Cow genome map

Conread name: rpigcf0_020330.y1

Conread position: 1-205
Cow position: chr27:22179589-22179788 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 163
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 24, 82

Conread position: 1-206
Cow position: chr27:1903272-1903062 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 153
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 17, 145

Conread position: 1-214
Cow position: chr27:815573-815361 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 82

Conread position: 1-214
Cow position: chr27:27038636-27038843 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 165
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 139, 80

Conread position: 1-219
Cow position: chr27:19388227-19388007 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 175
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 28, 209

Conread position: 1-220
Cow position: chr27:27632401-27632617 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 166
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 22, 110

Conread position: 1-221
Cow position: chr27:11255721-11255508 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 164
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 17, 82

Conread position: 1-221
Cow position: chr27:12429616-12429390 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 201

Conread position: 1-221
Cow position: chr27:15319660-15319438 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 157
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 22, 147

Conread position: 1-221
Cow position: chr27:15858883-15859099 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 99

Conread position: 1-221
Cow position: chr27:19718128-19717912 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 22

Conread position: 1-222
Cow position: chr27:14670174-14670400 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 25

Conread position: 1-222
Cow position: chr27:27259816-27259597 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 161
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 141, 87

Conread position: 1-222
Cow position: chr27:27388820-27389031 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 164
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 21, 82

Conread position: 1-222
Cow position: chr27:30561120-30560901 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 162
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 186, 100

Conread position: 1-223
Cow position: chr27:10307087-10307316 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 167
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 23, 126

Conread position: 1-223
Cow position: chr27:30527374-30527164 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 170
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 211, 93

Conread position: 1-225
Cow position: chr27:7412591-7412368 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 175
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 24, 184

Conread position: 1-231
Cow position: chr27:13198124-13197896 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 176
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 188, 153

Conread position: 1-233
Cow position: chr27:4819504-4819724 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 173
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 188, 14

Conread position: 1-237
Cow position: chr27:16871711-16871942 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 186
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 166, 23

Conread position: 1-239
Cow position: chr27:12246868-12246629 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 173
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 23, 111

Conread position: 1-242
Cow position: chr27:435444-435202 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 165
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 65, 53

Conread position: 1-243
Cow position: chr27:299175-299412 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 181
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 19, 158

Conread position: 1-243
Cow position: chr27:30792729-30792970 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 183
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 189, 132

Conread position: 1-244
Cow position: chr27:16284680-16284442 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 186
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 166, 190

Conread position: 1-244
Cow position: chr27:17397241-17397487 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 22

Conread position: 1-244
Cow position: chr27:20067771-20068010 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 178
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 17, 11

Conread position: 1-244
Cow position: chr27:20641138-20641368 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 188
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 23, 71

Conread position: 1-244
Cow position: chr27:22171506-22171264 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 30

Conread position: 1-244
Cow position: chr27:23483431-23483191 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 189
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 22, 84

Conread position: 1-244
Cow position: chr27:24014533-24014772 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 101

Conread position: 1-244
Cow position: chr27:26643881-26643651 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 181
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 22, 64

Conread position: 1-244
Cow position: chr27:27449226-27449468 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 195
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 22, 80

Conread position: 1-244
Cow position: chr27:27528153-27528388 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 182
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 22, 92

Conread position: 1-244
Cow position: chr27:28164203-28164436 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 193
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 18, 57

Conread position: 1-244
Cow position: chr27:28207006-28206766 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 179

Conread position: 1-244
Cow position: chr27:30551204-30550962 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 94

Conread position: 2-190
Cow position: chr27:29493710-29493891 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 143
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 164, 94

Conread position: 2-218
Cow position: chr27:18593475-18593260 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 164
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 168, 21

Conread position: 2-223
Cow position: chr27:1498521-1498302 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 70

Conread position: 2-223
Cow position: chr27:27843785-27844011 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 176
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 21, 147

Conread position: 2-244
Cow position: chr27:30856184-30856417 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 171
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 17, 52

Conread position: 3-215
Cow position: chr27:26807357-26807569 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 162
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 15, 98

Conread position: 3-216
Cow position: chr27:12516405-12516186 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 160
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 20, 98

Conread position: 3-221
Cow position: chr27:22035167-22035387 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 3-222
Cow position: chr27:4812671-4812893 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 0

Conread position: 3-223
Cow position: chr27:23472464-23472242 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 178

Conread position: 3-244
Cow position: chr27:7212516-7212746 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 181
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 16, 37

Conread position: 3-244
Cow position: chr27:15454419-15454175 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 120

Conread position: 3-244
Cow position: chr27:20757852-20758078 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 170
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 212, 20

Conread position: 4-202
Cow position: chr27:29400022-29399824 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 155
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 66, 26

Conread position: 4-244
Cow position: chr27:19685509-19685746 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 95

Conread position: 5-244
Cow position: chr27:26984546-26984314 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 177
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 17, 74

Conread position: 6-217
Cow position: chr27:29251083-29250870 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 162
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 20, 0

Conread position: 6-237
Cow position: chr27:4664673-4664450 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 170
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 17, 89

Conread position: 7-178
Cow position: chr27:23558183-23558355 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 8, 0

Conread position: 7-200
Cow position: chr27:23632802-23632605 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 145
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 11, 32

Conread position: 7-239
Cow position: chr27:28061560-28061789 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 178
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 14, 78

Conread position: 7-243
Cow position: chr27:20549490-20549741 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 17, 185

Conread position: 7-244
Cow position: chr27:21668923-21669150 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 187
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 14, 25

Conread position: 7-244
Cow position: chr27:22547204-22547440 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 16

Conread position: 8-244
Cow position: chr27:4673222-4672983 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 97

Conread position: 9-211
Cow position: chr27:8062158-8062354 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 150
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 97, 14

Conread position: 12-244
Cow position: chr27:30843881-30844111 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 172
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 9, 79

Conread position: 17-219
Cow position: chr27:13841566-13841364 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 154
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 127, 19

Conread position: 17-235
Cow position: chr27:25676418-25676200 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 150
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 149, 77

Conread position: 18-221
Cow position: chr27:30988989-30988782 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 160
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 14, 93

Conread position: 18-244
Cow position: chr27:26151210-26150987 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 172
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 153, 76

Conread position: 23-244
Cow position: chr27:8353662-8353443 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 168
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 166, 193

Conread position: 36-244
Cow position: chr27:26426381-26426174 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 159
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 130, 184

Conread position: 37-244
Cow position: chr27:15408872-15409069 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 156
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 183, 52

Conread position: 42-173
Cow position: chr27:26322520-26322388 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 111
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 124, 0

Conread position: 46-244
Cow position: chr27:27460410-27460605 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 146
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 120, 11

Conread position: 47-244
Cow position: chr27:29431622-29431431 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 147
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 153, 0

Conread position: 52-244
Cow position: chr27:154525-154330 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 145
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 114, 0

Conread position: 56-188
Cow position: chr27:13375879-13376006 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 114, 37

Conread position: 62-197
Cow position: chr27:20548330-20548464 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 103
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 103, 28

Conread position: 64-244
Cow position: chr27:427117-426936 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 144
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 98, 140

Conread position: 66-220
Cow position: chr27:16589570-16589724 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 126
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 102, 40

Conread position: 67-244
Cow position: chr27:17331644-17331463 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 139
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 100, 0

Conread position: 68-244
Cow position: chr27:20789239-20789412 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 139
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 99, 30

Conread position: 77-244
Cow position: chr27:9697912-9697743 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 122
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 90, 10

Conread position: 84-220
Cow position: chr27:22569898-22569765 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 112
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 82, 16

Conread position: 85-242
Cow position: chr27:16103931-16103776 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 87, 31

Conread position: 103-244
Cow position: chr27:16626006-16625864 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 114
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 66, 27

Conread position: 105-244
Cow position: chr27:22386977-22386835 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 61, 126

Conread position: 111-220
Cow position: chr27:20481276-20481387 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 50, 0

Conread position: 123-244
Cow position: chr27:23511079-23510954 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 103
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 47, 0

Show alignments to all cow chromosomes.