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Cow genome map

           
Conread name:
           
rpigcf0_020369.y1
        

               
Conread position:
               
21-206
               

               
Cow position:
               
chr11:4322997-4323194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
23-178
               

               
Cow position:
               
chr11:19592497-19592334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
23-206
               

               
Cow position:
               
chr11:7924952-7924762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
119, 58
               

               
Conread position:
               
23-206
               

               
Cow position:
               
chr11:17321294-17321485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
23-206
               

               
Cow position:
               
chr11:18526260-18526065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
23-206
               

               
Cow position:
               
chr11:32198574-32198767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
114, 41
               

               
Conread position:
               
23-206
               

               
Cow position:
               
chr11:48672341-48672529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
23-206
               

               
Cow position:
               
chr11:54856267-54856463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
23-206
               

               
Cow position:
               
chr11:64029623-64029429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
23-208
               

               
Cow position:
               
chr11:1486237-1486037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
23-208
               

               
Cow position:
               
chr11:15641132-15641326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
23-208
               

               
Cow position:
               
chr11:29802921-29802731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
119, 74
               

               
Conread position:
               
23-208
               

               
Cow position:
               
chr11:31873200-31873395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
79, 45
               

               
Conread position:
               
23-214
               

               
Cow position:
               
chr11:11991578-11991781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
23-216
               

               
Cow position:
               
chr11:34412732-34412934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
114, 74
               

               
Conread position:
               
23-236
               

               
Cow position:
               
chr11:10294229-10294455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
24-216
               

               
Cow position:
               
chr11:38810703-38810509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
108, 116
               

               
Conread position:
               
27-209
               

               
Cow position:
               
chr11:18371793-18371611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
72, 105
               

               
Conread position:
               
29-192
               

               
Cow position:
               
chr11:19890523-19890695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
86, 41
               

               
Conread position:
               
29-195
               

               
Cow position:
               
chr11:53778255-53778429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
113, 60
               

               
Conread position:
               
29-197
               

               
Cow position:
               
chr11:32194523-32194349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
113, 72
               

               
Conread position:
               
29-202
               

               
Cow position:
               
chr11:41577366-41577185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
29-204
               

               
Cow position:
               
chr11:5229442-5229255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
71, 64
               

               
Conread position:
               
29-204
               

               
Cow position:
               
chr11:18389222-18389037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
29-204
               

               
Cow position:
               
chr11:53147901-53147713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
29-205
               

               
Cow position:
               
chr11:39115137-39115320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
112, 49
               

               
Conread position:
               
29-205
               

               
Cow position:
               
chr11:39152326-39152502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
91, 64
               

               
Conread position:
               
29-206
               

               
Cow position:
               
chr11:11534259-11534076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
112, 42
               

               
Conread position:
               
29-206
               

               
Cow position:
               
chr11:13894460-13894283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
29-206
               

               
Cow position:
               
chr11:16795509-16795325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
117, 68
               

               
Conread position:
               
29-206
               

               
Cow position:
               
chr11:18140880-18141065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
108, 153
               

               
Conread position:
               
29-206
               

               
Cow position:
               
chr11:27386701-27386512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
29-206
               

               
Cow position:
               
chr11:40250962-40250774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
29-206
               

               
Cow position:
               
chr11:42083122-42083307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
29-206
               

               
Cow position:
               
chr11:42292196-42292008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
113, 64
               

               
Conread position:
               
29-208
               

               
Cow position:
               
chr11:1849524-1849332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
99, 58
               

               
Conread position:
               
29-208
               

               
Cow position:
               
chr11:2309511-2309704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
29-208
               

               
Cow position:
               
chr11:8525464-8525280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
108, 42
               

               
Conread position:
               
29-208
               

               
Cow position:
               
chr11:17890083-17889896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
113, 21
               

               
Conread position:
               
29-208
               

               
Cow position:
               
chr11:18086699-18086509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
97, 172
               

               
Conread position:
               
29-208
               

               
Cow position:
               
chr11:38638764-38638954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
109, 68
               

               
Conread position:
               
29-208
               

               
Cow position:
               
chr11:48901431-48901248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
29-208
               

               
Cow position:
               
chr11:50153178-50152985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
113, 33
               

               
Conread position:
               
29-208
               

               
Cow position:
               
chr11:52297581-52297390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
113, 54
               

               
Conread position:
               
29-208
               

               
Cow position:
               
chr11:59702123-59702314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
29-208
               

               
Cow position:
               
chr11:64043888-64044072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
124, 51
               

               
Conread position:
               
29-208
               

               
Cow position:
               
chr11:69118938-69119133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
29-209
               

               
Cow position:
               
chr11:29916186-29916368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
66, 45
               

               
Conread position:
               
29-213
               

               
Cow position:
               
chr11:19787787-19787979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
113, 75
               

               
Conread position:
               
29-217
               

               
Cow position:
               
chr11:2091986-2092179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
29-217
               

               
Cow position:
               
chr11:30961753-30961952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
29-269
               

               
Cow position:
               
chr11:15373276-15373522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
113, 172
               

               
Conread position:
               
30-206
               

               
Cow position:
               
chr11:71391961-71391782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
118, 30
               

               
Conread position:
               
30-208
               

               
Cow position:
               
chr11:33413873-33414067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
30-208
               

               
Cow position:
               
chr11:36309770-36309580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
92, 75
               

               
Conread position:
               
30-208
               

               
Cow position:
               
chr11:44233997-44234184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
30-208
               

               
Cow position:
               
chr11:53130455-53130641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
112, 67
               

               
Conread position:
               
30-208
               

               
Cow position:
               
chr11:73478263-73478450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
31-206
               

               
Cow position:
               
chr11:84891103-84890924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
19, 74
               

               
Conread position:
               
31-208
               

               
Cow position:
               
chr11:44642640-44642456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
74, 81
               

               
Conread position:
               
32-191
               

               
Cow position:
               
chr11:63909999-63910161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
32-206
               

               
Cow position:
               
chr11:34615910-34616096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
32-207
               

               
Cow position:
               
chr11:77751124-77750939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
32-207
               

               
Cow position:
               
chr11:81931428-81931253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
46, 67
               

               
Conread position:
               
33-213
               

               
Cow position:
               
chr11:28843101-28843294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
34-208
               

               
Cow position:
               
chr11:37995484-37995303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
108, 35
               

               
Conread position:
               
35-200
               

               
Cow position:
               
chr11:40467479-40467302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
38-208
               

               
Cow position:
               
chr11:33294144-33293963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
88, 170
               

               
Conread position:
               
42-208
               

               
Cow position:
               
chr11:47165482-47165304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
70-210
               

               
Cow position:
               
chr11:36848622-36848763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
383-618
               

               
Cow position:
               
chr11:44234153-44234394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
15, 40
               

               
Conread position:
               
385-599
               

               
Cow position:
               
chr11:17493283-17493493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
386-618
               

               
Cow position:
               
chr11:73924757-73924527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
8, 90
               

               
Conread position:
               
387-617
               

               
Cow position:
               
chr11:79728863-79728630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
66, 33
               

               
Conread position:
               
387-618
               

               
Cow position:
               
chr11:51729094-51729325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
135, 101
               

               
Conread position:
               
389-578
               

               
Cow position:
               
chr11:47165332-47165147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
157, 122
               

               
Conread position:
               
389-592
               

               
Cow position:
               
chr11:4412207-4412014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
389-618
               

               
Cow position:
               
chr11:24937471-24937704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
31, 64
               

               
Conread position:
               
389-618
               

               
Cow position:
               
chr11:44036525-44036758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
30, 75
               

               
Conread position:
               
390-590
               

               
Cow position:
               
chr11:53778423-53778622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
63, 139
               

               
Conread position:
               
390-591
               

               
Cow position:
               
chr11:23128734-23128533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
22, 35
               

               
Conread position:
               
390-592
               

               
Cow position:
               
chr11:33341336-33341137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
145, 30
               

               
Conread position:
               
390-592
               

               
Cow position:
               
chr11:67747092-67747292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
30, 139
               

               
Conread position:
               
390-592
               

               
Cow position:
               
chr11:74316521-74316717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
136, 148
               

               
Conread position:
               
390-604
               

               
Cow position:
               
chr11:36238591-36238801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
31, 138
               

               
Conread position:
               
390-618
               

               
Cow position:
               
chr11:76114461-76114685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
30, 111
               

               
Conread position:
               
391-618
               

               
Cow position:
               
chr11:1849350-1849132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
201, 28
               

               
Conread position:
               
393-591
               

               
Cow position:
               
chr11:42296806-42296613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
393-592
               

               
Cow position:
               
chr11:59702299-59702494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
148, 27
               

               
Conread position:
               
394-535
               

               
Cow position:
               
chr11:36286509-36286650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
51, 31
               

               
Conread position:
               
396-618
               

               
Cow position:
               
chr11:27248308-27248529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
197, 24
               

               
Conread position:
               
398-599
               

               
Cow position:
               
chr11:61246641-61246443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
50, 33
               

               
Conread position:
               
398-617
               

               
Cow position:
               
chr11:20761664-20761885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
184, 22
               

               
Conread position:
               
398-618
               

               
Cow position:
               
chr11:27746742-27746962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
102, 22
               

               
Conread position:
               
399-526
               

               
Cow position:
               
chr11:19508114-19508240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
399-536
               

               
Cow position:
               
chr11:2925469-2925334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
126, 21
               

               
Conread position:
               
399-536
               

               
Cow position:
               
chr11:47899098-47899234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
399-538
               

               
Cow position:
               
chr11:25165261-25165400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
134, 21
               

               
Conread position:
               
399-546
               

               
Cow position:
               
chr11:31352751-31352605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
58, 21
               

               
Conread position:
               
399-546
               

               
Cow position:
               
chr11:50778192-50778340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
129, 21
               

               
Conread position:
               
399-562
               

               
Cow position:
               
chr11:63516645-63516806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
137, 21
               

               
Conread position:
               
399-565
               

               
Cow position:
               
chr11:47850845-47851007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
94, 21
               

               
Conread position:
               
399-582
               

               
Cow position:
               
chr11:42793154-42792975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
399-590
               

               
Cow position:
               
chr11:40818821-40818629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
50, 21
               

               
Conread position:
               
399-592
               

               
Cow position:
               
chr11:10620504-10620321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
399-592
               

               
Cow position:
               
chr11:18591613-18591426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
399-592
               

               
Cow position:
               
chr11:35154006-35153816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
399-592
               

               
Cow position:
               
chr11:35684676-35684493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
399-592
               

               
Cow position:
               
chr11:52297402-52297213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
399-592
               

               
Cow position:
               
chr11:69119121-69119301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
399-594
               

               
Cow position:
               
chr11:17968758-17968572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
399-595
               

               
Cow position:
               
chr11:25386882-25387077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
91, 22
               

               
Conread position:
               
399-601
               

               
Cow position:
               
chr11:25319872-25320073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
123, 22
               

               
Conread position:
               
399-617
               

               
Cow position:
               
chr11:2907700-2907489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
115, 21
               

               
Conread position:
               
399-618
               

               
Cow position:
               
chr11:5286-5502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
193, 21
               

               
Conread position:
               
399-618
               

               
Cow position:
               
chr11:952090-952307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
123, 21
               

               
Conread position:
               
399-618
               

               
Cow position:
               
chr11:2092158-2092373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
189, 21
               

               
Conread position:
               
399-618
               

               
Cow position:
               
chr11:3393390-3393170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
134, 21
               

               
Conread position:
               
399-618
               

               
Cow position:
               
chr11:11232636-11232417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
136, 21
               

               
Conread position:
               
399-618
               

               
Cow position:
               
chr11:21844314-21844098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
122, 21
               

               
Conread position:
               
399-618
               

               
Cow position:
               
chr11:27405247-27405034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
148, 21
               

               
Conread position:
               
399-618
               

               
Cow position:
               
chr11:34121019-34121237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
125, 21
               

               
Conread position:
               
399-618
               

               
Cow position:
               
chr11:35580076-35580299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
160, 21
               

               
Conread position:
               
399-618
               

               
Cow position:
               
chr11:47544949-47545170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
133, 18
               

               
Conread position:
               
399-618
               

               
Cow position:
               
chr11:48272016-48272239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
133, 21
               

               
Conread position:
               
399-618
               

               
Cow position:
               
chr11:50152997-50152775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
193, 21
               

               
Conread position:
               
399-618
               

               
Cow position:
               
chr11:71493039-71492823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
42, 21
               

               
Conread position:
               
399-618
               

               
Cow position:
               
chr11:80923505-80923285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
193, 21
               

               
Conread position:
               
399-620
               

               
Cow position:
               
chr11:13061411-13061195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
194, 21
               

               
Conread position:
               
400-592
               

               
Cow position:
               
chr11:8525292-8525105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
400-592
               

               
Cow position:
               
chr11:16251427-16251236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
144, 17
               

               
Conread position:
               
400-616
               

               
Cow position:
               
chr11:10213743-10213527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
189, 32
               

               
Conread position:
               
400-617
               

               
Cow position:
               
chr11:19500960-19500754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
190, 20
               

               
Conread position:
               
400-618
               

               
Cow position:
               
chr11:15632738-15632515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
87, 95
               

               
Conread position:
               
400-618
               

               
Cow position:
               
chr11:16342420-16342190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
81, 20
               

               
Conread position:
               
400-618
               

               
Cow position:
               
chr11:43897959-43898177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
180, 69
               

               
Conread position:
               
401-577
               

               
Cow position:
               
chr11:64334678-64334844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
402-584
               

               
Cow position:
               
chr11:48496766-48496597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
402-599
               

               
Cow position:
               
chr11:36182503-36182706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
24, 134
               

               
Conread position:
               
403-592
               

               
Cow position:
               
chr11:45646772-45646585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
150, 17
               

               
Conread position:
               
403-614
               

               
Cow position:
               
chr11:65430883-65431089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
133, 17
               

               
Conread position:
               
403-618
               

               
Cow position:
               
chr11:11557990-11558210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
123, 17
               

               
Conread position:
               
404-618
               

               
Cow position:
               
chr11:30830792-30830575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
127, 16
               

               
Conread position:
               
405-580
               

               
Cow position:
               
chr11:63520594-63520778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
405-584
               

               
Cow position:
               
chr11:30954823-30955000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
52, 15
               

               
Conread position:
               
405-587
               

               
Cow position:
               
chr11:2917767-2917583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
19, 122
               

               
Conread position:
               
405-596
               

               
Cow position:
               
chr11:48544260-48544445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
405-599
               

               
Cow position:
               
chr11:39115315-39115511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
18, 126
               

               
Conread position:
               
405-611
               

               
Cow position:
               
chr11:6154233-6154440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
29, 84
               

               
Conread position:
               
405-617
               

               
Cow position:
               
chr11:17660919-17661121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
405-617
               

               
Cow position:
               
chr11:65762775-65762553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
128, 15
               

               
Conread position:
               
405-618
               

               
Cow position:
               
chr11:3833528-3833324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
184, 38
               

               
Conread position:
               
405-618
               

               
Cow position:
               
chr11:34646416-34646628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
52, 15
               

               
Conread position:
               
405-618
               

               
Cow position:
               
chr11:44031827-44032050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
120, 15
               

               
Conread position:
               
405-618
               

               
Cow position:
               
chr11:44636933-44636715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
128, 15
               

               
Conread position:
               
405-620
               

               
Cow position:
               
chr11:45898228-45898009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
167, 15
               

               
Conread position:
               
406-599
               

               
Cow position:
               
chr11:2811904-2811714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
185, 60
               

               
Conread position:
               
406-616
               

               
Cow position:
               
chr11:18698702-18698916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
140, 122
               

               
Conread position:
               
406-618
               

               
Cow position:
               
chr11:7590018-7590227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
75, 65
               

               
Conread position:
               
408-618
               

               
Cow position:
               
chr11:45631940-45631727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
16, 125
               

               
Conread position:
               
411-578
               

               
Cow position:
               
chr11:18706986-18706821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
93, 20
               

               
Conread position:
               
411-595
               

               
Cow position:
               
chr11:83066322-83066507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
13, 131
               

               
Conread position:
               
411-613
               

               
Cow position:
               
chr11:81162605-81162399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
15, 58
               

               
Conread position:
               
411-617
               

               
Cow position:
               
chr11:62490261-62490476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
13, 49
               

               
Conread position:
               
411-618
               

               
Cow position:
               
chr11:20238501-20238715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
411-618
               

               
Cow position:
               
chr11:30120838-30120623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
411-618
               

               
Cow position:
               
chr11:52381047-52380833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
13, 120
               

               
Conread position:
               
413-617
               

               
Cow position:
               
chr11:59872760-59872963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
10, 118
               

               
Conread position:
               
416-615
               

               
Cow position:
               
chr11:56187454-56187648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
417-617
               

               
Cow position:
               
chr11:45434921-45435118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
6, 74
               

               
Conread position:
               
417-618
               

               
Cow position:
               
chr11:44222726-44222924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
119, 65
               

               
Conread position:
               
418-617
               

               
Cow position:
               
chr11:56349179-56348985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
27, 128
               

               
Conread position:
               
419-535
               

               
Cow position:
               
chr11:35258263-35258149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
419-536
               

               
Cow position:
               
chr11:16907205-16907087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
103, 34
               

               
Conread position:
               
419-536
               

               
Cow position:
               
chr11:65607853-65607735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
419-587
               

               
Cow position:
               
chr11:48295870-48296036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
419-592
               

               
Cow position:
               
chr11:11646907-11647081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
116, 144
               

               
Conread position:
               
419-617
               

               
Cow position:
               
chr11:80556058-80556257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
115, 109
               

               
Conread position:
               
419-618
               

               
Cow position:
               
chr11:11125500-11125702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
163, 129
               

               
Conread position:
               
419-618
               

               
Cow position:
               
chr11:33293950-33293740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
31, 126
               

               
Conread position:
               
421-618
               

               
Cow position:
               
chr11:77319252-77319453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
171, 107
               

               
Conread position:
               
422-591
               

               
Cow position:
               
chr11:71390723-71390554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
116, 106
               

               
Conread position:
               
424-618
               

               
Cow position:
               
chr11:69075751-69075949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
112, 104
               

               
Conread position:
               
426-583
               

               
Cow position:
               
chr11:70741131-70740978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
133, 96
               

               
Conread position:
               
426-591
               

               
Cow position:
               
chr11:55494524-55494686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
126, 72
               

               
Conread position:
               
426-594
               

               
Cow position:
               
chr11:59156034-59155867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
426-618
               

               
Cow position:
               
chr11:39499203-39499395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
109, 47
               

               
Conread position:
               
442-593
               

               
Cow position:
               
chr11:47772531-47772381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
80, 34
               

               
Conread position:
               
446-592
               

               
Cow position:
               
chr11:80537351-80537496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
473-614
               

               
Cow position:
               
chr11:17036638-17036493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
116, 63
               
Show alignments to all cow chromosomes.