Cow genome map

Conread name: rpigcf0_020330.y1

Conread position: 1-156
Cow position: chr29:21665717-21665869 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 128
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 23, 81

Conread position: 1-172
Cow position: chr29:40902972-40902804 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 129
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 22, 27

Conread position: 1-178
Cow position: chr29:18085337-18085512 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 144
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 17, 115

Conread position: 1-206
Cow position: chr29:17109717-17109919 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 165
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 18, 95

Conread position: 1-209
Cow position: chr29:27007865-27008071 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 152
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 20, 94

Conread position: 1-210
Cow position: chr29:961666-961880 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 159
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 16, 106

Conread position: 1-211
Cow position: chr29:29477285-29477077 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 150
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 20, 82

Conread position: 1-212
Cow position: chr29:34745907-34745703 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 163
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 69, 82

Conread position: 1-213
Cow position: chr29:18878754-18878539 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 156
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 25, 0

Conread position: 1-214
Cow position: chr29:4804980-4805192 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 164
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 23, 106

Conread position: 1-218
Cow position: chr29:29475500-29475289 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 148
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 188, 56

Conread position: 1-219
Cow position: chr29:4625246-4625032 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 168
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 23, 71

Conread position: 1-219
Cow position: chr29:15738597-15738377 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 160
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 18, 42

Conread position: 1-220
Cow position: chr29:94798-94588 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 169
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 142, 22

Conread position: 1-220
Cow position: chr29:11684759-11684972 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 164
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 18, 104

Conread position: 1-220
Cow position: chr29:15944316-15944536 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 164
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 17, 100

Conread position: 1-220
Cow position: chr29:25088500-25088716 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 163
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 22, 82

Conread position: 1-221
Cow position: chr29:26734780-26734995 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 168
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 21, 82

Conread position: 1-221
Cow position: chr29:36530610-36530833 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 1-222
Cow position: chr29:585029-585243 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 166
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 169, 93

Conread position: 1-222
Cow position: chr29:10456805-10456591 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 170
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 166, 81

Conread position: 1-222
Cow position: chr29:13553879-13554103 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 168
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 22, 100

Conread position: 1-222
Cow position: chr29:25333706-25333495 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 166
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 83, 110

Conread position: 1-224
Cow position: chr29:28868378-28868606 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 176
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 22, 0

Conread position: 1-239
Cow position: chr29:8926712-8926483 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 187
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 17, 149

Conread position: 1-242
Cow position: chr29:11634569-11634810 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 170
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 21, 57

Conread position: 1-242
Cow position: chr29:45005869-45005642 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 185
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 169, 22

Conread position: 1-243
Cow position: chr29:10838697-10838941 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 175
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 16, 94

Conread position: 1-244
Cow position: chr29:465655-465405 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 182
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 17, 166

Conread position: 1-244
Cow position: chr29:4480425-4480183 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 25

Conread position: 1-244
Cow position: chr29:9709446-9709681 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 191
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 165, 74

Conread position: 1-244
Cow position: chr29:10058780-10058548 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 177
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 22, 81

Conread position: 1-244
Cow position: chr29:22613182-22613417 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 188
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 166, 20

Conread position: 1-244
Cow position: chr29:23874203-23874447 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 174
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 19, 131

Conread position: 1-244
Cow position: chr29:26778631-26778870 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 186
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 22, 147

Conread position: 1-244
Cow position: chr29:31594368-31594140 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 186
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 18, 81

Conread position: 1-244
Cow position: chr29:32290349-32290596 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 177
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 17, 96

Conread position: 1-244
Cow position: chr29:35501901-35501667 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 185
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 169, 97

Conread position: 1-244
Cow position: chr29:41811830-41811600 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 187
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 187, 73

Conread position: 2-219
Cow position: chr29:21000389-21000608 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 58

Conread position: 2-221
Cow position: chr29:29974789-29975010 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 58

Conread position: 2-242
Cow position: chr29:17607164-17607403 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 164

Conread position: 2-244
Cow position: chr29:1556680-1556919 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 183
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 16, 95

Conread position: 2-244
Cow position: chr29:7408141-7407898 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 180
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 22, 145

Conread position: 3-216
Cow position: chr29:11562363-11562574 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 114

Conread position: 3-220
Cow position: chr29:5919576-5919356 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 168
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 15, 163

Conread position: 3-221
Cow position: chr29:28197259-28197041 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 172
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 21, 106

Conread position: 3-239
Cow position: chr29:40165991-40166222 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 181
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 20, 73

Conread position: 3-244
Cow position: chr29:4328183-4328405 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 183
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 20, 40

Conread position: 3-244
Cow position: chr29:22162504-22162262 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 98

Conread position: 5-219
Cow position: chr29:20903537-20903322 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 141

Conread position: 6-193
Cow position: chr29:4691934-4691741 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 146
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 17, 148

Conread position: 6-222
Cow position: chr29:4065841-4066053 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 170
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 161, 5

Conread position: 8-217
Cow position: chr29:10235361-10235170 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 156
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 16, 48

Conread position: 10-244
Cow position: chr29:26615969-26615733 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 182
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 14, 91

Conread position: 11-221
Cow position: chr29:6472074-6472281 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 154
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 177, 11

Conread position: 15-222
Cow position: chr29:26986706-26986896 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 152
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 151, 16

Conread position: 16-235
Cow position: chr29:1395368-1395578 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 161
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 154, 52

Conread position: 16-244
Cow position: chr29:27858554-27858782 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 157
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 123, 64

Conread position: 17-219
Cow position: chr29:2623716-2623517 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 146
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 170, 148

Conread position: 17-244
Cow position: chr29:22714964-22714735 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 197

Conread position: 18-244
Cow position: chr29:24103784-24103552 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 185

Conread position: 21-244
Cow position: chr29:40763917-40763693 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 164
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 98, 142

Conread position: 23-235
Cow position: chr29:39642946-39643156 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 168
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 116, 64

Conread position: 30-177
Cow position: chr29:23155027-23155172 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 117
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 135, 0

Conread position: 30-217
Cow position: chr29:40096733-40096927 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 148
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 111, 0

Conread position: 31-211
Cow position: chr29:2532839-2533016 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 141
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 158, 137

Conread position: 36-244
Cow position: chr29:28446477-28446261 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 162
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 131, 0

Conread position: 43-211
Cow position: chr29:28166428-28166258 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 125
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 46, 0

Conread position: 43-214
Cow position: chr29:31489109-31489281 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 129
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 127, 42

Conread position: 45-240
Cow position: chr29:709331-709136 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 143
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 102, 37

Conread position: 56-244
Cow position: chr29:9718970-9718780 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 143
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 129, 0

Conread position: 56-244
Cow position: chr29:25091912-25092101 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 144
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 110, 10

Conread position: 62-225
Cow position: chr29:32211251-32211087 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 139
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 104, 0

Conread position: 63-244
Cow position: chr29:44988972-44988795 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 140
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 77, 47

Conread position: 65-198
Cow position: chr29:39329786-39329652 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 106
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 102, 0

Conread position: 65-211
Cow position: chr29:4334539-4334683 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 119
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 80, 16

Conread position: 76-244
Cow position: chr29:27588743-27588911 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 128
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 9, 25

Conread position: 82-243
Cow position: chr29:44682272-44682110 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 108, 84

Conread position: 86-244
Cow position: chr29:23244051-23243890 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 129
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 81, 0

Conread position: 92-244
Cow position: chr29:31674465-31674620 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 123
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 75, 0

Show alignments to all cow chromosomes.