name: | rpigcf0_020330.y1 |
| Conread position: | 1-145 |
| Cow position: | chr23:39302465-39302610 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1-165 |
| Cow position: | chr23:8918103-8917940 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 22, 119 |
| Conread position: | 1-170 |
| Cow position: | chr23:9235313-9235154 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 161, 97 |
| Conread position: | 1-195 |
| Cow position: | chr23:33940406-33940211 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 17, 106 |
| Conread position: | 1-199 |
| Cow position: | chr23:1545967-1546158 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 85, 67 |
| Conread position: | 1-203 |
| Cow position: | chr23:1321444-1321251 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 20, 89 |
| Conread position: | 1-205 |
| Cow position: | chr23:9268340-9268547 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 0 |
| Conread position: | 1-208 |
| Cow position: | chr23:16563592-16563798 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 169 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 19, 82 |
| Conread position: | 1-214 |
| Cow position: | chr23:27996883-27997096 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 23, 111 |
| Conread position: | 1-215 |
| Cow position: | chr23:12896852-12896644 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 22, 97 |
| Conread position: | 1-216 |
| Cow position: | chr23:361160-360950 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 22, 68 |
| Conread position: | 1-218 |
| Cow position: | chr23:26632550-26632774 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 0 |
| Conread position: | 1-220 |
| Cow position: | chr23:2282424-2282205 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 55 |
| Conread position: | 1-221 |
| Cow position: | chr23:24509453-24509671 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 42 |
| Conread position: | 1-221 |
| Cow position: | chr23:28053027-28053246 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 23, 94 |
| Conread position: | 1-222 |
| Cow position: | chr23:406408-406201 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 22, 33 |
| Conread position: | 1-222 |
| Cow position: | chr23:1640561-1640783 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 22, 174 |
| Conread position: | 1-222 |
| Cow position: | chr23:1700669-1700877 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 188, 22 |
| Conread position: | 1-222 |
| Cow position: | chr23:4579285-4579070 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 175 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 28, 120 |
| Conread position: | 1-222 |
| Cow position: | chr23:9595079-9594857 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 17, 50 |
| Conread position: | 1-222 |
| Cow position: | chr23:14739200-14739417 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 169, 21 |
| Conread position: | 1-222 |
| Cow position: | chr23:29459338-29459119 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 109 |
| Conread position: | 1-224 |
| Cow position: | chr23:792282-792057 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 24, 43 |
| Conread position: | 1-224 |
| Cow position: | chr23:1878121-1877901 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 94 |
| Conread position: | 1-231 |
| Cow position: | chr23:20752763-20752997 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 161, 112 |
| Conread position: | 1-232 |
| Cow position: | chr23:1905778-1906030 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 22, 110 |
| Conread position: | 1-236 |
| Cow position: | chr23:21452983-21452745 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 94 |
| Conread position: | 1-239 |
| Cow position: | chr23:15056891-15056658 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 186 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 166, 93 |
| Conread position: | 1-242 |
| Cow position: | chr23:26986524-26986281 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 182 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 21, 75 |
| Conread position: | 1-243 |
| Cow position: | chr23:4338857-4338620 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 186 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 18, 181 |
| Conread position: | 1-243 |
| Cow position: | chr23:11473759-11473515 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 89 |
| Conread position: | 1-243 |
| Cow position: | chr23:29626164-29626407 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 87 |
| Conread position: | 1-243 |
| Cow position: | chr23:39806623-39806863 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 196 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 85, 99 |
| Conread position: | 1-244 |
| Cow position: | chr23:353829-353598 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 17, 106 |
| Conread position: | 1-244 |
| Cow position: | chr23:1883143-1883386 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 100 |
| Conread position: | 1-244 |
| Cow position: | chr23:9599252-9599484 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 190 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 17, 86 |
| Conread position: | 1-244 |
| Cow position: | chr23:11045234-11045479 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 78 |
| Conread position: | 1-244 |
| Cow position: | chr23:14191301-14191546 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 15 |
| Conread position: | 1-244 |
| Cow position: | chr23:16664800-16664578 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 18, 71 |
| Conread position: | 1-244 |
| Cow position: | chr23:16881407-16881171 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 60 |
| Conread position: | 1-244 |
| Cow position: | chr23:20744839-20744601 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 187 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 22, 80 |
| Conread position: | 1-244 |
| Cow position: | chr23:29034063-29034310 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 1-244 |
| Cow position: | chr23:31493628-31493856 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 18, 82 |
| Conread position: | 1-244 |
| Cow position: | chr23:39778163-39778393 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 23, 68 |
| Conread position: | 1-244 |
| Cow position: | chr23:41285679-41285911 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 22, 40 |
| Conread position: | 2-219 |
| Cow position: | chr23:1290051-1290262 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 165, 21 |
| Conread position: | 2-221 |
| Cow position: | chr23:16237509-16237281 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 2-244 |
| Cow position: | chr23:6244836-6244596 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 160 |
| Conread position: | 3-172 |
| Cow position: | chr23:8063305-8063473 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 19, 43 |
| Conread position: | 3-204 |
| Cow position: | chr23:221822-222022 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 21, 70 |
| Conread position: | 3-219 |
| Cow position: | chr23:4980791-4980578 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 163, 93 |
| Conread position: | 3-244 |
| Cow position: | chr23:6179954-6179719 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 15, 94 |
| Conread position: | 3-244 |
| Cow position: | chr23:17404604-17404831 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 163, 19 |
| Conread position: | 6-188 |
| Cow position: | chr23:6767647-6767826 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 160, 7 |
| Conread position: | 6-217 |
| Cow position: | chr23:29242700-29242915 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 164 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 6-244 |
| Cow position: | chr23:7845044-7845285 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 215 |
| Conread position: | 7-217 |
| Cow position: | chr23:20057111-20056900 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 104 |
| Conread position: | 7-244 |
| Cow position: | chr23:1428573-1428803 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 160, 73 |
| Conread position: | 11-190 |
| Cow position: | chr23:8698203-8698379 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 11, 147 |
| Conread position: | 13-244 |
| Cow position: | chr23:6367368-6367602 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 135 |
| Conread position: | 14-211 |
| Cow position: | chr23:27544595-27544789 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 11, 85 |
| Conread position: | 16-244 |
| Cow position: | chr23:39775497-39775717 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 17-222 |
| Cow position: | chr23:40781093-40781295 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 153, 79 |
| Conread position: | 17-243 |
| Cow position: | chr23:33717777-33717548 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 0 |
| Conread position: | 23-209 |
| Cow position: | chr23:1585614-1585429 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 34, 18 |
| Conread position: | 23-244 |
| Cow position: | chr23:2502075-2501862 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 144, 10 |
| Conread position: | 31-218 |
| Cow position: | chr23:4504608-4504793 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 153, 134 |
| Conread position: | 31-221 |
| Cow position: | chr23:1489837-1490022 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 137, 48 |
| Conread position: | 32-222 |
| Cow position: | chr23:1068531-1068341 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 96, 59 |
| Conread position: | 37-217 |
| Cow position: | chr23:40648941-40648767 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 38-242 |
| Cow position: | chr23:21764705-21764910 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 128, 72 |
| Conread position: | 56-230 |
| Cow position: | chr23:5426233-5426411 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 62-211 |
| Cow position: | chr23:2488173-2488026 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 125, 101 |
| Conread position: | 71-244 |
| Cow position: | chr23:3282294-3282130 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 96, 11 |
| Conread position: | 82-244 |
| Cow position: | chr23:12334038-12334202 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 84, 13 |
| Conread position: | 85-217 |
| Cow position: | chr23:1767661-1767796 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 84, 45 |
| Conread position: | 86-221 |
| Cow position: | chr23:7360950-7361087 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 87, 14 |
| Conread position: | 102-244 |
| Cow position: | chr23:21502789-21502645 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 88, 68 |
| Conread position: | 110-244 |
| Cow position: | chr23:24809808-24809671 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 55, 15 |
| Conread position: | 111-244 |
| Cow position: | chr23:3409047-3408919 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 102, 55 |
| Conread position: | 129-244 |
| Cow position: | chr23:5795353-5795471 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 130-242 |
| Cow position: | chr23:1438173-1438281 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 132-243 |
| Cow position: | chr23:40334269-40334156 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 92 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 35, 95 |
Show alignments to all cow chromosomes.