Cow genome map
| Conread name: | rplac_12375.y1 |
| Conread position: | 80-434 |
| Cow position: | chr14:680556-680907 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 304, 17 |
| Conread position: | 84-434 |
| Cow position: | chr14:3061404-3061057 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 128, 13 |
| Conread position: | 97-408 |
| Cow position: | chr14:434074-434384 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 97-429 |
| Cow position: | chr14:680655-680986 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 222, 5 |
| Conread position: | 97-435 |
| Cow position: | chr14:3061141-3060804 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 97-440 |
| Cow position: | chr14:433990-434332 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 226 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 100-305 |
| Cow position: | chr14:663305-663100 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 100-435 |
| Cow position: | chr14:447601-447938 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 205 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 101-377 |
| Cow position: | chr14:663388-663112 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 126, 122 |
| Conread position: | 101-441 |
| Cow position: | chr14:3061558-3061218 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 211 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 58, 64 |
| Conread position: | 102-321 |
| Cow position: | chr14:206-425 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 102-342 |
| Cow position: | chr14:3155593-3155833 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 211, 217 |
| Conread position: | 102-378 |
| Cow position: | chr14:3060969-3060694 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 27, 31 |
| Conread position: | 102-430 |
| Cow position: | chr14:25895214-25895542 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 302, 282 |
| Conread position: | 102-431 |
| Cow position: | chr14:3061641-3061312 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 109, 117 |
| Conread position: | 102-433 |
| Cow position: | chr14:680407-680738 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 102-434 |
| Cow position: | chr14:3080410-3080078 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 205, 217 |
| Conread position: | 102-435 |
| Cow position: | chr14:680491-680824 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 102-435 |
| Cow position: | chr14:3061725-3061392 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 23, 19 |
| Conread position: | 102-435 |
| Cow position: | chr14:3128090-3127757 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 102-435 |
| Cow position: | chr14:25895298-25895631 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 218, 194 |
| Conread position: | 102-441 |
| Cow position: | chr14:433826-434165 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 232 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 190, 185 |
| Conread position: | 102-441 |
| Cow position: | chr14:663471-663132 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 62, 56 |
| Conread position: | 102-441 |
| Cow position: | chr14:3080242-3079903 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 102-441 |
| Cow position: | chr14:25895046-25895385 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 50, 20 |
| Conread position: | 102-441 |
| Cow position: | chr14:25895382-25895721 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 220 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 41, 28 |
| Conread position: | 103-410 |
| Cow position: | chr14:447942-448249 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 103-434 |
| Cow position: | chr14:3128005-3127674 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 117, 110 |
| Conread position: | 103-435 |
| Cow position: | chr14:3061052-3060720 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 224 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 208, 204 |
| Conread position: | 103-446 |
| Cow position: | chr14:3061220-3060877 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 284, 268 |
| Conread position: | 103-448 |
| Cow position: | chr14:433911-434256 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 45, 18 |
| Conread position: | 111-338 |
| Cow position: | chr14:434171-434399 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 224, 0 |
| Conread position: | 111-405 |
| Cow position: | chr14:137-425 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 33, 26 |
| Conread position: | 111-426 |
| Cow position: | chr14:3079981-3079666 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 111-434 |
| Cow position: | chr14:447782-448105 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 14, 8 |
| Conread position: | 111-435 |
| Cow position: | chr14:3061464-3061140 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 175, 181 |
| Conread position: | 111-435 |
| Cow position: | chr14:3080737-3080413 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 111-440 |
| Cow position: | chr14:3080821-3080492 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 111-442 |
| Cow position: | chr14:447698-448029 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 111-442 |
| Cow position: | chr14:3155434-3155765 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 204 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 100, 108 |
| Conread position: | 112-417 |
| Cow position: | chr14:3127576-3127271 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 112-431 |
| Cow position: | chr14:3080652-3080333 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 140-435 |
| Cow position: | chr14:433780-434075 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 25, 36 |
| Conread position: | 142-435 |
| Cow position: | chr14:3061265-3060972 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 70, 74 |
| Conread position: | 142-435 |
| Cow position: | chr14:3128134-3127841 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 143-435 |
| Cow position: | chr14:447562-447854 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 147-442 |
| Cow position: | chr14:3080449-3080154 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 246, 256 |
| Conread position: | 149-444 |
| Cow position: | chr14:3080027-3079732 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 151-435 |
| Cow position: | chr14:25895515-25895799 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 151-441 |
| Cow position: | chr14:25895179-25895469 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 175-430 |
| Cow position: | chr14:3155582-3155837 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 56, 62 |
| Conread position: | 175-446 |
| Cow position: | chr14:447930-448201 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 109, 117 |
| Conread position: | 176-442 |
| Cow position: | chr14:663480-663215 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 175 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 117, 11 |
| Conread position: | 177-434 |
| Cow position: | chr14:447512-447769 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 177-448 |
| Cow position: | chr14:680398-680669 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 39, 35 |
| Conread position: | 218-435 |
| Cow position: | chr14:433774-433991 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 38, 28 |
Show alignments to all cow chromosomes.