Cow genome map

Conread name: rpigcf0_020330.y1

Conread position: 1-148
Cow position: chr25:9842746-9842894 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 126
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 17, 58

Conread position: 1-172
Cow position: chr25:18935129-18934957 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 141
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 22, 99

Conread position: 1-186
Cow position: chr25:21266752-21266939 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 147
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 21, 98

Conread position: 1-193
Cow position: chr25:6003245-6003055 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 149
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 22, 158

Conread position: 1-196
Cow position: chr25:10010975-10010779 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 150
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 165, 176

Conread position: 1-197
Cow position: chr25:18448583-18448780 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 154
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 17, 143

Conread position: 1-197
Cow position: chr25:26238617-26238813 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 160
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 23, 102

Conread position: 1-201
Cow position: chr25:21209202-21209006 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 160
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 23, 167

Conread position: 1-206
Cow position: chr25:15319667-15319870 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 162
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 165, 81

Conread position: 1-211
Cow position: chr25:788015-788219 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 160
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 17, 53

Conread position: 1-213
Cow position: chr25:12778788-12778576 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 168

Conread position: 1-214
Cow position: chr25:12204216-12204430 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 168
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 21, 94

Conread position: 1-214
Cow position: chr25:32191417-32191628 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 168
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 23, 43

Conread position: 1-216
Cow position: chr25:15714627-15714833 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 170
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 18, 150

Conread position: 1-218
Cow position: chr25:33691300-33691519 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 167
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 165, 0

Conread position: 1-220
Cow position: chr25:2194693-2194908 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 172
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 169, 22

Conread position: 1-220
Cow position: chr25:9990344-9990134 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 171
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 17, 98

Conread position: 1-220
Cow position: chr25:11662073-11661849 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 0

Conread position: 1-221
Cow position: chr25:22314947-22315165 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 164
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 18, 95

Conread position: 1-221
Cow position: chr25:26700786-26700998 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 166
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 210, 24

Conread position: 1-222
Cow position: chr25:5837220-5836999 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 162

Conread position: 1-222
Cow position: chr25:12817119-12817344 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 166
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 167, 0

Conread position: 1-222
Cow position: chr25:35344784-35344997 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 164
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 22, 82

Conread position: 1-222
Cow position: chr25:35347651-35347876 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 0

Conread position: 1-222
Cow position: chr25:36081620-36081846 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 0

Conread position: 1-224
Cow position: chr25:12261148-12260924 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 171
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 16, 42

Conread position: 1-225
Cow position: chr25:7216574-7216801 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 99

Conread position: 1-230
Cow position: chr25:41351459-41351228 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 160
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 20, 87

Conread position: 1-233
Cow position: chr25:7306044-7306282 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 181
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 22, 0

Conread position: 1-235
Cow position: chr25:35625425-35625203 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 177
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 169, 22

Conread position: 1-237
Cow position: chr25:18721358-18721140 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 174
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 64, 0

Conread position: 1-238
Cow position: chr25:3992536-3992766 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 182
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 22, 164

Conread position: 1-238
Cow position: chr25:12117240-12117018 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 178
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 22, 36

Conread position: 1-239
Cow position: chr25:6474352-6474109 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 184
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 169, 147

Conread position: 1-240
Cow position: chr25:2414579-2414798 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 173
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 165, 14

Conread position: 1-242
Cow position: chr25:35340078-35340315 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 181
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 17, 82

Conread position: 1-244
Cow position: chr25:5341397-5341642 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 182
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 78, 106

Conread position: 1-244
Cow position: chr25:6683315-6683075 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 185
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 20, 80

Conread position: 1-244
Cow position: chr25:7800882-7801128 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 1-244
Cow position: chr25:8120523-8120770 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 204

Conread position: 1-244
Cow position: chr25:8347255-8347498 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 106

Conread position: 1-244
Cow position: chr25:10330648-10330425 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 187
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 22, 33

Conread position: 1-244
Cow position: chr25:11437056-11436820 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 82

Conread position: 1-244
Cow position: chr25:15273436-15273660 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 186
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 17, 31

Conread position: 1-244
Cow position: chr25:20496286-20496527 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 178
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 19, 66

Conread position: 1-244
Cow position: chr25:20785835-20785599 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 191
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 166, 22

Conread position: 1-244
Cow position: chr25:22531033-22531270 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 78

Conread position: 1-244
Cow position: chr25:24572819-24573055 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 184
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 22, 90

Conread position: 1-244
Cow position: chr25:36037034-36036792 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 96

Conread position: 2-222
Cow position: chr25:10366005-10365785 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 87

Conread position: 2-222
Cow position: chr25:12239392-12239180 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 165
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 164, 30

Conread position: 2-244
Cow position: chr25:10156338-10156559 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 183
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 21, 99

Conread position: 2-244
Cow position: chr25:16319385-16319153 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 99

Conread position: 2-244
Cow position: chr25:30279461-30279221 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 130

Conread position: 3-211
Cow position: chr25:12824266-12824063 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 165
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 20, 90

Conread position: 3-221
Cow position: chr25:36761854-36762072 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 161
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 21, 80

Conread position: 3-222
Cow position: chr25:24669682-24669469 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 79

Conread position: 3-243
Cow position: chr25:25051636-25051392 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 113

Conread position: 3-244
Cow position: chr25:20023649-20023399 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 190
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 20, 244

Conread position: 4-244
Cow position: chr25:15694732-15694969 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 185
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 14, 84

Conread position: 6-214
Cow position: chr25:19679093-19679303 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 153

Conread position: 6-221
Cow position: chr25:13099729-13099509 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 149
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 18, 0

Conread position: 6-244
Cow position: chr25:19129604-19129842 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 188
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 11, 33

Conread position: 9-223
Cow position: chr25:16922040-16921828 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 179

Conread position: 9-244
Cow position: chr25:7641699-7641463 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 176
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 9, 22

Conread position: 11-220
Cow position: chr25:11139402-11139614 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 149
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 11, 56

Conread position: 11-221
Cow position: chr25:1735560-1735349 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 168
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 12, 136

Conread position: 11-222
Cow position: chr25:20069476-20069692 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 160
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 7, 0

Conread position: 11-244
Cow position: chr25:2136108-2136346 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 184
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 112, 71

Conread position: 11-244
Cow position: chr25:11054680-11054891 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 175
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 156, 12

Conread position: 17-200
Cow position: chr25:10746663-10746843 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 140
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 151, 77

Conread position: 17-214
Cow position: chr25:7329307-7329506 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 161
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 153, 164

Conread position: 17-218
Cow position: chr25:8560632-8560827 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 145
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 149, 39

Conread position: 17-244
Cow position: chr25:15377096-15377314 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 173
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 194, 65

Conread position: 18-222
Cow position: chr25:61421-61626 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 156
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 126, 87

Conread position: 19-220
Cow position: chr25:15286775-15286576 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 155
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 125, 81

Conread position: 24-241
Cow position: chr25:36033206-36033424 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 166
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 144, 90

Conread position: 26-236
Cow position: chr25:34169726-34169927 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 159
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 206, 70

Conread position: 27-244
Cow position: chr25:12319566-12319356 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 166
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 13, 56

Conread position: 28-206
Cow position: chr25:25861586-25861406 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 134
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 7, 19

Conread position: 31-156
Cow position: chr25:33556744-33556865 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 99
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 51, 0

Conread position: 31-220
Cow position: chr25:11978921-11978737 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 144
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 162, 6

Conread position: 34-244
Cow position: chr25:12899535-12899746 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 170
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 135, 15

Conread position: 40-222
Cow position: chr25:35076890-35076722 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 136
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 17, 0

Conread position: 42-238
Cow position: chr25:2624592-2624787 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 155
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 11, 173

Conread position: 43-218
Cow position: chr25:9754295-9754128 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 133
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 101, 18

Conread position: 44-223
Cow position: chr25:26090025-26089847 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 140
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 17, 57

Conread position: 48-244
Cow position: chr25:13272363-13272556 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 150
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 139, 104

Conread position: 56-222
Cow position: chr25:12521159-12520992 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 43, 55

Conread position: 60-244
Cow position: chr25:7750256-7750439 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 140
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 47, 109

Conread position: 67-244
Cow position: chr25:4681046-4681219 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 135
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 121, 99

Conread position: 76-235
Cow position: chr25:23571079-23570925 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 68, 92

Conread position: 85-244
Cow position: chr25:33267550-33267713 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 129
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 54, 75

Conread position: 94-219
Cow position: chr25:30065044-30064924 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 73, 86

Conread position: 94-232
Cow position: chr25:41151124-41150985 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 72, 84

Conread position: 95-244
Cow position: chr25:26679065-26679213 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 72, 132

Conread position: 108-237
Cow position: chr25:21668096-21668228 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 105
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 58, 0

Conread position: 110-244
Cow position: chr25:12609197-12609330 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 108
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 56, 73

Conread position: 125-233
Cow position: chr25:7449675-7449787 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 94
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 42, 24

Show alignments to all cow chromosomes.