Cow genome map
| Conread name: | rplac_12375.y1 |
| Conread position: | 55-448 |
| Cow position: | chr18:46317235-46316838 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 33, 44 |
| Conread position: | 78-443 |
| Cow position: | chr18:56391355-56390989 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 219 |
| Conread position: | 97-347 |
| Cow position: | chr18:55497273-55497022 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 246, 5 |
| Conread position: | 97-431 |
| Cow position: | chr18:52012262-52011929 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 138, 5 |
| Conread position: | 100-435 |
| Cow position: | chr18:56329836-56329501 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 280, 270 |
| Conread position: | 100-446 |
| Cow position: | chr18:55497439-55497093 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 101-369 |
| Cow position: | chr18:47846501-47846233 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 121, 127 |
| Conread position: | 101-443 |
| Cow position: | chr18:56391583-56391241 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 234 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 57, 64 |
| Conread position: | 102-357 |
| Cow position: | chr18:54668594-54668339 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 58, 63 |
| Conread position: | 102-360 |
| Cow position: | chr18:56391885-56391625 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 237, 0 |
| Conread position: | 102-427 |
| Cow position: | chr18:53635691-53635366 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 114, 110 |
| Conread position: | 102-427 |
| Cow position: | chr18:56128474-56128799 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 114, 110 |
| Conread position: | 102-434 |
| Cow position: | chr18:53610366-53610034 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 114, 110 |
| Conread position: | 102-434 |
| Cow position: | chr18:56329498-56329166 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 282, 292 |
| Conread position: | 102-443 |
| Cow position: | chr18:56391414-56391073 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 233 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 125, 121 |
| Conread position: | 102-444 |
| Cow position: | chr18:55497605-55497263 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 128, 135 |
| Conread position: | 102-446 |
| Cow position: | chr18:55497521-55497177 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 130, 121 |
| Conread position: | 103-417 |
| Cow position: | chr18:54668677-54668363 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 26, 44 |
| Conread position: | 103-432 |
| Cow position: | chr18:56316739-56317068 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 103-434 |
| Cow position: | chr18:49033112-49032781 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 216, 210 |
| Conread position: | 103-436 |
| Cow position: | chr18:42724318-42723985 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 80, 85 |
| Conread position: | 103-442 |
| Cow position: | chr18:56391497-56391158 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 216, 204 |
| Conread position: | 103-443 |
| Cow position: | chr18:49033196-49032856 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 285, 267 |
| Conread position: | 103-445 |
| Cow position: | chr18:56391968-56391628 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 232 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 340, 316 |
| Conread position: | 109-441 |
| Cow position: | chr18:42724480-42724148 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 211, 206 |
| Conread position: | 109-448 |
| Cow position: | chr18:54668755-54668416 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 220 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 121, 128 |
| Conread position: | 110-433 |
| Cow position: | chr18:22844260-22843934 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 154, 296 |
| Conread position: | 110-435 |
| Cow position: | chr18:47846408-47846083 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 111-422 |
| Cow position: | chr18:56329153-56328842 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 113, 126 |
| Conread position: | 111-431 |
| Cow position: | chr18:56391153-56390833 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 208, 196 |
| Conread position: | 112-418 |
| Cow position: | chr18:56267433-56267127 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 112-435 |
| Cow position: | chr18:44817852-44818175 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 199, 195 |
| Conread position: | 112-435 |
| Cow position: | chr18:56316496-56316819 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 112-441 |
| Cow position: | chr18:47846574-47846245 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 41, 20 |
| Conread position: | 136-435 |
| Cow position: | chr18:56316436-56316735 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 249, 234 |
| Conread position: | 137-442 |
| Cow position: | chr18:56329967-56329662 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 93, 100 |
| Conread position: | 149-434 |
| Cow position: | chr18:53610403-53610118 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 10, 24 |
| Conread position: | 149-435 |
| Cow position: | chr18:49033234-49032948 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 149-441 |
| Cow position: | chr18:53610151-53609859 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 78, 74 |
| Conread position: | 149-445 |
| Cow position: | chr18:47846705-47846409 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 150-446 |
| Cow position: | chr18:56316702-56316998 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 151-441 |
| Cow position: | chr18:47846619-47846329 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 8, 14 |
| Conread position: | 151-448 |
| Cow position: | chr18:55497640-55497343 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 76, 72 |
| Conread position: | 151-448 |
| Cow position: | chr18:56391197-56390900 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 206 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 233, 252 |
| Conread position: | 156-380 |
| Cow position: | chr18:54669684-54669462 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 162-440 |
| Cow position: | chr18:56267467-56267189 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 68, 75 |
| Conread position: | 162-441 |
| Cow position: | chr18:55497712-55497434 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 149, 16 |
| Conread position: | 169-426 |
| Cow position: | chr18:22844369-22844112 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 175-377 |
| Cow position: | chr18:54687748-54687950 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 31, 50 |
| Conread position: | 175-416 |
| Cow position: | chr18:54664091-54664332 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 209, 196 |
| Conread position: | 175-443 |
| Cow position: | chr18:56316643-56316911 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 177-443 |
| Cow position: | chr18:22844022-22843756 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 53, 60 |
| Conread position: | 178-441 |
| Cow position: | chr18:56391590-56391327 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 179-433 |
| Cow position: | chr18:54668853-54668599 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 86, 67 |
| Conread position: | 196-377 |
| Cow position: | chr18:44817852-44818033 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.