Cow genome map

Conread name: rpigcf0_020330.y1

Conread position: 1-192
Cow position: chr6:55366535-55366339 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 145
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 22, 0

Conread position: 1-205
Cow position: chr6:28811206-28811003 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 152
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 25, 66

Conread position: 1-211
Cow position: chr6:35181465-35181262 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 164
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 22, 82

Conread position: 1-213
Cow position: chr6:2012807-2013019 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 94

Conread position: 1-214
Cow position: chr6:4383281-4383487 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 171
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 164, 81

Conread position: 1-214
Cow position: chr6:9736851-9736649 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 169
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 62, 22

Conread position: 1-214
Cow position: chr6:38853870-38853654 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 161

Conread position: 1-217
Cow position: chr6:8209801-8209595 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 160
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 20, 98

Conread position: 1-217
Cow position: chr6:14839238-14839022 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 164
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 156, 30

Conread position: 1-217
Cow position: chr6:52248345-52248127 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 169
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 165, 24

Conread position: 1-218
Cow position: chr6:7824551-7824768 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 161
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 186, 16

Conread position: 1-219
Cow position: chr6:38218460-38218675 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 94

Conread position: 1-219
Cow position: chr6:53025010-53024800 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 163
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 22, 104

Conread position: 1-219
Cow position: chr6:63406466-63406677 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 149
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 98, 56

Conread position: 1-220
Cow position: chr6:2582663-2582878 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 166
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 23, 14

Conread position: 1-220
Cow position: chr6:15305374-15305582 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 175
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 165, 22

Conread position: 1-220
Cow position: chr6:21542108-21542327 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 173
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 22, 100

Conread position: 1-220
Cow position: chr6:28977243-28977037 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 173
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 25, 96

Conread position: 1-220
Cow position: chr6:52556686-52556467 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 158
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 22, 37

Conread position: 1-222
Cow position: chr6:13688023-13687805 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 176
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 22, 96

Conread position: 1-222
Cow position: chr6:17997527-17997307 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 174
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 20, 94

Conread position: 1-222
Cow position: chr6:20098176-20097956 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 82

Conread position: 1-222
Cow position: chr6:38771084-38771296 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 172
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 165, 26

Conread position: 1-222
Cow position: chr6:49398828-49398605 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 86

Conread position: 1-223
Cow position: chr6:15923209-15922989 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 175
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 170, 24

Conread position: 1-223
Cow position: chr6:30786360-30786144 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 170
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 23, 82

Conread position: 1-225
Cow position: chr6:36196002-36196224 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 173
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 22, 90

Conread position: 1-230
Cow position: chr6:899496-899274 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 182
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 17, 46

Conread position: 1-233
Cow position: chr6:6264432-6264663 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 171
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 60, 87

Conread position: 1-234
Cow position: chr6:16410984-16411214 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 187
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 138, 93

Conread position: 1-234
Cow position: chr6:54132606-54132832 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 78

Conread position: 1-236
Cow position: chr6:60350511-60350274 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 228

Conread position: 1-238
Cow position: chr6:52478639-52478393 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 226

Conread position: 1-241
Cow position: chr6:8965878-8966119 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 27

Conread position: 1-242
Cow position: chr6:32125855-32126091 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 177
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 17, 110

Conread position: 1-242
Cow position: chr6:47540314-47540559 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 212

Conread position: 1-243
Cow position: chr6:44194757-44194521 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 88

Conread position: 1-243
Cow position: chr6:45690805-45690574 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 186
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 32, 168

Conread position: 1-244
Cow position: chr6:5609652-5609416 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 185
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 22, 102

Conread position: 1-244
Cow position: chr6:7131083-7130859 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 181
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 22, 82

Conread position: 1-244
Cow position: chr6:18961734-18961486 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 192
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 112, 70

Conread position: 1-244
Cow position: chr6:23248175-23247933 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 166

Conread position: 1-244
Cow position: chr6:24961933-24962172 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 162

Conread position: 1-244
Cow position: chr6:31535782-31535540 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 162

Conread position: 1-244
Cow position: chr6:32287408-32287667 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 195
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 12, 42

Conread position: 1-244
Cow position: chr6:35613621-35613393 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 180
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 29, 0

Conread position: 1-244
Cow position: chr6:36202616-36202850 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 184
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 22, 81

Conread position: 1-244
Cow position: chr6:39358552-39358316 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 187
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 166, 99

Conread position: 1-244
Cow position: chr6:51581471-51581223 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 0

Conread position: 1-244
Cow position: chr6:53651828-53652070 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 101

Conread position: 1-244
Cow position: chr6:54991204-54990972 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 187
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 165, 25

Conread position: 1-244
Cow position: chr6:61269118-61269341 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 184
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 19, 75

Conread position: 1-244
Cow position: chr6:67950747-67950984 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 183
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 22, 93

Conread position: 2-180
Cow position: chr6:20329810-20329991 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 143
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 16, 0

Conread position: 2-218
Cow position: chr6:24031164-24031376 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 172
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 20, 180

Conread position: 2-225
Cow position: chr6:26728737-26728514 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 73

Conread position: 2-231
Cow position: chr6:10635966-10636193 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 173
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 164, 77

Conread position: 2-239
Cow position: chr6:23532452-23532677 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 171
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 20, 88

Conread position: 2-244
Cow position: chr6:17414664-17414418 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 76

Conread position: 3-214
Cow position: chr6:1886872-1886663 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 165
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 15, 8

Conread position: 3-218
Cow position: chr6:46570910-46571122 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 167
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 162, 20

Conread position: 3-237
Cow position: chr6:1907329-1907562 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 172
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 18, 163

Conread position: 3-242
Cow position: chr6:130374-130134 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 0

Conread position: 4-217
Cow position: chr6:5114257-5114043 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 159
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 33, 92

Conread position: 4-219
Cow position: chr6:16103411-16103188 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 164
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 16, 79

Conread position: 4-221
Cow position: chr6:6460333-6460551 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 19

Conread position: 6-171
Cow position: chr6:1002442-1002277 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 132
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 12, 84

Conread position: 6-220
Cow position: chr6:28080104-28079889 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 160
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 14, 93

Conread position: 6-221
Cow position: chr6:31260780-31261007 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 165
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 12, 0

Conread position: 6-244
Cow position: chr6:14958556-14958313 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 183
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 15, 0

Conread position: 6-244
Cow position: chr6:47519841-47520082 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 5

Conread position: 8-244
Cow position: chr6:29210296-29210526 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 180
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 15, 71

Conread position: 12-217
Cow position: chr6:59069829-59069622 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 167
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 12-244
Cow position: chr6:21231335-21231553 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 178
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 11, 91

Conread position: 17-244
Cow position: chr6:16423504-16423731 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 99

Conread position: 18-220
Cow position: chr6:29484897-29485094 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 149
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 196, 17

Conread position: 24-220
Cow position: chr6:50577332-50577532 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 156
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 142, 0

Conread position: 27-191
Cow position: chr6:49410874-49410717 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 127
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 54, 0

Conread position: 27-211
Cow position: chr6:24004363-24004539 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 138
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 143, 22

Conread position: 30-206
Cow position: chr6:35993394-35993577 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 142
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 12, 0

Conread position: 30-244
Cow position: chr6:47574723-47574935 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 168
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 127, 66

Conread position: 35-242
Cow position: chr6:1499461-1499671 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 162
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 132, 79

Conread position: 37-244
Cow position: chr6:47640613-47640403 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 160
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 9, 191

Conread position: 42-244
Cow position: chr6:27888180-27888380 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 146
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 103, 9

Conread position: 50-220
Cow position: chr6:12543095-12542924 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 140
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 117, 44

Conread position: 52-244
Cow position: chr6:120079-120276 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 149
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 119, 91

Conread position: 56-244
Cow position: chr6:61608351-61608541 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 153
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 111, 163

Conread position: 59-238
Cow position: chr6:7128553-7128380 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 142
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 108, 23

Conread position: 63-242
Cow position: chr6:9219124-9219299 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 136
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 107, 31

Conread position: 64-230
Cow position: chr6:46283146-46282990 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 129
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 156, 36

Conread position: 65-244
Cow position: chr6:57571326-57571508 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 143
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 101, 166

Conread position: 79-244
Cow position: chr6:38640094-38640262 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 122
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 86, 0

Conread position: 84-244
Cow position: chr6:12829354-12829196 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 103, 27

Conread position: 90-244
Cow position: chr6:37376643-37376485 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 77, 0

Conread position: 93-244
Cow position: chr6:11192588-11192435 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 122
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 77, 7

Conread position: 129-244
Cow position: chr6:37332020-37332137 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 39, 72

Show alignments to all cow chromosomes.