Cow genome map
| Conread name: | rpigcf0_020330.y1 |
| Conread position: | 1-157 |
| Cow position: | chr24:15288581-15288737 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 22, 148 |
| Conread position: | 1-167 |
| Cow position: | chr24:40974732-40974887 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 22, 81 |
| Conread position: | 1-182 |
| Cow position: | chr24:18732399-18732219 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 23, 71 |
| Conread position: | 1-186 |
| Cow position: | chr24:20923321-20923493 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1-194 |
| Cow position: | chr24:39955322-39955126 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1-199 |
| Cow position: | chr24:2730846-2730651 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 22, 96 |
| Conread position: | 1-201 |
| Cow position: | chr24:27465848-27465653 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 16, 80 |
| Conread position: | 1-210 |
| Cow position: | chr24:30860361-30860570 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 64, 56 |
| Conread position: | 1-211 |
| Cow position: | chr24:27967804-27968012 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 22, 96 |
| Conread position: | 1-214 |
| Cow position: | chr24:20874400-20874617 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 1-214 |
| Cow position: | chr24:34742473-34742689 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 14, 49 |
| Conread position: | 1-214 |
| Cow position: | chr24:43200550-43200342 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 22, 95 |
| Conread position: | 1-218 |
| Cow position: | chr24:29063922-29063713 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 21, 57 |
| Conread position: | 1-218 |
| Cow position: | chr24:29170689-29170910 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 17, 93 |
| Conread position: | 1-219 |
| Cow position: | chr24:23695171-23694953 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 169 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 17, 9 |
| Conread position: | 1-220 |
| Cow position: | chr24:3165545-3165758 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 17, 94 |
| Conread position: | 1-220 |
| Cow position: | chr24:18113511-18113735 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-221 |
| Cow position: | chr24:25677758-25677984 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 22, 72 |
| Conread position: | 1-221 |
| Cow position: | chr24:25991421-25991218 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 169, 32 |
| Conread position: | 1-222 |
| Cow position: | chr24:1269528-1269736 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 22, 82 |
| Conread position: | 1-222 |
| Cow position: | chr24:39681579-39681799 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 18, 94 |
| Conread position: | 1-225 |
| Cow position: | chr24:5141665-5141891 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 213 |
| Conread position: | 1-232 |
| Cow position: | chr24:35795016-35794782 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-233 |
| Cow position: | chr24:28062669-28062907 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 206 |
| Conread position: | 1-233 |
| Cow position: | chr24:30177960-30178192 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 181 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 18, 82 |
| Conread position: | 1-235 |
| Cow position: | chr24:25245773-25245997 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 24, 45 |
| Conread position: | 1-237 |
| Cow position: | chr24:14746361-14746595 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 123, 22 |
| Conread position: | 1-242 |
| Cow position: | chr24:11876607-11876851 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 100 |
| Conread position: | 1-243 |
| Cow position: | chr24:5754565-5754800 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 71 |
| Conread position: | 1-244 |
| Cow position: | chr24:211705-211952 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1-244 |
| Cow position: | chr24:7001345-7001101 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 213 |
| Conread position: | 1-244 |
| Cow position: | chr24:15246912-15246678 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 20, 95 |
| Conread position: | 1-244 |
| Cow position: | chr24:17311485-17311252 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 185 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 23, 105 |
| Conread position: | 1-244 |
| Cow position: | chr24:17860527-17860293 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 190 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 17, 82 |
| Conread position: | 1-244 |
| Cow position: | chr24:24250456-24250696 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 193 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 19, 92 |
| Conread position: | 1-244 |
| Cow position: | chr24:25885434-25885193 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 22, 75 |
| Conread position: | 1-244 |
| Cow position: | chr24:28303624-28303400 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-244 |
| Cow position: | chr24:28319478-28319244 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 21, 83 |
| Conread position: | 1-244 |
| Cow position: | chr24:31811909-31812154 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 0 |
| Conread position: | 1-244 |
| Cow position: | chr24:33153506-33153742 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 82 |
| Conread position: | 1-244 |
| Cow position: | chr24:35836514-35836277 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 22, 84 |
| Conread position: | 1-244 |
| Cow position: | chr24:36404423-36404177 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 31 |
| Conread position: | 1-244 |
| Cow position: | chr24:39850153-39849921 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 22, 37 |
| Conread position: | 1-244 |
| Cow position: | chr24:43028602-43028363 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 22, 145 |
| Conread position: | 2-209 |
| Cow position: | chr24:18374499-18374707 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 164 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 23, 195 |
| Conread position: | 2-214 |
| Cow position: | chr24:32205069-32204857 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 167 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 21, 96 |
| Conread position: | 2-232 |
| Cow position: | chr24:33238824-33238588 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 16, 100 |
| Conread position: | 2-243 |
| Cow position: | chr24:30900502-30900263 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 20, 5 |
| Conread position: | 2-244 |
| Cow position: | chr24:201908-201672 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 189 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 16, 34 |
| Conread position: | 2-244 |
| Cow position: | chr24:2402649-2402403 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 194 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 59, 21 |
| Conread position: | 2-244 |
| Cow position: | chr24:28496863-28496617 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 203 |
| Conread position: | 2-244 |
| Cow position: | chr24:29180626-29180855 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 189 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 164, 73 |
| Conread position: | 3-225 |
| Cow position: | chr24:42380976-42380763 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 19, 40 |
| Conread position: | 3-242 |
| Cow position: | chr24:17363919-17363685 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 81, 20 |
| Conread position: | 3-244 |
| Cow position: | chr24:31816311-31816543 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 183 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 16, 123 |
| Conread position: | 6-242 |
| Cow position: | chr24:39483202-39483441 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 211 |
| Conread position: | 7-222 |
| Cow position: | chr24:11734452-11734665 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 165 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 16, 160 |
| Conread position: | 7-243 |
| Cow position: | chr24:27290607-27290835 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 139, 19 |
| Conread position: | 11-244 |
| Cow position: | chr24:16556901-16556672 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 12, 72 |
| Conread position: | 12-244 |
| Cow position: | chr24:11886894-11887125 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 5 |
| Conread position: | 17-219 |
| Cow position: | chr24:27906175-27906382 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 128, 147 |
| Conread position: | 17-219 |
| Cow position: | chr24:39226739-39226942 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 150, 140 |
| Conread position: | 17-244 |
| Cow position: | chr24:27608357-27608133 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 173, 65 |
| Conread position: | 19-244 |
| Cow position: | chr24:31324024-31324250 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 143, 11 |
| Conread position: | 26-244 |
| Cow position: | chr24:6487670-6487884 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 170 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 163, 46 |
| Conread position: | 26-244 |
| Cow position: | chr24:27824214-27824427 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 139, 54 |
| Conread position: | 27-199 |
| Cow position: | chr24:18474997-18474823 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 139, 30 |
| Conread position: | 27-215 |
| Cow position: | chr24:20942920-20943105 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 143, 38 |
| Conread position: | 38-195 |
| Cow position: | chr24:18328934-18328778 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 128, 111 |
| Conread position: | 47-217 |
| Cow position: | chr24:28327312-28327146 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 120, 46 |
| Conread position: | 56-216 |
| Cow position: | chr24:39842073-39841910 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 56-223 |
| Cow position: | chr24:39833736-39833567 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 111, 164 |
| Conread position: | 56-225 |
| Cow position: | chr24:29540131-29539959 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 145 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 57-224 |
| Cow position: | chr24:31359103-31359271 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 130, 113 |
| Conread position: | 63-220 |
| Cow position: | chr24:6132091-6131932 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 71-224 |
| Cow position: | chr24:28990360-28990509 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 118, 48 |
| Conread position: | 71-231 |
| Cow position: | chr24:28253501-28253661 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 99, 35 |
| Conread position: | 83-244 |
| Cow position: | chr24:30897735-30897571 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 85-214 |
| Cow position: | chr24:885878-885750 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 85, 25 |
| Conread position: | 93-223 |
| Cow position: | chr24:17938576-17938707 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 74, 18 |
| Conread position: | 106-244 |
| Cow position: | chr24:37037725-37037865 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 64, 38 |
| Conread position: | 108-244 |
| Cow position: | chr24:23187089-23186954 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 82, 56 |
| Conread position: | 111-244 |
| Cow position: | chr24:18357222-18357087 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 123-244 |
| Cow position: | chr24:4615676-4615555 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 43, 80 |
Show alignments to all cow chromosomes.