Cow genome map
| Conread name: | rplac_12375.y1 |
| Conread position: | 2-448 |
| Cow position: | chr25:33528928-33529374 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 20-443 |
| Cow position: | chr25:33530245-33530668 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 84 |
| Conread position: | 67-448 |
| Cow position: | chr25:33506729-33507108 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 14 |
| Conread position: | 68-433 |
| Cow position: | chr25:3675965-3676337 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 58 |
| Conread position: | 72-441 |
| Cow position: | chr25:24385181-24384811 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 31 |
| Conread position: | 78-443 |
| Cow position: | chr25:25652261-25652627 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 296 |
| Conread position: | 79-406 |
| Cow position: | chr25:34734017-34733691 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 217 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 79-443 |
| Cow position: | chr25:24385258-24384893 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 247 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 19, 25 |
| Conread position: | 80-431 |
| Cow position: | chr25:4657386-4657038 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 241 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 52, 17 |
| Conread position: | 80-444 |
| Cow position: | chr25:34473666-34474028 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 33, 20 |
| Conread position: | 80-448 |
| Cow position: | chr25:33530392-33530757 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 83-448 |
| Cow position: | chr25:24385420-24385056 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 246 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 231, 18 |
| Conread position: | 84-377 |
| Cow position: | chr25:24384997-24384707 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 252, 13 |
| Conread position: | 84-377 |
| Cow position: | chr25:33506827-33507121 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 20, 152 |
| Conread position: | 84-448 |
| Cow position: | chr25:33530144-33530505 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 80, 14 |
| Conread position: | 100-443 |
| Cow position: | chr25:4657453-4657110 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 123 |
| Conread position: | 101-293 |
| Cow position: | chr25:3664364-3664556 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 31, 20 |
| Conread position: | 101-448 |
| Cow position: | chr25:24385319-24384972 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 129, 136 |
| Conread position: | 101-448 |
| Cow position: | chr25:33530242-33530589 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 233 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 218, 207 |
| Conread position: | 102-417 |
| Cow position: | chr25:3676090-3676405 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 213 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 42, 19 |
| Conread position: | 102-440 |
| Cow position: | chr25:34763176-34763511 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 296, 276 |
| Conread position: | 102-441 |
| Cow position: | chr25:3636548-3636209 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 102-441 |
| Cow position: | chr25:34473521-34473860 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 102-442 |
| Cow position: | chr25:25652454-25652794 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 102-443 |
| Cow position: | chr25:3663945-3664286 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 102-443 |
| Cow position: | chr25:25652874-25653215 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 115 |
| Conread position: | 102-445 |
| Cow position: | chr25:3664197-3664540 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 102-448 |
| Cow position: | chr25:25652958-25653304 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 103-386 |
| Cow position: | chr25:3637078-3636792 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 103-434 |
| Cow position: | chr25:34473606-34473934 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 63, 74 |
| Conread position: | 103-435 |
| Cow position: | chr25:3636463-3636131 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 217 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 302, 296 |
| Conread position: | 103-435 |
| Cow position: | chr25:25652203-25652535 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 103-448 |
| Cow position: | chr25:33529113-33529458 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 108-446 |
| Cow position: | chr25:22940496-22940158 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 125, 114 |
| Conread position: | 111-336 |
| Cow position: | chr25:3676183-3676408 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 111-345 |
| Cow position: | chr25:3636203-3635969 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 111-435 |
| Cow position: | chr25:25652715-25653039 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 226 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 116, 112 |
| Conread position: | 111-448 |
| Cow position: | chr25:25652799-25653136 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 56 |
| Conread position: | 112-371 |
| Cow position: | chr25:33530589-33530850 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 230, 0 |
| Conread position: | 112-395 |
| Cow position: | chr25:33529206-33529489 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 212, 217 |
| Conread position: | 112-421 |
| Cow position: | chr25:3664291-3664600 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 214 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 13, 9 |
| Conread position: | 112-421 |
| Cow position: | chr25:24398714-24398405 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 112-441 |
| Cow position: | chr25:25652380-25652709 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 25, 9 |
| Conread position: | 112-441 |
| Cow position: | chr25:33530085-33530414 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 112-443 |
| Cow position: | chr25:3664039-3664370 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 220 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 112-446 |
| Cow position: | chr25:3636370-3636036 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 13, 6 |
| Conread position: | 124-360 |
| Cow position: | chr25:36844584-36844348 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 92, 86 |
| Conread position: | 130-442 |
| Cow position: | chr25:3664141-3664453 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 131-379 |
| Cow position: | chr25:22941249-22941002 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 141-448 |
| Cow position: | chr25:22941324-22941017 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 76, 82 |
| Conread position: | 142-424 |
| Cow position: | chr25:24385026-24384743 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 280, 0 |
| Conread position: | 142-429 |
| Cow position: | chr25:3636256-3635969 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 197 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 147-443 |
| Cow position: | chr25:25652667-25652963 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 160 |
| Conread position: | 149-373 |
| Cow position: | chr25:33506977-33507202 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 63, 68 |
| Conread position: | 149-444 |
| Cow position: | chr25:25652585-25652880 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 196 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 150-424 |
| Cow position: | chr25:33530543-33530817 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 150-432 |
| Cow position: | chr25:34473821-34474101 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 268, 43 |
| Conread position: | 151-387 |
| Cow position: | chr25:25653091-25653328 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 228, 0 |
| Conread position: | 151-435 |
| Cow position: | chr25:22235976-22236260 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 240, 252 |
| Conread position: | 169-435 |
| Cow position: | chr25:25652185-25652451 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 189 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 174-443 |
| Cow position: | chr25:24398736-24398467 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 52, 48 |
| Conread position: | 175-434 |
| Cow position: | chr25:326501-326759 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 175-434 |
| Cow position: | chr25:3663934-3664193 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 175-448 |
| Cow position: | chr25:34473510-34473783 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 122, 131 |
| Conread position: | 176-433 |
| Cow position: | chr25:33530064-33530322 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 186 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 11, 140 |
| Conread position: | 178-440 |
| Cow position: | chr25:34763168-34763430 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 187-426 |
| Cow position: | chr25:23267236-23266997 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 25, 20 |
| Conread position: | 187-445 |
| Cow position: | chr25:4657450-4657192 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 120 |
| Conread position: | 191-433 |
| Cow position: | chr25:34732589-34732347 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 116, 106 |
| Conread position: | 193-443 |
| Cow position: | chr25:34733988-34733738 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 108, 114 |
| Conread position: | 235-436 |
| Cow position: | chr25:23267272-23267071 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 75, 56 |
| Conread position: | 253-443 |
| Cow position: | chr25:3663928-3664118 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 255-448 |
| Cow position: | chr25:25652187-25652380 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 258-441 |
| Cow position: | chr25:4657463-4657280 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 261-448 |
| Cow position: | chr25:3636557-3636370 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 271-444 |
| Cow position: | chr25:33530076-33530249 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 133, 128 |
Show alignments to all cow chromosomes.